Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1261 and GFF1262 are separated by 340 nucleotides GFF1262 and GFF1263 are separated by 209 nucleotides GFF1263 and GFF1264 are separated by 127 nucleotides
GFF1261 - 2-oxoglutarate carboxylase small subunit, at 514,736 to 516,154
GFF1261
GFF1262 - hypothetical protein, at 516,495 to 517,001
GFF1262
GFF1263 - 50S ribosomal protein L32, at 517,211 to 517,390
GFF1263
GFF1264 - Phosphate acyltransferase, at 517,518 to 518,570
GFF1264
Position (kb) 516
517
518 Strain fitness (log2 ratio) -2
-1
0
1 at 516.403 kb on - strand at 516.425 kb on + strand at 516.452 kb on - strand at 516.465 kb on - strand at 516.467 kb on + strand at 516.467 kb on + strand at 516.468 kb on - strand at 516.572 kb on - strand, within GFF1262 at 516.686 kb on + strand, within GFF1262 at 516.686 kb on + strand, within GFF1262 at 516.686 kb on + strand, within GFF1262 at 516.811 kb on + strand, within GFF1262 at 516.843 kb on - strand, within GFF1262 at 516.843 kb on - strand, within GFF1262 at 516.899 kb on + strand, within GFF1262 at 516.899 kb on + strand, within GFF1262 at 516.900 kb on - strand, within GFF1262 at 516.926 kb on + strand, within GFF1262 at 516.927 kb on - strand, within GFF1262 at 516.934 kb on + strand, within GFF1262 at 516.999 kb on + strand at 516.999 kb on + strand at 517.000 kb on - strand at 517.007 kb on + strand at 517.007 kb on + strand at 517.041 kb on + strand at 517.041 kb on + strand at 517.042 kb on - strand at 517.042 kb on - strand at 517.042 kb on - strand at 517.042 kb on - strand at 517.073 kb on - strand at 517.073 kb on - strand at 517.388 kb on + strand at 517.400 kb on + strand at 517.415 kb on + strand at 517.432 kb on + strand at 517.452 kb on + strand at 517.452 kb on + strand at 517.461 kb on + strand at 517.461 kb on + strand at 517.484 kb on + strand at 517.498 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 516,403 - -0.0 516,425 + -0.3 516,452 - +0.1 516,465 - +0.4 516,467 + +0.1 516,467 + -0.4 516,468 - +0.7 516,572 - GFF1262 0.15 -0.5 516,686 + GFF1262 0.38 -0.9 516,686 + GFF1262 0.38 +0.1 516,686 + GFF1262 0.38 -1.3 516,811 + GFF1262 0.62 -1.0 516,843 - GFF1262 0.69 -0.5 516,843 - GFF1262 0.69 -1.0 516,899 + GFF1262 0.80 -1.1 516,899 + GFF1262 0.80 -0.2 516,900 - GFF1262 0.80 +0.3 516,926 + GFF1262 0.85 -2.0 516,927 - GFF1262 0.85 -0.3 516,934 + GFF1262 0.87 +0.1 516,999 + -0.6 516,999 + +0.1 517,000 - -0.7 517,007 + +0.2 517,007 + +0.6 517,041 + -0.9 517,041 + +1.7 517,042 - -0.5 517,042 - -0.3 517,042 - -0.7 517,042 - -0.2 517,073 - -0.6 517,073 - -0.5 517,388 + -0.7 517,400 + -1.3 517,415 + -0.7 517,432 + -2.1 517,452 + +0.2 517,452 + -0.7 517,461 + -0.7 517,461 + +1.1 517,484 + -1.5 517,498 + -0.6
Or see this region's nucleotide sequence