Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1059 and GFF1060 are separated by 127 nucleotides GFF1060 and GFF1061 are separated by 11 nucleotides
GFF1059 - Beta-barrel assembly-enhancing protease, at 297,609 to 299,471
GFF1059
GFF1060 - Peroxiredoxin, at 299,599 to 300,138
GFF1060
GFF1061 - IS1595 family transposase ISSsu9, at 300,150 to 300,632
GFF1061
Position (kb) 299
300
301 Strain fitness (log2 ratio) -2
-1
0
1 at 298.617 kb on - strand, within GFF1059 at 298.617 kb on - strand, within GFF1059 at 298.639 kb on + strand, within GFF1059 at 298.667 kb on - strand, within GFF1059 at 298.703 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.770 kb on + strand, within GFF1059 at 298.792 kb on + strand, within GFF1059 at 298.793 kb on - strand, within GFF1059 at 298.793 kb on - strand, within GFF1059 at 298.797 kb on + strand, within GFF1059 at 298.797 kb on + strand, within GFF1059 at 298.798 kb on - strand, within GFF1059 at 298.798 kb on - strand, within GFF1059 at 298.824 kb on - strand, within GFF1059 at 298.824 kb on - strand, within GFF1059 at 298.895 kb on - strand, within GFF1059 at 298.918 kb on - strand, within GFF1059 at 298.941 kb on + strand, within GFF1059 at 298.941 kb on + strand, within GFF1059 at 298.941 kb on + strand, within GFF1059 at 298.942 kb on - strand, within GFF1059 at 298.942 kb on - strand, within GFF1059 at 298.942 kb on - strand, within GFF1059 at 298.977 kb on + strand, within GFF1059 at 298.978 kb on - strand, within GFF1059 at 298.978 kb on - strand, within GFF1059 at 299.037 kb on + strand, within GFF1059 at 299.087 kb on + strand, within GFF1059 at 299.088 kb on - strand, within GFF1059 at 299.088 kb on - strand, within GFF1059 at 299.136 kb on - strand, within GFF1059 at 299.166 kb on - strand, within GFF1059 at 299.197 kb on + strand, within GFF1059 at 299.201 kb on - strand, within GFF1059 at 299.243 kb on - strand, within GFF1059 at 299.243 kb on - strand, within GFF1059 at 299.243 kb on - strand, within GFF1059 at 299.279 kb on + strand, within GFF1059 at 299.347 kb on + strand at 299.347 kb on + strand at 299.348 kb on - strand at 299.385 kb on + strand at 299.386 kb on - strand at 299.476 kb on + strand at 299.511 kb on + strand at 299.511 kb on + strand at 299.512 kb on - strand at 299.512 kb on - strand at 299.531 kb on + strand at 299.531 kb on + strand at 299.531 kb on + strand at 299.532 kb on - strand at 299.532 kb on - strand at 299.536 kb on + strand at 299.536 kb on + strand at 299.541 kb on + strand at 299.541 kb on + strand at 299.541 kb on + strand at 299.577 kb on + strand at 299.620 kb on + strand at 299.653 kb on + strand, within GFF1060 at 299.779 kb on + strand, within GFF1060 at 299.779 kb on + strand, within GFF1060 at 299.811 kb on + strand, within GFF1060 at 299.811 kb on + strand, within GFF1060 at 299.812 kb on - strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.877 kb on - strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 300.034 kb on - strand, within GFF1060 at 300.093 kb on + strand at 300.093 kb on + strand at 300.136 kb on + strand at 300.633 kb on + strand at 300.633 kb on + strand at 300.667 kb on + strand at 300.667 kb on + strand at 300.668 kb on - strand at 300.673 kb on + strand at 300.674 kb on - strand at 300.689 kb on + strand at 300.691 kb on + strand at 300.692 kb on - strand at 300.754 kb on + strand at 300.755 kb on - strand at 300.757 kb on + strand at 300.757 kb on + strand at 300.757 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.760 kb on + strand at 300.761 kb on - strand at 300.761 kb on - strand at 300.761 kb on - strand at 300.810 kb on + strand at 300.814 kb on + strand at 300.814 kb on + strand at 300.814 kb on + strand at 300.814 kb on + strand at 300.814 kb on + strand at 300.815 kb on - strand at 300.818 kb on + strand at 300.984 kb on + strand at 300.984 kb on + strand at 301.008 kb on - strand at 301.023 kb on - strand at 301.040 kb on + strand at 301.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 298,617 - GFF1059 0.54 -1.1 298,617 - GFF1059 0.54 -0.2 298,639 + GFF1059 0.55 -1.1 298,667 - GFF1059 0.57 -0.3 298,703 - GFF1059 0.59 +0.4 298,754 - GFF1059 0.61 -1.6 298,754 - GFF1059 0.61 -1.8 298,754 - GFF1059 0.61 -0.6 298,754 - GFF1059 0.61 -0.1 298,770 + GFF1059 0.62 -0.4 298,792 + GFF1059 0.63 -1.0 298,793 - GFF1059 0.64 +0.0 298,793 - GFF1059 0.64 -0.1 298,797 + GFF1059 0.64 -1.0 298,797 + GFF1059 0.64 -1.0 298,798 - GFF1059 0.64 -0.3 298,798 - GFF1059 0.64 +0.3 298,824 - GFF1059 0.65 -1.1 298,824 - GFF1059 0.65 -0.4 298,895 - GFF1059 0.69 -0.6 298,918 - GFF1059 0.70 -1.2 298,941 + GFF1059 0.71 -0.3 298,941 + GFF1059 0.71 -0.9 298,941 + GFF1059 0.71 +0.3 298,942 - GFF1059 0.72 +0.0 298,942 - GFF1059 0.72 -0.3 298,942 - GFF1059 0.72 -1.0 298,977 + GFF1059 0.73 +0.0 298,978 - GFF1059 0.73 -1.0 298,978 - GFF1059 0.73 -0.4 299,037 + GFF1059 0.77 +0.0 299,087 + GFF1059 0.79 -1.0 299,088 - GFF1059 0.79 -1.6 299,088 - GFF1059 0.79 -1.0 299,136 - GFF1059 0.82 -0.3 299,166 - GFF1059 0.84 +0.3 299,197 + GFF1059 0.85 +1.0 299,201 - GFF1059 0.85 -0.6 299,243 - GFF1059 0.88 +0.0 299,243 - GFF1059 0.88 -0.4 299,243 - GFF1059 0.88 -1.0 299,279 + GFF1059 0.90 -1.1 299,347 + +0.3 299,347 + -1.5 299,348 - -0.6 299,385 + -0.1 299,386 - +0.5 299,476 + +1.0 299,511 + -0.7 299,511 + -0.8 299,512 - +1.3 299,512 - -0.1 299,531 + -1.3 299,531 + -0.3 299,531 + -1.0 299,532 - -0.3 299,532 - -0.1 299,536 + +0.3 299,536 + -1.0 299,541 + -0.3 299,541 + -0.5 299,541 + -0.5 299,577 + -0.8 299,620 + -1.3 299,653 + GFF1060 0.10 -1.3 299,779 + GFF1060 0.33 -0.6 299,779 + GFF1060 0.33 -2.4 299,811 + GFF1060 0.39 -0.5 299,811 + GFF1060 0.39 +0.0 299,812 - GFF1060 0.39 -1.0 299,876 + GFF1060 0.51 -0.5 299,876 + GFF1060 0.51 -0.9 299,876 + GFF1060 0.51 -2.0 299,876 + GFF1060 0.51 -1.3 299,877 - GFF1060 0.51 +0.0 299,880 + GFF1060 0.52 -1.4 299,880 + GFF1060 0.52 +0.0 299,880 + GFF1060 0.52 -1.2 299,880 + GFF1060 0.52 +0.0 300,034 - GFF1060 0.81 +1.0 300,093 + +0.6 300,093 + -0.5 300,136 + -1.1 300,633 + -1.3 300,633 + -2.3 300,667 + +0.2 300,667 + +0.5 300,668 - -1.3 300,673 + +0.5 300,674 - +0.6 300,689 + -0.6 300,691 + -0.8 300,692 - -0.2 300,754 + -1.0 300,755 - -0.1 300,757 + +0.4 300,757 + -0.3 300,757 + +0.0 300,760 + -0.5 300,760 + -2.3 300,760 + -0.8 300,760 + -1.0 300,760 + -0.3 300,760 + +1.0 300,760 + -0.1 300,760 + -1.5 300,760 + +0.0 300,761 - -0.2 300,761 - -1.2 300,761 - -0.0 300,810 + -0.5 300,814 + -1.0 300,814 + -0.4 300,814 + +0.0 300,814 + -1.1 300,814 + +0.2 300,815 - -1.0 300,818 + -1.2 300,984 + -0.3 300,984 + -0.3 301,008 - -0.4 301,023 - -1.0 301,040 + -0.5 301,078 - -0.3
Or see this region's nucleotide sequence