Strain Fitness in Methylophilus sp. DMC18 around GFF113

Experiment: Methanol and casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Methanol and casaminos (C)
119,503	-		GFF112	0.36	-0.3
119,528	-		GFF112	0.37	+0.0
119,664	-		GFF112	0.47	-1.3
119,674	-		GFF112	0.47	-0.5
119,829	+		GFF112	0.58	-0.9
119,829	+		GFF112	0.58	+0.0
119,829	+		GFF112	0.58	-1.8
119,830	-		GFF112	0.58	+1.4
119,830	-		GFF112	0.58	+0.0
119,830	-		GFF112	0.58	+0.0
119,877	+		GFF112	0.61	-1.6
119,878	-		GFF112	0.61	-0.1
119,878	-		GFF112	0.61	+0.0
119,945	+		GFF112	0.66	-2.3
119,945	+		GFF112	0.66	-0.7
119,979	+		GFF112	0.68	-1.2
119,979	+		GFF112	0.68	-3.2
119,979	+		GFF112	0.68	+0.6
119,979	+		GFF112	0.68	-0.4
119,979	+		GFF112	0.68	-0.4
119,980	-		GFF112	0.68	+0.0
119,980	-		GFF112	0.68	-1.4
120,012	+		GFF112	0.71	-1.0
120,012	+		GFF112	0.71	-0.4
120,012	+		GFF112	0.71	-2.0
120,087	+		GFF112	0.76	+0.0
120,109	+		GFF112	0.77	+0.0
120,109	+		GFF112	0.77	-1.0
120,147	+		GFF112	0.80	-0.5
120,155	+		GFF112	0.80	+0.0
120,165	+		GFF112	0.81	+0.4
120,166	-		GFF112	0.81	-0.3
120,171	-		GFF112	0.81	-1.0
120,184	+		GFF112	0.82	-0.7
120,185	-		GFF112	0.82	+0.3
120,190	-		GFF112	0.83	-0.6
120,207	+		GFF112	0.84	+0.1
120,273	+		GFF112	0.88	+0.0
120,274	-		GFF112	0.89	-1.1
120,274	-		GFF112	0.89	-0.4
120,274	-		GFF112	0.89	-1.0
120,346	-				+1.0
120,439	-				-0.2
120,480	+				-1.0
120,512	+				-1.0
120,512	+				+0.4
120,513	-				-0.4
120,609	-				+1.3
120,681	+		GFF113	0.14	+0.6
120,681	+		GFF113	0.14	-2.1
120,746	+		GFF113	0.19	+0.3
120,746	+		GFF113	0.19	-0.6
120,825	+		GFF113	0.24	-0.6
120,844	+		GFF113	0.25	-1.0
120,844	+		GFF113	0.25	-1.7
120,844	+		GFF113	0.25	+0.3
120,845	-		GFF113	0.25	-2.6
120,845	-		GFF113	0.25	-1.2
120,870	-		GFF113	0.27	-0.0
120,870	-		GFF113	0.27	-0.5
120,870	-		GFF113	0.27	-0.9
120,871	+		GFF113	0.27	-0.1
120,872	-		GFF113	0.27	-0.1
120,872	-		GFF113	0.27	-0.2
120,878	+		GFF113	0.27	-0.9
120,879	-		GFF113	0.27	-0.4
120,989	+		GFF113	0.34	-0.1
121,033	+		GFF113	0.37	+1.0
121,034	-		GFF113	0.37	-1.8
121,034	-		GFF113	0.37	+0.2
121,073	+		GFF113	0.40	-1.2
121,073	-		GFF113	0.40	-0.8
121,074	-		GFF113	0.40	-0.8
121,124	-		GFF113	0.43	+0.4
121,160	+		GFF113	0.45	-2.1
121,160	+		GFF113	0.45	-0.1
121,160	+		GFF113	0.45	-0.8
121,160	+		GFF113	0.45	+0.0
121,161	-		GFF113	0.45	+0.0
121,161	-		GFF113	0.45	-0.1
121,161	-		GFF113	0.45	-1.0
121,161	-		GFF113	0.45	-1.8
121,280	+		GFF113	0.53	-1.6
121,280	+		GFF113	0.53	+0.0
121,280	+		GFF113	0.53	-1.1
121,280	+		GFF113	0.53	+0.0
121,281	-		GFF113	0.53	+1.0
121,281	-		GFF113	0.53	+0.5
121,281	-		GFF113	0.53	-0.7
121,281	-		GFF113	0.53	-1.6
121,281	-		GFF113	0.53	-1.1
121,376	+		GFF113	0.59	+0.4
121,376	+		GFF113	0.59	-0.9
121,376	+		GFF113	0.59	-1.1
121,377	-		GFF113	0.59	-0.6
121,378	+		GFF113	0.59	-0.3
121,379	-		GFF113	0.59	-0.6
121,428	+		GFF113	0.62	-0.3
121,429	-		GFF113	0.62	-0.9
121,474	+		GFF113	0.65	-0.2
121,571	+		GFF113	0.72	-0.8
121,571	+		GFF113	0.72	-2.6
121,572	-		GFF113	0.72	-1.3
121,572	-		GFF113	0.72	+0.1
121,572	-		GFF113	0.72	-1.0
121,641	+		GFF113	0.76	-0.6
121,641	+		GFF113	0.76	-1.4
121,680	+		GFF113	0.79	+0.5
121,680	+		GFF113	0.79	+0.0
121,680	+		GFF113	0.79	+0.4
121,681	-		GFF113	0.79	-3.4
121,681	-		GFF113	0.79	-0.3
121,681	-		GFF113	0.79	+0.2
121,764	+		GFF113	0.84	-0.3
121,764	+		GFF113	0.84	-0.3
121,764	+		GFF113	0.84	-3.0
121,765	-		GFF113	0.84	-0.8
121,765	-		GFF113	0.84	-0.2
121,765	-		GFF113	0.84	-1.3
121,812	-		GFF113	0.87	-0.7
121,876	+				-0.7
121,876	+				-0.2
121,877	-				-0.3
121,877	-				-2.3
121,991	+				+0.3
121,991	+				-1.4
121,992	-				-0.8
121,992	-				+0.1
121,992	-				+0.7
122,002	+				-1.0
122,003	-				-0.3
122,032	-				-0.4
122,043	+				-0.3
122,044	-				-0.8
122,071	+				+0.2
122,071	+				-1.8
122,071	+				+0.0
122,071	+				-1.8
122,071	+				-0.9
122,072	-				+0.1
122,072	-				-0.2
122,072	-				-0.5
122,072	-				+0.9
122,072	-				-0.0
122,096	+				-0.8
122,096	+				-2.1
122,120	+				-0.6
122,120	+				-0.3
122,120	+				+1.0
122,132	+				-0.4
122,166	+				+0.3
122,166	+				+0.0
122,167	-				-1.8
122,167	-				+0.2
122,167	-				+0.0
122,167	-				-3.0
122,167	-				-2.4
122,170	+				+0.1
122,170	+				+0.7
122,170	+				+0.0
122,170	+				-0.8
122,170	+				-0.7
122,170	+				-2.4
122,170	+				-0.9
122,170	+				-2.7
122,170	+				+1.0
122,170	+				+0.3
122,170	+				+0.0
122,170	+				+0.0
122,170	+				-1.0
122,171	-				-1.0
122,171	-				-0.8
122,171	-				-1.3
122,171	-				-1.8
122,171	-				+0.5
122,171	-				-0.6
122,171	-				-0.6
122,171	-				-1.0
122,171	-				-1.6
122,171	-				-0.3
122,171	-				-0.1
122,174	+				-1.0
122,220	+				+0.4
122,221	-				-0.8
122,221	-				-0.5
122,221	-				-2.0
122,226	-				-1.0
122,226	-				+0.6
122,226	-				-0.1
122,233	-				+0.0
122,233	-				+0.0
122,233	-				-0.6
122,276	-				-0.2
122,293	+				+0.0
122,305	+				+0.3
122,306	-				+0.2
122,335	+				+0.0
122,335	+				-2.0
122,336	-				-0.7
122,336	-				-1.6
122,336	-				-0.1
122,356	+		GFF114	0.12	+0.0
122,356	+		GFF114	0.12	-0.2
122,356	+		GFF114	0.12	-0.6
122,356	+		GFF114	0.12	-1.3
122,357	-		GFF114	0.12	-0.8
122,357	-		GFF114	0.12	-0.5
122,432	+		GFF114	0.23	-1.1
122,432	+		GFF114	0.23	+0.1
122,432	+		GFF114	0.23	-0.2
122,432	+		GFF114	0.23	+0.0
122,433	-		GFF114	0.23	-1.0
122,433	-		GFF114	0.23	-0.5
122,461	+		GFF114	0.27	-1.0
122,462	-		GFF114	0.27	-1.9
122,462	-		GFF114	0.27	+0.3
122,462	-		GFF114	0.27	-1.2
122,462	-		GFF114	0.27	-0.8
122,462	-		GFF114	0.27	+0.3
122,468	+		GFF114	0.28	-1.6
122,468	+		GFF114	0.28	+0.5
122,468	+		GFF114	0.28	-0.7
122,491	+		GFF114	0.31	-2.3
122,491	+		GFF114	0.31	-1.0
122,491	+		GFF114	0.31	-0.6
122,491	+		GFF114	0.31	-1.1
122,491	+		GFF114	0.31	-0.2
122,491	+		GFF114	0.31	-0.1
122,492	-		GFF114	0.31	-0.2
122,492	-		GFF114	0.31	-1.4
122,492	-		GFF114	0.31	-2.0
122,492	-		GFF114	0.31	-1.1
122,492	-		GFF114	0.31	-1.0
122,492	-		GFF114	0.31	+0.0
122,509	+		GFF114	0.34	-1.3
122,510	-		GFF114	0.34	+0.2
122,535	-		GFF114	0.37	-1.8
122,541	-		GFF114	0.38	-1.2
122,541	-		GFF114	0.38	-1.3
122,578	+		GFF114	0.43	-1.0
122,578	+		GFF114	0.43	-0.3
122,578	+		GFF114	0.43	+0.7
122,578	+		GFF114	0.43	-1.0
122,578	+		GFF114	0.43	-0.1
122,579	-		GFF114	0.43	+0.0
122,579	-		GFF114	0.43	+0.7
122,580	+		GFF114	0.43	+0.3
122,580	+		GFF114	0.43	+0.0
122,580	+		GFF114	0.43	+0.9
122,580	+		GFF114	0.43	+0.2
122,580	+		GFF114	0.43	-0.2
122,581	-		GFF114	0.44	+1.0
122,581	-		GFF114	0.44	+1.0
122,581	-		GFF114	0.44	+0.0
122,585	+		GFF114	0.44	-1.0
122,585	+		GFF114	0.44	-1.0
122,585	+		GFF114	0.44	-1.1
122,585	+		GFF114	0.44	-0.6
122,586	-		GFF114	0.44	-0.3
122,586	-		GFF114	0.44	-1.3
122,586	-		GFF114	0.44	-0.6
122,591	-		GFF114	0.45	-2.3
122,618	-		GFF114	0.49	-1.3
122,620	+		GFF114	0.49	+1.0
122,620	+		GFF114	0.49	-1.6
122,620	+		GFF114	0.49	-1.4
122,620	+		GFF114	0.49	-1.0
122,621	-		GFF114	0.49	-0.8
122,621	-		GFF114	0.49	-0.6
122,638	+		GFF114	0.52	+0.2
122,638	+		GFF114	0.52	+1.0
122,638	+		GFF114	0.52	+0.0
122,644	+		GFF114	0.52	-1.1
122,645	-		GFF114	0.53	+0.4
122,645	-		GFF114	0.53	-0.6
122,645	-		GFF114	0.53	+0.0
122,654	+		GFF114	0.54	-1.2
122,654	+		GFF114	0.54	+0.3
122,666	+		GFF114	0.55	-1.6
122,667	-		GFF114	0.56	-0.6
122,683	+		GFF114	0.58	+0.1
122,683	+		GFF114	0.58	+0.8
122,683	+		GFF114	0.58	+0.5
122,683	+		GFF114	0.58	-0.3
122,684	-		GFF114	0.58	+0.8
122,684	-		GFF114	0.58	-0.5
122,686	+		GFF114	0.58	+0.9
122,686	+		GFF114	0.58	+1.3
122,687	-		GFF114	0.58	-2.3
122,705	+		GFF114	0.61	-1.1
122,705	+		GFF114	0.61	-0.6
122,705	+		GFF114	0.61	+0.0
122,725	+		GFF114	0.64	+0.7
122,726	-		GFF114	0.64	-0.6
122,726	-		GFF114	0.64	-0.5
122,726	-		GFF114	0.64	+0.3
122,726	-		GFF114	0.64	-0.2
122,753	+		GFF114	0.68	-0.6
122,753	+		GFF114	0.68	+0.7
122,754	-		GFF114	0.68	-1.0
122,754	-		GFF114	0.68	+0.7
122,754	-		GFF114	0.68	+0.4
122,759	+		GFF114	0.68	-1.5
122,772	-		GFF114	0.70	+0.4
122,772	-		GFF114	0.70	+0.2
122,772	-		GFF114	0.70	+0.7
122,772	-		GFF114	0.70	-0.1
122,833	+		GFF114	0.79	-0.3
122,833	+		GFF114	0.79	+1.6
122,834	-		GFF114	0.79	-0.1
122,834	-		GFF114	0.79	-0.9
122,865	+		GFF114	0.83	-1.6
122,866	+		GFF114	0.83	+0.7
122,866	+		GFF114	0.83	-0.1
122,866	+		GFF114	0.83	+0.4
122,867	-		GFF114	0.83	-0.8
122,871	+		GFF114	0.84	-0.4
122,872	-		GFF114	0.84	+0.6
122,902	+		GFF114	0.88	+0.6
122,903	-		GFF114	0.88	-1.0
122,903	-		GFF114	0.88	+0.1
122,903	-		GFF114	0.88	+0.6
122,908	+		GFF114	0.89	+0.0
122,921	+				-0.6
122,921	+				-0.7
122,921	+				-1.0
122,922	-				-1.6
122,922	-				+0.7
122,922	-				-1.3
122,922	-				+0.4
122,922	-				-0.9
122,945	+				-0.4
122,956	+				-1.3
122,956	+				-0.8
122,956	+				-1.7
123,010	-				-0.8