Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1127 and GFF1128 are separated by 125 nucleotides GFF1128 and GFF1129 are separated by 200 nucleotides GFF1129 and GFF1130 are separated by 306 nucleotides
GFF1127 - hypothetical protein, at 379,452 to 380,903
GFF1127
GFF1128 - hypothetical protein, at 381,029 to 381,211
GFF1128
GFF1129 - hypothetical protein, at 381,412 to 381,798
GFF1129
GFF1130 - Adaptive-response sensory-kinase SasA, at 382,105 to 383,484
GFF1130
Position (kb) 381
382 Strain fitness (log2 ratio) -2
-1
0
1 at 380.054 kb on + strand, within GFF1127 at 380.071 kb on - strand, within GFF1127 at 380.071 kb on - strand, within GFF1127 at 380.076 kb on - strand, within GFF1127 at 380.076 kb on - strand, within GFF1127 at 380.076 kb on - strand, within GFF1127 at 380.096 kb on + strand, within GFF1127 at 380.096 kb on + strand, within GFF1127 at 380.097 kb on - strand, within GFF1127 at 380.097 kb on - strand, within GFF1127 at 380.179 kb on + strand, within GFF1127 at 380.179 kb on + strand, within GFF1127 at 380.179 kb on + strand, within GFF1127 at 380.179 kb on + strand, within GFF1127 at 380.194 kb on + strand, within GFF1127 at 380.195 kb on - strand, within GFF1127 at 380.195 kb on - strand, within GFF1127 at 380.224 kb on + strand, within GFF1127 at 380.225 kb on - strand, within GFF1127 at 380.300 kb on + strand, within GFF1127 at 380.300 kb on + strand, within GFF1127 at 380.323 kb on + strand, within GFF1127 at 380.323 kb on + strand, within GFF1127 at 380.323 kb on + strand, within GFF1127 at 380.339 kb on + strand, within GFF1127 at 380.423 kb on + strand, within GFF1127 at 380.424 kb on - strand, within GFF1127 at 380.433 kb on + strand, within GFF1127 at 380.433 kb on + strand, within GFF1127 at 380.434 kb on - strand, within GFF1127 at 380.434 kb on - strand, within GFF1127 at 380.434 kb on - strand, within GFF1127 at 380.434 kb on - strand, within GFF1127 at 380.434 kb on - strand, within GFF1127 at 380.599 kb on + strand, within GFF1127 at 380.600 kb on - strand, within GFF1127 at 380.684 kb on - strand, within GFF1127 at 380.684 kb on - strand, within GFF1127 at 380.684 kb on - strand, within GFF1127 at 380.803 kb on - strand at 380.852 kb on + strand at 380.891 kb on + strand at 380.891 kb on + strand at 380.891 kb on + strand at 380.891 kb on + strand at 380.892 kb on - strand at 380.892 kb on - strand at 380.892 kb on - strand at 380.892 kb on - strand at 380.892 kb on - strand at 380.892 kb on - strand at 380.892 kb on - strand at 380.899 kb on - strand at 380.904 kb on - strand at 380.904 kb on - strand at 381.073 kb on + strand, within GFF1128 at 381.074 kb on - strand, within GFF1128 at 381.074 kb on - strand, within GFF1128 at 381.084 kb on - strand, within GFF1128 at 381.084 kb on - strand, within GFF1128 at 381.179 kb on + strand, within GFF1128 at 381.180 kb on - strand, within GFF1128 at 381.182 kb on + strand, within GFF1128 at 381.183 kb on - strand, within GFF1128 at 381.209 kb on + strand at 381.210 kb on - strand at 381.212 kb on + strand at 381.213 kb on - strand at 381.307 kb on + strand at 381.307 kb on + strand at 381.313 kb on + strand at 381.313 kb on + strand at 381.314 kb on - strand at 381.314 kb on - strand at 381.314 kb on - strand at 381.350 kb on - strand at 381.354 kb on - strand at 381.355 kb on + strand at 381.356 kb on - strand at 381.356 kb on - strand at 381.357 kb on + strand at 381.358 kb on - strand at 381.368 kb on + strand at 381.372 kb on + strand at 381.377 kb on + strand at 381.377 kb on + strand at 381.377 kb on + strand at 381.378 kb on - strand at 381.378 kb on - strand at 381.379 kb on + strand at 381.385 kb on + strand at 381.385 kb on + strand at 381.385 kb on + strand at 381.385 kb on + strand at 381.386 kb on - strand at 381.386 kb on - strand at 381.386 kb on - strand at 381.427 kb on + strand at 381.427 kb on + strand at 381.428 kb on - strand at 381.428 kb on - strand at 381.429 kb on + strand at 381.429 kb on + strand at 381.430 kb on - strand at 381.430 kb on - strand at 381.430 kb on - strand at 381.437 kb on + strand at 381.437 kb on + strand at 381.438 kb on - strand at 381.440 kb on + strand at 381.440 kb on + strand at 381.455 kb on - strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.461 kb on + strand, within GFF1129 at 381.462 kb on - strand, within GFF1129 at 381.462 kb on - strand, within GFF1129 at 381.462 kb on - strand, within GFF1129 at 381.462 kb on - strand, within GFF1129 at 381.462 kb on - strand, within GFF1129 at 381.483 kb on + strand, within GFF1129 at 381.519 kb on + strand, within GFF1129 at 381.527 kb on + strand, within GFF1129 at 381.527 kb on + strand, within GFF1129 at 381.527 kb on + strand, within GFF1129 at 381.527 kb on + strand, within GFF1129 at 381.527 kb on + strand, within GFF1129 at 381.528 kb on - strand, within GFF1129 at 381.528 kb on - strand, within GFF1129 at 381.528 kb on - strand, within GFF1129 at 381.530 kb on + strand, within GFF1129 at 381.530 kb on + strand, within GFF1129 at 381.545 kb on + strand, within GFF1129 at 381.559 kb on + strand, within GFF1129 at 381.560 kb on - strand, within GFF1129 at 381.604 kb on - strand, within GFF1129 at 381.604 kb on - strand, within GFF1129 at 381.604 kb on - strand, within GFF1129 at 381.631 kb on - strand, within GFF1129 at 381.668 kb on + strand, within GFF1129 at 381.668 kb on + strand, within GFF1129 at 381.669 kb on - strand, within GFF1129 at 381.669 kb on - strand, within GFF1129 at 381.669 kb on - strand, within GFF1129 at 381.669 kb on - strand, within GFF1129 at 381.669 kb on - strand, within GFF1129 at 381.692 kb on - strand, within GFF1129 at 381.692 kb on - strand, within GFF1129 at 381.692 kb on - strand, within GFF1129 at 381.692 kb on - strand, within GFF1129 at 381.693 kb on + strand, within GFF1129 at 381.693 kb on + strand, within GFF1129 at 381.693 kb on + strand, within GFF1129 at 381.693 kb on + strand, within GFF1129 at 381.694 kb on - strand, within GFF1129 at 381.694 kb on - strand, within GFF1129 at 381.694 kb on - strand, within GFF1129 at 381.720 kb on + strand, within GFF1129 at 381.796 kb on + strand at 381.796 kb on + strand at 381.796 kb on + strand at 381.810 kb on + strand at 381.811 kb on - strand at 381.811 kb on - strand at 381.818 kb on + strand at 381.818 kb on + strand at 381.818 kb on + strand at 381.818 kb on + strand at 381.819 kb on - strand at 381.819 kb on - strand at 381.819 kb on - strand at 381.819 kb on - strand at 381.838 kb on + strand at 381.838 kb on + strand at 381.838 kb on + strand at 381.852 kb on + strand at 381.853 kb on - strand at 381.930 kb on + strand at 381.942 kb on + strand at 381.942 kb on + strand at 381.942 kb on + strand at 381.942 kb on + strand at 381.942 kb on + strand at 381.943 kb on - strand at 381.943 kb on - strand at 381.943 kb on - strand at 381.943 kb on - strand at 381.943 kb on - strand at 381.943 kb on - strand at 381.943 kb on - strand at 381.963 kb on + strand at 381.963 kb on + strand at 381.963 kb on + strand at 381.964 kb on - strand at 382.004 kb on + strand at 382.005 kb on - strand at 382.031 kb on - strand at 382.044 kb on + strand at 382.045 kb on - strand at 382.076 kb on + strand at 382.076 kb on + strand at 382.077 kb on - strand at 382.106 kb on + strand at 382.106 kb on + strand at 382.107 kb on - strand at 382.107 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 380,054 + GFF1127 0.41 -1.7 380,071 - GFF1127 0.43 -1.5 380,071 - GFF1127 0.43 +0.1 380,076 - GFF1127 0.43 -0.2 380,076 - GFF1127 0.43 +0.1 380,076 - GFF1127 0.43 +1.1 380,096 + GFF1127 0.44 -0.9 380,096 + GFF1127 0.44 +0.6 380,097 - GFF1127 0.44 -0.9 380,097 - GFF1127 0.44 -0.4 380,179 + GFF1127 0.50 +0.1 380,179 + GFF1127 0.50 +0.7 380,179 + GFF1127 0.50 -1.1 380,179 + GFF1127 0.50 -0.7 380,194 + GFF1127 0.51 +0.4 380,195 - GFF1127 0.51 -0.9 380,195 - GFF1127 0.51 -0.9 380,224 + GFF1127 0.53 -0.7 380,225 - GFF1127 0.53 -2.1 380,300 + GFF1127 0.58 +0.1 380,300 + GFF1127 0.58 +0.1 380,323 + GFF1127 0.60 +0.1 380,323 + GFF1127 0.60 -0.8 380,323 + GFF1127 0.60 -0.3 380,339 + GFF1127 0.61 +1.1 380,423 + GFF1127 0.67 -0.0 380,424 - GFF1127 0.67 -2.0 380,433 + GFF1127 0.68 +0.1 380,433 + GFF1127 0.68 -0.9 380,434 - GFF1127 0.68 -0.5 380,434 - GFF1127 0.68 -0.3 380,434 - GFF1127 0.68 -0.7 380,434 - GFF1127 0.68 -0.3 380,434 - GFF1127 0.68 +0.1 380,599 + GFF1127 0.79 -0.4 380,600 - GFF1127 0.79 -0.6 380,684 - GFF1127 0.85 +0.3 380,684 - GFF1127 0.85 +0.3 380,684 - GFF1127 0.85 -0.5 380,803 - -0.3 380,852 + -2.4 380,891 + -1.5 380,891 + -1.3 380,891 + +1.7 380,891 + -0.0 380,892 - -1.3 380,892 - +0.1 380,892 - -0.9 380,892 - -0.9 380,892 - -1.1 380,892 - +0.7 380,892 - -1.5 380,899 - +0.1 380,904 - -0.0 380,904 - -1.7 381,073 + GFF1128 0.24 -1.1 381,074 - GFF1128 0.25 -1.1 381,074 - GFF1128 0.25 -0.3 381,084 - GFF1128 0.30 -0.2 381,084 - GFF1128 0.30 -0.2 381,179 + GFF1128 0.82 -0.8 381,180 - GFF1128 0.83 -1.3 381,182 + GFF1128 0.84 +0.1 381,183 - GFF1128 0.84 -1.6 381,209 + -1.3 381,210 - -0.3 381,212 + -1.3 381,213 - +0.5 381,307 + -1.3 381,307 + +0.3 381,313 + +0.1 381,313 + -1.3 381,314 - -0.3 381,314 - -0.2 381,314 - -1.7 381,350 - +0.1 381,354 - +0.1 381,355 + -0.2 381,356 - -1.4 381,356 - -0.9 381,357 + -1.7 381,358 - -0.2 381,368 + -0.9 381,372 + -0.7 381,377 + -1.9 381,377 + -1.0 381,377 + -1.3 381,378 - -0.7 381,378 - -1.3 381,379 + -0.3 381,385 + -0.9 381,385 + +0.4 381,385 + -0.4 381,385 + -1.5 381,386 - -1.4 381,386 - -0.9 381,386 - -0.3 381,427 + -0.9 381,427 + -1.7 381,428 - -1.3 381,428 - +0.7 381,429 + +0.5 381,429 + +0.3 381,430 - -0.2 381,430 - -0.7 381,430 - -0.5 381,437 + -0.5 381,437 + -0.7 381,438 - +0.1 381,440 + -0.6 381,440 + -0.3 381,455 - GFF1129 0.11 -0.6 381,461 + GFF1129 0.13 -0.2 381,461 + GFF1129 0.13 -0.2 381,461 + GFF1129 0.13 -1.6 381,461 + GFF1129 0.13 +0.3 381,461 + GFF1129 0.13 -1.6 381,461 + GFF1129 0.13 -2.5 381,461 + GFF1129 0.13 -0.1 381,461 + GFF1129 0.13 -0.6 381,461 + GFF1129 0.13 -1.5 381,462 - GFF1129 0.13 +0.1 381,462 - GFF1129 0.13 +0.1 381,462 - GFF1129 0.13 -0.9 381,462 - GFF1129 0.13 -0.3 381,462 - GFF1129 0.13 -0.7 381,483 + GFF1129 0.18 -0.8 381,519 + GFF1129 0.28 -0.2 381,527 + GFF1129 0.30 -1.7 381,527 + GFF1129 0.30 -0.0 381,527 + GFF1129 0.30 -1.3 381,527 + GFF1129 0.30 -0.1 381,527 + GFF1129 0.30 -1.3 381,528 - GFF1129 0.30 -0.3 381,528 - GFF1129 0.30 -0.7 381,528 - GFF1129 0.30 +0.3 381,530 + GFF1129 0.30 +0.7 381,530 + GFF1129 0.30 -0.6 381,545 + GFF1129 0.34 -0.7 381,559 + GFF1129 0.38 -0.7 381,560 - GFF1129 0.38 -0.5 381,604 - GFF1129 0.50 -0.9 381,604 - GFF1129 0.50 +0.3 381,604 - GFF1129 0.50 -0.9 381,631 - GFF1129 0.57 -0.7 381,668 + GFF1129 0.66 -0.8 381,668 + GFF1129 0.66 +0.4 381,669 - GFF1129 0.66 +0.1 381,669 - GFF1129 0.66 -0.3 381,669 - GFF1129 0.66 -0.1 381,669 - GFF1129 0.66 +0.2 381,669 - GFF1129 0.66 -0.7 381,692 - GFF1129 0.72 -1.7 381,692 - GFF1129 0.72 -0.9 381,692 - GFF1129 0.72 +0.3 381,692 - GFF1129 0.72 -0.5 381,693 + GFF1129 0.73 -2.5 381,693 + GFF1129 0.73 +0.1 381,693 + GFF1129 0.73 -0.1 381,693 + GFF1129 0.73 +0.3 381,694 - GFF1129 0.73 -2.3 381,694 - GFF1129 0.73 -0.3 381,694 - GFF1129 0.73 -0.9 381,720 + GFF1129 0.80 -0.9 381,796 + +1.3 381,796 + -0.7 381,796 + +0.3 381,810 + -0.7 381,811 - -1.3 381,811 - +0.6 381,818 + -0.5 381,818 + -1.3 381,818 + +0.5 381,818 + -0.6 381,819 - -1.4 381,819 - -2.1 381,819 - -0.3 381,819 - +0.5 381,838 + +0.1 381,838 + -0.9 381,838 + +1.7 381,852 + -2.4 381,853 - -0.9 381,930 + +1.1 381,942 + -0.7 381,942 + -1.3 381,942 + -0.3 381,942 + -1.4 381,942 + +0.5 381,943 - +0.1 381,943 - +0.3 381,943 - -0.2 381,943 - -1.4 381,943 - +0.1 381,943 - -0.9 381,943 - -0.7 381,963 + +0.8 381,963 + -0.4 381,963 + -0.1 381,964 - +0.3 382,004 + -0.1 382,005 - -1.1 382,031 - -0.2 382,044 + -0.0 382,045 - +0.1 382,076 + -1.0 382,076 + -0.9 382,077 - -1.5 382,106 + -0.5 382,106 + +0.1 382,107 - -0.7 382,107 - +0.3
Or see this region's nucleotide sequence