Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1131 and GFF1132 are separated by 83 nucleotides GFF1132 and GFF1133 are separated by 113 nucleotides GFF1133 and GFF1134 are separated by 58 nucleotides GFF1134 and GFF1135 are separated by 7 nucleotides
GFF1131 - Transcriptional regulatory protein OmpR, at 383,515 to 384,282
GFF1131
GFF1132 - hypothetical protein, at 384,366 to 384,827
GFF1132
GFF1133 - putative ABC transporter ATP-binding protein YbiT, at 384,941 to 386,536
GFF1133
GFF1134 - Protein DrgA, at 386,595 to 387,197
GFF1134
GFF1135 - Transcription elongation factor GreB, at 387,205 to 387,702
GFF1135
Position (kb) 384
385
386
387 Strain fitness (log2 ratio) -2
-1
0
1 at 383.963 kb on + strand, within GFF1131 at 383.963 kb on + strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 383.964 kb on - strand, within GFF1131 at 384.048 kb on - strand, within GFF1131 at 384.048 kb on - strand, within GFF1131 at 384.048 kb on - strand, within GFF1131 at 384.117 kb on + strand, within GFF1131 at 384.196 kb on - strand, within GFF1131 at 384.282 kb on + strand at 384.283 kb on - strand at 384.283 kb on - strand at 384.310 kb on + strand at 384.470 kb on - strand, within GFF1132 at 384.470 kb on - strand, within GFF1132 at 384.476 kb on + strand, within GFF1132 at 384.521 kb on + strand, within GFF1132 at 384.558 kb on - strand, within GFF1132 at 384.570 kb on + strand, within GFF1132 at 384.570 kb on + strand, within GFF1132 at 384.571 kb on - strand, within GFF1132 at 384.608 kb on + strand, within GFF1132 at 384.623 kb on - strand, within GFF1132 at 384.669 kb on - strand, within GFF1132 at 384.808 kb on - strand at 384.870 kb on - strand at 384.872 kb on + strand at 384.872 kb on + strand at 384.873 kb on - strand at 384.873 kb on - strand at 384.887 kb on + strand at 384.920 kb on - strand at 384.930 kb on - strand at 384.930 kb on - strand at 384.930 kb on - strand at 384.943 kb on - strand at 384.943 kb on - strand at 384.967 kb on - strand at 384.967 kb on - strand at 384.975 kb on + strand at 384.975 kb on + strand at 384.975 kb on + strand at 384.976 kb on - strand at 384.976 kb on - strand at 384.976 kb on - strand at 385.022 kb on - strand at 385.084 kb on - strand at 385.136 kb on - strand, within GFF1133 at 385.179 kb on - strand, within GFF1133 at 385.179 kb on - strand, within GFF1133 at 385.179 kb on - strand, within GFF1133 at 385.357 kb on - strand, within GFF1133 at 385.463 kb on - strand, within GFF1133 at 385.528 kb on + strand, within GFF1133 at 385.529 kb on - strand, within GFF1133 at 385.619 kb on - strand, within GFF1133 at 385.637 kb on - strand, within GFF1133 at 385.667 kb on - strand, within GFF1133 at 385.793 kb on - strand, within GFF1133 at 385.793 kb on - strand, within GFF1133 at 385.793 kb on - strand, within GFF1133 at 385.793 kb on - strand, within GFF1133 at 385.819 kb on - strand, within GFF1133 at 385.819 kb on - strand, within GFF1133 at 385.819 kb on - strand, within GFF1133 at 385.819 kb on - strand, within GFF1133 at 385.819 kb on - strand, within GFF1133 at 385.819 kb on - strand, within GFF1133 at 385.819 kb on - strand, within GFF1133 at 385.828 kb on - strand, within GFF1133 at 385.828 kb on - strand, within GFF1133 at 385.828 kb on - strand, within GFF1133 at 385.832 kb on - strand, within GFF1133 at 385.847 kb on - strand, within GFF1133 at 385.847 kb on - strand, within GFF1133 at 385.874 kb on - strand, within GFF1133 at 385.916 kb on - strand, within GFF1133 at 385.916 kb on - strand, within GFF1133 at 385.916 kb on - strand, within GFF1133 at 385.940 kb on - strand, within GFF1133 at 386.007 kb on - strand, within GFF1133 at 386.007 kb on - strand, within GFF1133 at 386.037 kb on - strand, within GFF1133 at 386.037 kb on - strand, within GFF1133 at 386.037 kb on - strand, within GFF1133 at 386.090 kb on - strand, within GFF1133 at 386.090 kb on - strand, within GFF1133 at 386.090 kb on - strand, within GFF1133 at 386.090 kb on - strand, within GFF1133 at 386.090 kb on - strand, within GFF1133 at 386.090 kb on - strand, within GFF1133 at 386.112 kb on - strand, within GFF1133 at 386.118 kb on - strand, within GFF1133 at 386.150 kb on - strand, within GFF1133 at 386.152 kb on - strand, within GFF1133 at 386.152 kb on - strand, within GFF1133 at 386.161 kb on - strand, within GFF1133 at 386.161 kb on - strand, within GFF1133 at 386.161 kb on - strand, within GFF1133 at 386.200 kb on - strand, within GFF1133 at 386.200 kb on - strand, within GFF1133 at 386.230 kb on - strand, within GFF1133 at 386.408 kb on - strand at 386.408 kb on - strand at 386.408 kb on - strand at 386.408 kb on - strand at 386.449 kb on - strand at 386.519 kb on - strand at 386.531 kb on + strand at 386.532 kb on - strand at 386.532 kb on - strand at 386.532 kb on - strand at 386.532 kb on - strand at 386.588 kb on - strand at 386.588 kb on - strand at 386.608 kb on + strand at 386.609 kb on - strand at 386.609 kb on - strand at 386.609 kb on - strand at 386.609 kb on - strand at 386.609 kb on - strand at 386.609 kb on - strand at 386.609 kb on - strand at 386.674 kb on - strand, within GFF1134 at 386.718 kb on + strand, within GFF1134 at 386.719 kb on - strand, within GFF1134 at 386.860 kb on + strand, within GFF1134 at 386.861 kb on - strand, within GFF1134 at 386.861 kb on - strand, within GFF1134 at 386.861 kb on - strand, within GFF1134 at 386.861 kb on - strand, within GFF1134 at 386.861 kb on - strand, within GFF1134 at 386.888 kb on - strand, within GFF1134 at 386.950 kb on - strand, within GFF1134 at 386.950 kb on - strand, within GFF1134 at 386.950 kb on - strand, within GFF1134 at 386.967 kb on - strand, within GFF1134 at 387.031 kb on - strand, within GFF1134 at 387.031 kb on - strand, within GFF1134 at 387.031 kb on - strand, within GFF1134 at 387.074 kb on + strand, within GFF1134 at 387.075 kb on - strand, within GFF1134 at 387.152 kb on - strand at 387.152 kb on - strand at 387.159 kb on - strand at 387.162 kb on - strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.214 kb on - strand at 387.221 kb on - strand at 387.226 kb on - strand at 387.314 kb on + strand, within GFF1135 at 387.315 kb on - strand, within GFF1135 at 387.315 kb on - strand, within GFF1135 at 387.315 kb on - strand, within GFF1135 at 387.365 kb on + strand, within GFF1135 at 387.366 kb on - strand, within GFF1135 at 387.366 kb on - strand, within GFF1135 at 387.394 kb on + strand, within GFF1135 at 387.395 kb on - strand, within GFF1135 at 387.423 kb on + strand, within GFF1135 at 387.423 kb on + strand, within GFF1135 at 387.423 kb on + strand, within GFF1135 at 387.424 kb on - strand, within GFF1135 at 387.424 kb on - strand, within GFF1135 at 387.424 kb on - strand, within GFF1135 at 387.424 kb on - strand, within GFF1135 at 387.424 kb on - strand, within GFF1135 at 387.424 kb on - strand, within GFF1135 at 387.424 kb on - strand, within GFF1135 at 387.482 kb on + strand, within GFF1135 at 387.482 kb on + strand, within GFF1135 at 387.483 kb on - strand, within GFF1135 at 387.500 kb on - strand, within GFF1135
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 383,963 + GFF1131 0.58 -0.7 383,963 + GFF1131 0.58 +0.7 383,964 - GFF1131 0.58 -1.0 383,964 - GFF1131 0.58 -0.3 383,964 - GFF1131 0.58 -1.5 383,964 - GFF1131 0.58 +1.4 384,048 - GFF1131 0.69 -0.2 384,048 - GFF1131 0.69 -0.4 384,048 - GFF1131 0.69 -1.3 384,117 + GFF1131 0.78 -0.7 384,196 - GFF1131 0.89 -0.9 384,282 + -1.1 384,283 - -2.5 384,283 - -0.9 384,310 + -1.3 384,470 - GFF1132 0.23 -0.9 384,470 - GFF1132 0.23 -0.6 384,476 + GFF1132 0.24 +0.7 384,521 + GFF1132 0.34 -1.5 384,558 - GFF1132 0.42 +0.7 384,570 + GFF1132 0.44 -0.8 384,570 + GFF1132 0.44 -0.1 384,571 - GFF1132 0.44 -1.3 384,608 + GFF1132 0.52 -1.3 384,623 - GFF1132 0.56 +0.7 384,669 - GFF1132 0.66 -0.3 384,808 - +0.3 384,870 - -0.2 384,872 + +0.4 384,872 + -1.6 384,873 - -0.3 384,873 - -0.1 384,887 + -0.7 384,920 - -2.3 384,930 - -0.6 384,930 - -1.3 384,930 - +0.8 384,943 - -2.3 384,943 - -0.5 384,967 - -1.7 384,967 - -0.9 384,975 + +0.3 384,975 + -0.7 384,975 + -0.8 384,976 - +0.1 384,976 - +1.3 384,976 - -0.9 385,022 - -1.3 385,084 - -0.3 385,136 - GFF1133 0.12 -0.9 385,179 - GFF1133 0.15 -0.9 385,179 - GFF1133 0.15 -0.8 385,179 - GFF1133 0.15 -0.9 385,357 - GFF1133 0.26 -0.3 385,463 - GFF1133 0.33 +0.3 385,528 + GFF1133 0.37 -1.9 385,529 - GFF1133 0.37 -1.5 385,619 - GFF1133 0.42 -2.4 385,637 - GFF1133 0.44 -0.9 385,667 - GFF1133 0.45 -0.7 385,793 - GFF1133 0.53 -0.7 385,793 - GFF1133 0.53 -0.6 385,793 - GFF1133 0.53 -1.5 385,793 - GFF1133 0.53 -0.7 385,819 - GFF1133 0.55 -0.3 385,819 - GFF1133 0.55 -1.6 385,819 - GFF1133 0.55 -1.4 385,819 - GFF1133 0.55 -0.6 385,819 - GFF1133 0.55 -0.5 385,819 - GFF1133 0.55 -0.3 385,819 - GFF1133 0.55 +0.3 385,828 - GFF1133 0.56 -1.7 385,828 - GFF1133 0.56 -0.7 385,828 - GFF1133 0.56 -0.9 385,832 - GFF1133 0.56 +0.3 385,847 - GFF1133 0.57 -1.9 385,847 - GFF1133 0.57 -0.9 385,874 - GFF1133 0.58 -0.9 385,916 - GFF1133 0.61 +0.3 385,916 - GFF1133 0.61 -0.5 385,916 - GFF1133 0.61 -1.5 385,940 - GFF1133 0.63 -0.9 386,007 - GFF1133 0.67 -0.7 386,007 - GFF1133 0.67 -0.3 386,037 - GFF1133 0.69 -1.3 386,037 - GFF1133 0.69 -1.3 386,037 - GFF1133 0.69 -0.6 386,090 - GFF1133 0.72 -1.5 386,090 - GFF1133 0.72 +0.3 386,090 - GFF1133 0.72 -2.2 386,090 - GFF1133 0.72 -1.5 386,090 - GFF1133 0.72 -2.0 386,090 - GFF1133 0.72 -0.5 386,112 - GFF1133 0.73 -1.5 386,118 - GFF1133 0.74 -1.3 386,150 - GFF1133 0.76 -0.1 386,152 - GFF1133 0.76 -1.3 386,152 - GFF1133 0.76 -0.9 386,161 - GFF1133 0.76 -0.3 386,161 - GFF1133 0.76 -0.5 386,161 - GFF1133 0.76 -1.3 386,200 - GFF1133 0.79 -2.5 386,200 - GFF1133 0.79 -1.3 386,230 - GFF1133 0.81 -0.1 386,408 - -0.5 386,408 - -1.6 386,408 - +0.3 386,408 - +0.8 386,449 - -0.2 386,519 - -1.2 386,531 + -1.3 386,532 - -0.3 386,532 - +0.1 386,532 - -1.5 386,532 - -0.5 386,588 - -0.9 386,588 - -0.1 386,608 + -0.9 386,609 - -0.2 386,609 - -0.9 386,609 - -0.8 386,609 - -0.7 386,609 - -1.6 386,609 - -0.6 386,609 - +0.5 386,674 - GFF1134 0.13 -1.5 386,718 + GFF1134 0.20 -0.2 386,719 - GFF1134 0.21 +0.7 386,860 + GFF1134 0.44 -0.9 386,861 - GFF1134 0.44 -0.5 386,861 - GFF1134 0.44 -0.9 386,861 - GFF1134 0.44 -1.3 386,861 - GFF1134 0.44 -0.7 386,861 - GFF1134 0.44 -0.8 386,888 - GFF1134 0.49 -1.3 386,950 - GFF1134 0.59 -0.3 386,950 - GFF1134 0.59 -0.0 386,950 - GFF1134 0.59 +0.5 386,967 - GFF1134 0.62 +0.1 387,031 - GFF1134 0.72 -0.5 387,031 - GFF1134 0.72 +0.8 387,031 - GFF1134 0.72 -0.3 387,074 + GFF1134 0.79 -0.5 387,075 - GFF1134 0.80 +0.7 387,152 - -1.7 387,152 - -0.8 387,159 - -0.7 387,162 - -1.5 387,214 - -0.9 387,214 - +0.1 387,214 - +0.1 387,214 - -0.3 387,221 - -1.2 387,226 - -1.9 387,314 + GFF1135 0.22 +0.7 387,315 - GFF1135 0.22 +0.1 387,315 - GFF1135 0.22 -1.7 387,315 - GFF1135 0.22 -0.6 387,365 + GFF1135 0.32 +0.4 387,366 - GFF1135 0.32 +0.6 387,366 - GFF1135 0.32 +0.7 387,394 + GFF1135 0.38 -0.9 387,395 - GFF1135 0.38 +0.1 387,423 + GFF1135 0.44 -2.4 387,423 + GFF1135 0.44 -0.1 387,423 + GFF1135 0.44 -1.9 387,424 - GFF1135 0.44 -1.5 387,424 - GFF1135 0.44 +0.8 387,424 - GFF1135 0.44 -2.4 387,424 - GFF1135 0.44 +0.1 387,424 - GFF1135 0.44 +0.1 387,424 - GFF1135 0.44 -0.2 387,424 - GFF1135 0.44 -0.2 387,482 + GFF1135 0.56 -1.2 387,482 + GFF1135 0.56 -1.2 387,483 - GFF1135 0.56 +0.4 387,500 - GFF1135 0.59 -0.9
Or see this region's nucleotide sequence