Experiment: RPMI_TSB_serum temperature; 35C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS07710 and RR41_RS07715 are separated by 8 nucleotides RR41_RS07715 and RR41_RS07720 overlap by 29 nucleotides RR41_RS07720 and RR41_RS07725 are separated by 1 nucleotides RR41_RS07725 and RR41_RS07730 are separated by 1 nucleotides RR41_RS07730 and RR41_RS07735 are separated by 108 nucleotides RR41_RS07735 and RR41_RS07740 overlap by 26 nucleotides
RR41_RS07710: RR41_RS07710 - glutamate 5-kinase, at 1,594,351 to 1,594,719
_RS07710
RR41_RS07715: RR41_RS07715 - hypothetical protein, at 1,594,728 to 1,595,135
_RS07715
RR41_RS07720: RR41_RS07720 - hypothetical protein, at 1,595,107 to 1,595,475
_RS07720
RR41_RS07725: RR41_RS07725 - hypothetical protein, at 1,595,477 to 1,595,875
_RS07725
RR41_RS07730: RR41_RS07730 - hypothetical protein, at 1,595,877 to 1,596,095
_RS07730
RR41_RS07735: RR41_RS07735 - SH3 domain-containing protein, at 1,596,204 to 1,596,461
_RS07735
RR41_RS07740: RR41_RS07740 - phage tail tape measure protein, at 1,596,436 to 1,598,766
_RS07740
Position (kb) 1595
1596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1594.477 kb on + strand, within RR41_RS07710 at 1594.478 kb on - strand, within RR41_RS07710 at 1594.528 kb on + strand, within RR41_RS07710 at 1594.528 kb on + strand, within RR41_RS07710 at 1594.601 kb on + strand, within RR41_RS07710 at 1594.760 kb on + strand at 1594.785 kb on + strand, within RR41_RS07715 at 1594.881 kb on - strand, within RR41_RS07715 at 1594.902 kb on + strand, within RR41_RS07715 at 1595.082 kb on + strand, within RR41_RS07715 at 1595.083 kb on - strand, within RR41_RS07715 at 1595.216 kb on + strand, within RR41_RS07720 at 1595.254 kb on - strand, within RR41_RS07720 at 1595.359 kb on + strand, within RR41_RS07720 at 1595.432 kb on - strand, within RR41_RS07720 at 1595.510 kb on - strand at 1595.510 kb on - strand at 1595.521 kb on + strand, within RR41_RS07725 at 1595.656 kb on + strand, within RR41_RS07725 at 1595.656 kb on + strand, within RR41_RS07725 at 1595.666 kb on - strand, within RR41_RS07725 at 1595.846 kb on - strand at 1595.876 kb on + strand at 1595.989 kb on + strand, within RR41_RS07730 at 1595.989 kb on + strand, within RR41_RS07730 at 1596.010 kb on + strand, within RR41_RS07730 at 1596.067 kb on + strand, within RR41_RS07730 at 1596.068 kb on - strand, within RR41_RS07730 at 1596.145 kb on - strand at 1596.145 kb on - strand at 1596.145 kb on - strand at 1596.198 kb on + strand at 1596.332 kb on + strand, within RR41_RS07735 at 1596.350 kb on + strand, within RR41_RS07735 at 1596.372 kb on - strand, within RR41_RS07735 at 1596.394 kb on + strand, within RR41_RS07735 at 1596.398 kb on - strand, within RR41_RS07735 at 1596.505 kb on - strand at 1596.605 kb on + strand at 1596.759 kb on + strand, within RR41_RS07740 at 1596.762 kb on + strand, within RR41_RS07740 at 1596.773 kb on - strand, within RR41_RS07740 at 1596.793 kb on + strand, within RR41_RS07740 at 1596.824 kb on + strand, within RR41_RS07740 at 1596.831 kb on + strand, within RR41_RS07740 at 1596.832 kb on - strand, within RR41_RS07740
Per-strain Table
Position Strand Gene LocusTag Fraction RPMI_TSB_serum temperature; 35C remove 1,594,477 + RR41_RS07710 0.34 -1.6 1,594,478 - RR41_RS07710 0.34 -1.0 1,594,528 + RR41_RS07710 0.48 +0.0 1,594,528 + RR41_RS07710 0.48 -1.0 1,594,601 + RR41_RS07710 0.68 +0.0 1,594,760 + +0.7 1,594,785 + RR41_RS07715 0.14 +0.7 1,594,881 - RR41_RS07715 0.38 +0.1 1,594,902 + RR41_RS07715 0.43 +0.2 1,595,082 + RR41_RS07715 0.87 +0.0 1,595,083 - RR41_RS07715 0.87 +0.0 1,595,216 + RR41_RS07720 0.30 -0.4 1,595,254 - RR41_RS07720 0.40 -2.0 1,595,359 + RR41_RS07720 0.68 -2.0 1,595,432 - RR41_RS07720 0.88 +0.6 1,595,510 - -1.6 1,595,510 - -1.0 1,595,521 + RR41_RS07725 0.11 -2.3 1,595,656 + RR41_RS07725 0.45 -1.2 1,595,656 + RR41_RS07725 0.45 -2.8 1,595,666 - RR41_RS07725 0.47 -1.3 1,595,846 - +0.0 1,595,876 + -2.3 1,595,989 + RR41_RS07730 0.51 -2.3 1,595,989 + RR41_RS07730 0.51 -1.6 1,596,010 + RR41_RS07730 0.61 -1.6 1,596,067 + RR41_RS07730 0.87 -3.8 1,596,068 - RR41_RS07730 0.87 +0.0 1,596,145 - -1.0 1,596,145 - -0.8 1,596,145 - -2.0 1,596,198 + +0.2 1,596,332 + RR41_RS07735 0.50 +0.3 1,596,350 + RR41_RS07735 0.57 -1.0 1,596,372 - RR41_RS07735 0.65 -1.3 1,596,394 + RR41_RS07735 0.74 +1.6 1,596,398 - RR41_RS07735 0.75 +0.0 1,596,505 - +0.0 1,596,605 + -0.7 1,596,759 + RR41_RS07740 0.14 -0.7 1,596,762 + RR41_RS07740 0.14 -1.6 1,596,773 - RR41_RS07740 0.14 -3.2 1,596,793 + RR41_RS07740 0.15 +0.3 1,596,824 + RR41_RS07740 0.17 +1.0 1,596,831 + RR41_RS07740 0.17 -3.2 1,596,832 - RR41_RS07740 0.17 -1.3
Or see this region's nucleotide sequence