Strain Fitness in Methylophilus sp. DMC18 around GFF123

Experiment: Methanol and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF122 and GFF123 overlap by 4 nucleotidesGFF123 and GFF124 are separated by 35 nucleotidesGFF124 and GFF125 are separated by 12 nucleotidesGFF125 and GFF126 overlap by 4 nucleotides GFF122 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 129,156 to 130,454 GFF122 GFF123 - Ferredoxin-like protein FixX, at 130,451 to 130,744 GFF123 GFF124 - Ferredoxin, 2Fe-2s, at 130,780 to 131,103 GFF124 GFF125 - hypothetical protein, at 131,116 to 131,643 GFF125 GFF126 - hypothetical protein, at 131,640 to 131,999 GFF126 Position (kb) 130 131Strain fitness (log2 ratio) -3 -2 -1 0 1at 129.460 kb on - strand, within GFF122at 129.460 kb on - strand, within GFF122at 129.469 kb on + strand, within GFF122at 129.469 kb on + strand, within GFF122at 129.469 kb on + strand, within GFF122at 129.470 kb on - strand, within GFF122at 129.529 kb on + strand, within GFF122at 129.529 kb on + strand, within GFF122at 129.613 kb on - strand, within GFF122at 129.628 kb on + strand, within GFF122at 129.629 kb on - strand, within GFF122at 129.651 kb on + strand, within GFF122at 129.652 kb on - strand, within GFF122at 129.837 kb on + strand, within GFF122at 129.838 kb on - strand, within GFF122at 129.875 kb on + strand, within GFF122at 129.875 kb on + strand, within GFF122at 129.875 kb on + strand, within GFF122at 129.876 kb on - strand, within GFF122at 129.876 kb on - strand, within GFF122at 129.876 kb on - strand, within GFF122at 129.876 kb on - strand, within GFF122at 129.876 kb on - strand, within GFF122at 129.876 kb on - strand, within GFF122at 129.876 kb on - strand, within GFF122at 129.912 kb on + strand, within GFF122at 129.913 kb on - strand, within GFF122at 129.984 kb on + strand, within GFF122at 129.984 kb on + strand, within GFF122at 129.984 kb on + strand, within GFF122at 129.985 kb on - strand, within GFF122at 129.985 kb on - strand, within GFF122at 129.985 kb on - strand, within GFF122at 129.986 kb on + strand, within GFF122at 129.986 kb on + strand, within GFF122at 130.198 kb on - strand, within GFF122at 130.375 kb on + strandat 130.376 kb on - strandat 130.456 kb on + strandat 130.456 kb on + strandat 130.456 kb on + strandat 130.457 kb on - strandat 130.457 kb on - strandat 130.457 kb on - strandat 130.573 kb on + strand, within GFF123at 130.573 kb on + strand, within GFF123at 130.574 kb on - strand, within GFF123at 130.670 kb on - strand, within GFF123at 130.757 kb on - strandat 130.786 kb on - strandat 130.808 kb on + strandat 130.808 kb on + strandat 130.808 kb on + strandat 130.808 kb on + strandat 130.808 kb on + strandat 130.809 kb on - strandat 130.809 kb on - strandat 130.809 kb on - strandat 130.812 kb on + strandat 130.813 kb on - strand, within GFF124at 130.813 kb on - strand, within GFF124at 130.813 kb on - strand, within GFF124at 130.873 kb on - strand, within GFF124at 131.002 kb on + strand, within GFF124at 131.003 kb on - strand, within GFF124at 131.102 kb on - strandat 131.113 kb on + strandat 131.113 kb on + strandat 131.113 kb on + strandat 131.131 kb on - strandat 131.157 kb on + strandat 131.158 kb on - strandat 131.225 kb on - strand, within GFF125at 131.279 kb on + strand, within GFF125at 131.280 kb on - strand, within GFF125at 131.280 kb on - strand, within GFF125at 131.317 kb on + strand, within GFF125at 131.317 kb on + strand, within GFF125at 131.317 kb on + strand, within GFF125at 131.318 kb on - strand, within GFF125at 131.318 kb on - strand, within GFF125at 131.318 kb on - strand, within GFF125at 131.318 kb on - strand, within GFF125at 131.318 kb on - strand, within GFF125at 131.320 kb on + strand, within GFF125at 131.321 kb on - strand, within GFF125at 131.321 kb on - strand, within GFF125at 131.321 kb on - strand, within GFF125at 131.321 kb on - strand, within GFF125at 131.329 kb on + strand, within GFF125at 131.330 kb on - strand, within GFF125at 131.330 kb on - strand, within GFF125at 131.330 kb on - strand, within GFF125at 131.330 kb on - strand, within GFF125at 131.338 kb on + strand, within GFF125at 131.339 kb on - strand, within GFF125at 131.382 kb on + strand, within GFF125at 131.382 kb on + strand, within GFF125at 131.382 kb on + strand, within GFF125at 131.383 kb on - strand, within GFF125at 131.515 kb on + strand, within GFF125at 131.515 kb on + strand, within GFF125at 131.515 kb on + strand, within GFF125at 131.516 kb on - strand, within GFF125at 131.516 kb on - strand, within GFF125at 131.516 kb on - strand, within GFF125at 131.559 kb on - strand, within GFF125at 131.613 kb on - strandat 131.613 kb on - strandat 131.613 kb on - strandat 131.613 kb on - strandat 131.620 kb on + strandat 131.620 kb on + strandat 131.621 kb on - strandat 131.621 kb on - strandat 131.666 kb on + strandat 131.667 kb on - strandat 131.667 kb on - strandat 131.667 kb on - strandat 131.667 kb on - strandat 131.667 kb on - strandat 131.670 kb on - strandat 131.670 kb on - strandat 131.670 kb on - strandat 131.673 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
remove
129,460 - GFF122 0.23 -0.4
129,460 - GFF122 0.23 +0.3
129,469 + GFF122 0.24 -1.1
129,469 + GFF122 0.24 -1.2
129,469 + GFF122 0.24 +0.7
129,470 - GFF122 0.24 +1.2
129,529 + GFF122 0.29 +0.4
129,529 + GFF122 0.29 +0.2
129,613 - GFF122 0.35 -0.2
129,628 + GFF122 0.36 +0.0
129,629 - GFF122 0.36 -0.3
129,651 + GFF122 0.38 +0.6
129,652 - GFF122 0.38 -0.2
129,837 + GFF122 0.52 -0.3
129,838 - GFF122 0.53 +0.2
129,875 + GFF122 0.55 -0.6
129,875 + GFF122 0.55 -0.6
129,875 + GFF122 0.55 -1.4
129,876 - GFF122 0.55 -1.0
129,876 - GFF122 0.55 -1.6
129,876 - GFF122 0.55 -0.3
129,876 - GFF122 0.55 -0.3
129,876 - GFF122 0.55 +0.0
129,876 - GFF122 0.55 -1.0
129,876 - GFF122 0.55 -0.2
129,912 + GFF122 0.58 +0.0
129,913 - GFF122 0.58 -0.3
129,984 + GFF122 0.64 -1.0
129,984 + GFF122 0.64 -1.3
129,984 + GFF122 0.64 -0.4
129,985 - GFF122 0.64 -0.2
129,985 - GFF122 0.64 -0.9
129,985 - GFF122 0.64 +0.7
129,986 + GFF122 0.64 -1.0
129,986 + GFF122 0.64 +0.3
130,198 - GFF122 0.80 -1.0
130,375 + -1.0
130,376 - -1.6
130,456 + -0.3
130,456 + -0.1
130,456 + -1.6
130,457 - +0.0
130,457 - -1.4
130,457 - +0.6
130,573 + GFF123 0.41 -1.3
130,573 + GFF123 0.41 +0.0
130,574 - GFF123 0.42 -1.3
130,670 - GFF123 0.74 -2.2
130,757 - -2.8
130,786 - +0.7
130,808 + -0.5
130,808 + -0.3
130,808 + -1.8
130,808 + -2.4
130,808 + +0.2
130,809 - -1.3
130,809 - -0.6
130,809 - -1.0
130,812 + +1.0
130,813 - GFF124 0.10 +0.3
130,813 - GFF124 0.10 +0.2
130,813 - GFF124 0.10 -1.0
130,873 - GFF124 0.29 +0.0
131,002 + GFF124 0.69 -1.0
131,003 - GFF124 0.69 +0.4
131,102 - +1.0
131,113 + -0.7
131,113 + -1.0
131,113 + -0.7
131,131 - +0.3
131,157 + -0.6
131,158 - -0.4
131,225 - GFF125 0.21 +0.5
131,279 + GFF125 0.31 +0.2
131,280 - GFF125 0.31 -0.8
131,280 - GFF125 0.31 +0.4
131,317 + GFF125 0.38 +1.0
131,317 + GFF125 0.38 +1.0
131,317 + GFF125 0.38 -0.5
131,318 - GFF125 0.38 -0.6
131,318 - GFF125 0.38 +0.0
131,318 - GFF125 0.38 +0.0
131,318 - GFF125 0.38 -1.6
131,318 - GFF125 0.38 +1.0
131,320 + GFF125 0.39 -0.4
131,321 - GFF125 0.39 +0.3
131,321 - GFF125 0.39 -0.5
131,321 - GFF125 0.39 -0.3
131,321 - GFF125 0.39 -1.3
131,329 + GFF125 0.40 -1.3
131,330 - GFF125 0.41 +0.0
131,330 - GFF125 0.41 +0.0
131,330 - GFF125 0.41 -0.6
131,330 - GFF125 0.41 -0.2
131,338 + GFF125 0.42 -0.4
131,339 - GFF125 0.42 -0.3
131,382 + GFF125 0.50 +0.7
131,382 + GFF125 0.50 -0.3
131,382 + GFF125 0.50 -0.4
131,383 - GFF125 0.51 -0.1
131,515 + GFF125 0.76 -1.8
131,515 + GFF125 0.76 -0.2
131,515 + GFF125 0.76 -1.0
131,516 - GFF125 0.76 -0.4
131,516 - GFF125 0.76 -0.5
131,516 - GFF125 0.76 +0.3
131,559 - GFF125 0.84 +0.0
131,613 - -0.6
131,613 - -1.6
131,613 - -0.1
131,613 - -0.5
131,620 + -1.0
131,620 + +0.6
131,621 - -2.1
131,621 - -1.3
131,666 + -0.7
131,667 - -0.3
131,667 - +0.2
131,667 - -0.8
131,667 - -0.2
131,667 - -0.4
131,670 - -0.7
131,670 - -0.7
131,670 - +0.0
131,673 - +0.5

Or see this region's nucleotide sequence