Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1058 and GFF1059 overlap by 4 nucleotides GFF1059 and GFF1060 are separated by 127 nucleotides GFF1060 and GFF1061 are separated by 11 nucleotides
GFF1058 - hypothetical protein, at 296,779 to 297,612
GFF1058
GFF1059 - Beta-barrel assembly-enhancing protease, at 297,609 to 299,471
GFF1059
GFF1060 - Peroxiredoxin, at 299,599 to 300,138
GFF1060
GFF1061 - IS1595 family transposase ISSsu9, at 300,150 to 300,632
GFF1061
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -2
-1
0
1 at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.615 kb on + strand at 296.616 kb on - strand at 296.616 kb on - strand at 296.616 kb on - strand at 296.636 kb on + strand at 296.636 kb on + strand at 296.672 kb on - strand at 296.672 kb on - strand at 296.672 kb on - strand at 296.684 kb on + strand at 296.704 kb on + strand at 296.704 kb on + strand at 296.709 kb on + strand at 296.710 kb on - strand at 296.745 kb on + strand at 296.748 kb on - strand at 296.764 kb on - strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.778 kb on + strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.779 kb on - strand at 296.891 kb on + strand, within GFF1058 at 296.892 kb on - strand, within GFF1058 at 296.928 kb on + strand, within GFF1058 at 297.008 kb on + strand, within GFF1058 at 297.039 kb on + strand, within GFF1058 at 297.039 kb on + strand, within GFF1058 at 297.039 kb on + strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.040 kb on - strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.114 kb on + strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.115 kb on - strand, within GFF1058 at 297.273 kb on + strand, within GFF1058 at 297.318 kb on + strand, within GFF1058 at 297.319 kb on - strand, within GFF1058 at 297.319 kb on - strand, within GFF1058 at 297.378 kb on - strand, within GFF1058 at 297.465 kb on + strand, within GFF1058 at 297.466 kb on - strand, within GFF1058 at 297.466 kb on - strand, within GFF1058 at 297.466 kb on - strand, within GFF1058 at 297.539 kb on - strand at 297.539 kb on - strand at 297.546 kb on + strand at 297.546 kb on + strand at 297.547 kb on - strand at 297.547 kb on - strand at 297.588 kb on + strand at 297.589 kb on - strand at 297.589 kb on - strand at 297.589 kb on - strand at 297.610 kb on + strand at 297.611 kb on - strand at 297.684 kb on + strand at 297.685 kb on - strand at 297.749 kb on - strand at 297.774 kb on + strand at 297.775 kb on - strand at 297.804 kb on + strand, within GFF1059 at 297.805 kb on - strand, within GFF1059 at 297.825 kb on + strand, within GFF1059 at 297.825 kb on + strand, within GFF1059 at 297.864 kb on + strand, within GFF1059 at 297.865 kb on - strand, within GFF1059 at 297.865 kb on - strand, within GFF1059 at 297.962 kb on + strand, within GFF1059 at 297.963 kb on - strand, within GFF1059 at 297.963 kb on - strand, within GFF1059 at 297.963 kb on - strand, within GFF1059 at 298.014 kb on - strand, within GFF1059 at 298.014 kb on - strand, within GFF1059 at 298.063 kb on + strand, within GFF1059 at 298.063 kb on + strand, within GFF1059 at 298.063 kb on + strand, within GFF1059 at 298.064 kb on - strand, within GFF1059 at 298.064 kb on - strand, within GFF1059 at 298.064 kb on - strand, within GFF1059 at 298.125 kb on + strand, within GFF1059 at 298.125 kb on + strand, within GFF1059 at 298.126 kb on - strand, within GFF1059 at 298.168 kb on + strand, within GFF1059 at 298.169 kb on - strand, within GFF1059 at 298.169 kb on - strand, within GFF1059 at 298.185 kb on + strand, within GFF1059 at 298.190 kb on + strand, within GFF1059 at 298.190 kb on + strand, within GFF1059 at 298.206 kb on - strand, within GFF1059 at 298.239 kb on + strand, within GFF1059 at 298.239 kb on + strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.240 kb on - strand, within GFF1059 at 298.260 kb on - strand, within GFF1059 at 298.260 kb on - strand, within GFF1059 at 298.260 kb on - strand, within GFF1059 at 298.307 kb on - strand, within GFF1059 at 298.313 kb on + strand, within GFF1059 at 298.326 kb on + strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.327 kb on - strand, within GFF1059 at 298.358 kb on + strand, within GFF1059 at 298.358 kb on + strand, within GFF1059 at 298.359 kb on - strand, within GFF1059 at 298.359 kb on - strand, within GFF1059 at 298.379 kb on + strand, within GFF1059 at 298.380 kb on - strand, within GFF1059 at 298.380 kb on - strand, within GFF1059 at 298.397 kb on - strand, within GFF1059 at 298.473 kb on + strand, within GFF1059 at 298.483 kb on - strand, within GFF1059 at 298.483 kb on - strand, within GFF1059 at 298.528 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.574 kb on + strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.575 kb on - strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.583 kb on + strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.584 kb on - strand, within GFF1059 at 298.585 kb on + strand, within GFF1059 at 298.585 kb on + strand, within GFF1059 at 298.585 kb on + strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.586 kb on - strand, within GFF1059 at 298.617 kb on - strand, within GFF1059 at 298.617 kb on - strand, within GFF1059 at 298.639 kb on + strand, within GFF1059 at 298.667 kb on - strand, within GFF1059 at 298.703 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.754 kb on - strand, within GFF1059 at 298.770 kb on + strand, within GFF1059 at 298.792 kb on + strand, within GFF1059 at 298.793 kb on - strand, within GFF1059 at 298.793 kb on - strand, within GFF1059 at 298.797 kb on + strand, within GFF1059 at 298.797 kb on + strand, within GFF1059 at 298.798 kb on - strand, within GFF1059 at 298.798 kb on - strand, within GFF1059 at 298.824 kb on - strand, within GFF1059 at 298.824 kb on - strand, within GFF1059 at 298.895 kb on - strand, within GFF1059 at 298.918 kb on - strand, within GFF1059 at 298.941 kb on + strand, within GFF1059 at 298.941 kb on + strand, within GFF1059 at 298.941 kb on + strand, within GFF1059 at 298.942 kb on - strand, within GFF1059 at 298.942 kb on - strand, within GFF1059 at 298.942 kb on - strand, within GFF1059 at 298.977 kb on + strand, within GFF1059 at 298.978 kb on - strand, within GFF1059 at 298.978 kb on - strand, within GFF1059 at 299.037 kb on + strand, within GFF1059 at 299.087 kb on + strand, within GFF1059 at 299.088 kb on - strand, within GFF1059 at 299.088 kb on - strand, within GFF1059 at 299.136 kb on - strand, within GFF1059 at 299.166 kb on - strand, within GFF1059 at 299.197 kb on + strand, within GFF1059 at 299.201 kb on - strand, within GFF1059 at 299.243 kb on - strand, within GFF1059 at 299.243 kb on - strand, within GFF1059 at 299.243 kb on - strand, within GFF1059 at 299.279 kb on + strand, within GFF1059 at 299.347 kb on + strand at 299.347 kb on + strand at 299.348 kb on - strand at 299.385 kb on + strand at 299.386 kb on - strand at 299.476 kb on + strand at 299.511 kb on + strand at 299.511 kb on + strand at 299.512 kb on - strand at 299.512 kb on - strand at 299.531 kb on + strand at 299.531 kb on + strand at 299.531 kb on + strand at 299.532 kb on - strand at 299.532 kb on - strand at 299.536 kb on + strand at 299.536 kb on + strand at 299.541 kb on + strand at 299.541 kb on + strand at 299.541 kb on + strand at 299.577 kb on + strand at 299.620 kb on + strand at 299.653 kb on + strand, within GFF1060 at 299.779 kb on + strand, within GFF1060 at 299.779 kb on + strand, within GFF1060 at 299.811 kb on + strand, within GFF1060 at 299.811 kb on + strand, within GFF1060 at 299.812 kb on - strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.876 kb on + strand, within GFF1060 at 299.877 kb on - strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 299.880 kb on + strand, within GFF1060 at 300.034 kb on - strand, within GFF1060 at 300.093 kb on + strand at 300.093 kb on + strand at 300.136 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 296,615 + +0.0 296,615 + -1.0 296,615 + -0.7 296,615 + -1.8 296,615 + -0.3 296,616 - -2.3 296,616 - -1.2 296,616 - -1.3 296,636 + -0.6 296,636 + +0.0 296,672 - -0.7 296,672 - -1.7 296,672 - -0.8 296,684 + -1.0 296,704 + -0.3 296,704 + -0.3 296,709 + -1.6 296,710 - -0.4 296,745 + -0.8 296,748 - -0.3 296,764 - -1.3 296,778 + -1.6 296,778 + -0.3 296,778 + +0.0 296,778 + -0.6 296,778 + -0.3 296,778 + -1.3 296,779 - -0.7 296,779 - -1.7 296,779 - -0.1 296,779 - +0.2 296,779 - +0.0 296,779 - +0.8 296,779 - -1.0 296,891 + GFF1058 0.13 -0.7 296,892 - GFF1058 0.14 -0.3 296,928 + GFF1058 0.18 -0.6 297,008 + GFF1058 0.27 +0.0 297,039 + GFF1058 0.31 -0.4 297,039 + GFF1058 0.31 -1.0 297,039 + GFF1058 0.31 -2.4 297,040 - GFF1058 0.31 +1.3 297,040 - GFF1058 0.31 -0.3 297,040 - GFF1058 0.31 -0.2 297,040 - GFF1058 0.31 -0.4 297,114 + GFF1058 0.40 -0.6 297,114 + GFF1058 0.40 -0.8 297,114 + GFF1058 0.40 -0.8 297,114 + GFF1058 0.40 -0.6 297,114 + GFF1058 0.40 -0.1 297,114 + GFF1058 0.40 -1.3 297,114 + GFF1058 0.40 -0.6 297,114 + GFF1058 0.40 +0.0 297,114 + GFF1058 0.40 -1.6 297,114 + GFF1058 0.40 -0.7 297,114 + GFF1058 0.40 -1.4 297,114 + GFF1058 0.40 -0.3 297,115 - GFF1058 0.40 -2.3 297,115 - GFF1058 0.40 -0.3 297,115 - GFF1058 0.40 -0.7 297,115 - GFF1058 0.40 -0.8 297,115 - GFF1058 0.40 -0.5 297,115 - GFF1058 0.40 -0.4 297,115 - GFF1058 0.40 -1.2 297,273 + GFF1058 0.59 -0.6 297,318 + GFF1058 0.65 -1.0 297,319 - GFF1058 0.65 -2.4 297,319 - GFF1058 0.65 -0.6 297,378 - GFF1058 0.72 +0.2 297,465 + GFF1058 0.82 -0.1 297,466 - GFF1058 0.82 +1.4 297,466 - GFF1058 0.82 -0.5 297,466 - GFF1058 0.82 -2.1 297,539 - +0.6 297,539 - -1.0 297,546 + -0.3 297,546 + -1.0 297,547 - -0.9 297,547 - +0.0 297,588 + -1.3 297,589 - -0.7 297,589 - -1.0 297,589 - +0.4 297,610 + +0.1 297,611 - -1.0 297,684 + -0.6 297,685 - -0.1 297,749 - +0.7 297,774 + +0.7 297,775 - -0.0 297,804 + GFF1059 0.10 -0.2 297,805 - GFF1059 0.11 -1.0 297,825 + GFF1059 0.12 -0.1 297,825 + GFF1059 0.12 -1.0 297,864 + GFF1059 0.14 -1.6 297,865 - GFF1059 0.14 -0.4 297,865 - GFF1059 0.14 +0.5 297,962 + GFF1059 0.19 -0.1 297,963 - GFF1059 0.19 +0.3 297,963 - GFF1059 0.19 -0.8 297,963 - GFF1059 0.19 -1.0 298,014 - GFF1059 0.22 -0.2 298,014 - GFF1059 0.22 -1.1 298,063 + GFF1059 0.24 -1.8 298,063 + GFF1059 0.24 -2.1 298,063 + GFF1059 0.24 -1.0 298,064 - GFF1059 0.24 +0.3 298,064 - GFF1059 0.24 +0.2 298,064 - GFF1059 0.24 -1.3 298,125 + GFF1059 0.28 -0.3 298,125 + GFF1059 0.28 -1.1 298,126 - GFF1059 0.28 -1.3 298,168 + GFF1059 0.30 +0.0 298,169 - GFF1059 0.30 +1.6 298,169 - GFF1059 0.30 +0.0 298,185 + GFF1059 0.31 -0.8 298,190 + GFF1059 0.31 +0.2 298,190 + GFF1059 0.31 -0.1 298,206 - GFF1059 0.32 -0.1 298,239 + GFF1059 0.34 -0.6 298,239 + GFF1059 0.34 +1.4 298,240 - GFF1059 0.34 +1.6 298,240 - GFF1059 0.34 -0.2 298,240 - GFF1059 0.34 -1.4 298,240 - GFF1059 0.34 -2.3 298,260 - GFF1059 0.35 -2.0 298,260 - GFF1059 0.35 +0.8 298,260 - GFF1059 0.35 -0.3 298,307 - GFF1059 0.37 +0.0 298,313 + GFF1059 0.38 -1.9 298,326 + GFF1059 0.38 -0.6 298,327 - GFF1059 0.39 +0.4 298,327 - GFF1059 0.39 -0.0 298,327 - GFF1059 0.39 -1.1 298,327 - GFF1059 0.39 -1.2 298,358 + GFF1059 0.40 +0.6 298,358 + GFF1059 0.40 -0.3 298,359 - GFF1059 0.40 -1.1 298,359 - GFF1059 0.40 -0.8 298,379 + GFF1059 0.41 -0.6 298,380 - GFF1059 0.41 -0.1 298,380 - GFF1059 0.41 +0.3 298,397 - GFF1059 0.42 -0.7 298,473 + GFF1059 0.46 -1.0 298,483 - GFF1059 0.47 -1.0 298,483 - GFF1059 0.47 -1.7 298,528 + GFF1059 0.49 +0.0 298,574 + GFF1059 0.52 -1.0 298,574 + GFF1059 0.52 -0.1 298,574 + GFF1059 0.52 +0.2 298,574 + GFF1059 0.52 +0.0 298,575 - GFF1059 0.52 -0.5 298,575 - GFF1059 0.52 -0.7 298,575 - GFF1059 0.52 -1.3 298,575 - GFF1059 0.52 -1.3 298,583 + GFF1059 0.52 -0.6 298,583 + GFF1059 0.52 -2.6 298,583 + GFF1059 0.52 +0.9 298,583 + GFF1059 0.52 +0.4 298,583 + GFF1059 0.52 +0.6 298,583 + GFF1059 0.52 -1.6 298,583 + GFF1059 0.52 -0.6 298,583 + GFF1059 0.52 -1.0 298,583 + GFF1059 0.52 -1.0 298,584 - GFF1059 0.52 -1.0 298,584 - GFF1059 0.52 -1.8 298,584 - GFF1059 0.52 -0.7 298,584 - GFF1059 0.52 -0.6 298,584 - GFF1059 0.52 -1.1 298,584 - GFF1059 0.52 -0.9 298,584 - GFF1059 0.52 -1.4 298,584 - GFF1059 0.52 -1.3 298,584 - GFF1059 0.52 +0.4 298,584 - GFF1059 0.52 -1.6 298,584 - GFF1059 0.52 -0.8 298,585 + GFF1059 0.52 -1.3 298,585 + GFF1059 0.52 -0.5 298,585 + GFF1059 0.52 -0.5 298,586 - GFF1059 0.52 -1.3 298,586 - GFF1059 0.52 +0.8 298,586 - GFF1059 0.52 -2.0 298,586 - GFF1059 0.52 -0.8 298,586 - GFF1059 0.52 +0.9 298,617 - GFF1059 0.54 -1.1 298,617 - GFF1059 0.54 -0.2 298,639 + GFF1059 0.55 -1.1 298,667 - GFF1059 0.57 -0.3 298,703 - GFF1059 0.59 +0.4 298,754 - GFF1059 0.61 -1.6 298,754 - GFF1059 0.61 -1.8 298,754 - GFF1059 0.61 -0.6 298,754 - GFF1059 0.61 -0.1 298,770 + GFF1059 0.62 -0.4 298,792 + GFF1059 0.63 -1.0 298,793 - GFF1059 0.64 +0.0 298,793 - GFF1059 0.64 -0.1 298,797 + GFF1059 0.64 -1.0 298,797 + GFF1059 0.64 -1.0 298,798 - GFF1059 0.64 -0.3 298,798 - GFF1059 0.64 +0.3 298,824 - GFF1059 0.65 -1.1 298,824 - GFF1059 0.65 -0.4 298,895 - GFF1059 0.69 -0.6 298,918 - GFF1059 0.70 -1.2 298,941 + GFF1059 0.71 -0.3 298,941 + GFF1059 0.71 -0.9 298,941 + GFF1059 0.71 +0.3 298,942 - GFF1059 0.72 +0.0 298,942 - GFF1059 0.72 -0.3 298,942 - GFF1059 0.72 -1.0 298,977 + GFF1059 0.73 +0.0 298,978 - GFF1059 0.73 -1.0 298,978 - GFF1059 0.73 -0.4 299,037 + GFF1059 0.77 +0.0 299,087 + GFF1059 0.79 -1.0 299,088 - GFF1059 0.79 -1.6 299,088 - GFF1059 0.79 -1.0 299,136 - GFF1059 0.82 -0.3 299,166 - GFF1059 0.84 +0.3 299,197 + GFF1059 0.85 +1.0 299,201 - GFF1059 0.85 -0.6 299,243 - GFF1059 0.88 +0.0 299,243 - GFF1059 0.88 -0.4 299,243 - GFF1059 0.88 -1.0 299,279 + GFF1059 0.90 -1.1 299,347 + +0.3 299,347 + -1.5 299,348 - -0.6 299,385 + -0.1 299,386 - +0.5 299,476 + +1.0 299,511 + -0.7 299,511 + -0.8 299,512 - +1.3 299,512 - -0.1 299,531 + -1.3 299,531 + -0.3 299,531 + -1.0 299,532 - -0.3 299,532 - -0.1 299,536 + +0.3 299,536 + -1.0 299,541 + -0.3 299,541 + -0.5 299,541 + -0.5 299,577 + -0.8 299,620 + -1.3 299,653 + GFF1060 0.10 -1.3 299,779 + GFF1060 0.33 -0.6 299,779 + GFF1060 0.33 -2.4 299,811 + GFF1060 0.39 -0.5 299,811 + GFF1060 0.39 +0.0 299,812 - GFF1060 0.39 -1.0 299,876 + GFF1060 0.51 -0.5 299,876 + GFF1060 0.51 -0.9 299,876 + GFF1060 0.51 -2.0 299,876 + GFF1060 0.51 -1.3 299,877 - GFF1060 0.51 +0.0 299,880 + GFF1060 0.52 -1.4 299,880 + GFF1060 0.52 +0.0 299,880 + GFF1060 0.52 -1.2 299,880 + GFF1060 0.52 +0.0 300,034 - GFF1060 0.81 +1.0 300,093 + +0.6 300,093 + -0.5 300,136 + -1.1
Or see this region's nucleotide sequence