Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06699 and MPMX19_06700 are separated by 10 nucleotides MPMX19_06700 and MPMX19_06701 are separated by 96 nucleotides MPMX19_06701 and MPMX19_06702 are separated by 40 nucleotides MPMX19_06702 and MPMX19_06703 are separated by 82 nucleotides MPMX19_06703 and MPMX19_06704 are separated by 297 nucleotides
MPMX19_06699: MPMX19_06699 - Nickel/cobalt efflux system RcnA, at 267,962 to 268,831
_06699
MPMX19_06700: MPMX19_06700 - Copper-sensing transcriptional repressor RicR, at 268,842 to 269,111
_06700
MPMX19_06701: MPMX19_06701 - hypothetical protein, at 269,208 to 269,687
_06701
MPMX19_06702: MPMX19_06702 - Cadmium-transporting ATPase, at 269,728 to 272,016
_06702
MPMX19_06703: MPMX19_06703 - HTH-type transcriptional regulator HmrR, at 272,099 to 272,554
_06703
MPMX19_06704: MPMX19_06704 - Sensor histidine kinase RcsC, at 272,852 to 275,101
_06704
Position (kb) 269
270
271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.843 kb on + strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.844 kb on - strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.849 kb on + strand at 268.850 kb on - strand at 268.850 kb on - strand at 268.850 kb on - strand at 268.850 kb on - strand at 269.042 kb on + strand, within MPMX19_06700 at 269.042 kb on + strand, within MPMX19_06700 at 269.043 kb on - strand, within MPMX19_06700 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.263 kb on + strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.264 kb on - strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.282 kb on + strand, within MPMX19_06701 at 269.283 kb on - strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.395 kb on + strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.396 kb on - strand, within MPMX19_06701 at 269.835 kb on + strand at 269.836 kb on - strand at 269.836 kb on - strand at 269.836 kb on - strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.884 kb on + strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 269.885 kb on - strand at 270.794 kb on + strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.795 kb on - strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.878 kb on + strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 270.879 kb on - strand, within MPMX19_06702 at 272.065 kb on + strand at 272.066 kb on - strand at 272.066 kb on - strand at 272.066 kb on - strand at 272.195 kb on + strand, within MPMX19_06703 at 272.195 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.198 kb on + strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.199 kb on - strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.255 kb on + strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.256 kb on - strand, within MPMX19_06703 at 272.658 kb on + strand at 272.658 kb on + strand at 272.658 kb on + strand at 272.658 kb on + strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.659 kb on - strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.696 kb on + strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.697 kb on - strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.698 kb on + strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.699 kb on - strand at 272.729 kb on + strand at 272.730 kb on + strand at 272.730 kb on + strand at 272.730 kb on + strand at 272.731 kb on - strand at 272.731 kb on - strand at 272.731 kb on - strand at 272.731 kb on - strand at 272.788 kb on + strand at 272.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 268,843 + +0.3 268,843 + -0.9 268,843 + +0.1 268,843 + -2.1 268,843 + -0.2 268,844 - +0.5 268,844 - -1.3 268,844 - -0.5 268,844 - +1.2 268,844 - -2.4 268,849 + +0.1 268,849 + -0.6 268,849 + -1.5 268,849 + -0.7 268,849 + -0.8 268,849 + +0.0 268,849 + -0.9 268,849 + -0.2 268,849 + -0.0 268,849 + -0.9 268,849 + -1.6 268,849 + -0.7 268,849 + -1.1 268,850 - -1.1 268,850 - -2.0 268,850 - -0.4 268,850 - -0.0 269,042 + MPMX19_06700 0.74 +0.5 269,042 + MPMX19_06700 0.74 -0.4 269,043 - MPMX19_06700 0.74 -0.1 269,263 + MPMX19_06701 0.11 -2.6 269,263 + MPMX19_06701 0.11 -0.2 269,263 + MPMX19_06701 0.11 -0.4 269,263 + MPMX19_06701 0.11 -1.0 269,263 + MPMX19_06701 0.11 +0.4 269,264 - MPMX19_06701 0.12 +0.1 269,264 - MPMX19_06701 0.12 -2.0 269,264 - MPMX19_06701 0.12 -0.1 269,264 - MPMX19_06701 0.12 -0.9 269,264 - MPMX19_06701 0.12 +0.8 269,264 - MPMX19_06701 0.12 +0.7 269,264 - MPMX19_06701 0.12 -0.3 269,264 - MPMX19_06701 0.12 -0.7 269,282 + MPMX19_06701 0.15 -2.1 269,282 + MPMX19_06701 0.15 +1.4 269,282 + MPMX19_06701 0.15 +0.5 269,283 - MPMX19_06701 0.16 -1.3 269,395 + MPMX19_06701 0.39 +1.1 269,395 + MPMX19_06701 0.39 -0.9 269,395 + MPMX19_06701 0.39 -1.0 269,395 + MPMX19_06701 0.39 -1.2 269,395 + MPMX19_06701 0.39 +0.8 269,395 + MPMX19_06701 0.39 -1.8 269,395 + MPMX19_06701 0.39 -0.4 269,395 + MPMX19_06701 0.39 -0.9 269,395 + MPMX19_06701 0.39 +0.8 269,395 + MPMX19_06701 0.39 -1.5 269,395 + MPMX19_06701 0.39 -0.1 269,396 - MPMX19_06701 0.39 -1.4 269,396 - MPMX19_06701 0.39 +0.1 269,396 - MPMX19_06701 0.39 -1.7 269,396 - MPMX19_06701 0.39 -1.1 269,396 - MPMX19_06701 0.39 +0.7 269,835 + -0.1 269,836 - +0.2 269,836 - -0.2 269,836 - -1.1 269,884 + +0.4 269,884 + -0.3 269,884 + +0.1 269,884 + -1.1 269,884 + -2.2 269,884 + +0.3 269,884 + -0.4 269,884 + -0.6 269,884 + -0.3 269,884 + -0.8 269,884 + -1.8 269,884 + +0.7 269,884 + -0.2 269,884 + +0.1 269,884 + +0.6 269,884 + -0.1 269,884 + -1.2 269,884 + +0.0 269,884 + +0.2 269,884 + -1.2 269,884 + -0.7 269,884 + -0.3 269,884 + -2.4 269,884 + +0.3 269,884 + -0.9 269,884 + -0.8 269,884 + +0.1 269,884 + +0.5 269,884 + +0.8 269,884 + -0.9 269,884 + +0.3 269,884 + +0.6 269,884 + +0.2 269,884 + +1.0 269,884 + +0.2 269,884 + -1.4 269,884 + -0.3 269,884 + -1.9 269,884 + +0.0 269,884 + -0.1 269,884 + -0.7 269,885 - +0.7 269,885 - -3.1 269,885 - -0.8 269,885 - -1.4 269,885 - -0.8 269,885 - -1.6 269,885 - -0.7 269,885 - -0.8 269,885 - -1.9 269,885 - -1.6 269,885 - -0.6 269,885 - -1.1 269,885 - -0.7 269,885 - -0.6 269,885 - -1.1 269,885 - -0.6 269,885 - -0.4 269,885 - +0.2 269,885 - +0.4 269,885 - -1.2 269,885 - -0.9 269,885 - -0.4 269,885 - -0.7 269,885 - -0.7 269,885 - +0.1 269,885 - +1.5 269,885 - +0.6 269,885 - -0.9 269,885 - -0.4 269,885 - -2.1 269,885 - -0.3 269,885 - -0.2 269,885 - -0.8 269,885 - -1.2 269,885 - -2.0 269,885 - +0.1 269,885 - +1.3 269,885 - -1.9 269,885 - -0.4 269,885 - -0.7 270,794 + MPMX19_06702 0.47 -1.9 270,795 - MPMX19_06702 0.47 +0.0 270,795 - MPMX19_06702 0.47 -1.1 270,795 - MPMX19_06702 0.47 -0.7 270,795 - MPMX19_06702 0.47 +0.0 270,878 + MPMX19_06702 0.50 +0.8 270,878 + MPMX19_06702 0.50 -0.2 270,878 + MPMX19_06702 0.50 -0.2 270,878 + MPMX19_06702 0.50 +0.6 270,878 + MPMX19_06702 0.50 -1.4 270,878 + MPMX19_06702 0.50 -0.3 270,878 + MPMX19_06702 0.50 +0.7 270,878 + MPMX19_06702 0.50 +0.6 270,878 + MPMX19_06702 0.50 -0.9 270,879 - MPMX19_06702 0.50 +0.6 270,879 - MPMX19_06702 0.50 +0.5 270,879 - MPMX19_06702 0.50 -0.4 270,879 - MPMX19_06702 0.50 +0.2 270,879 - MPMX19_06702 0.50 -0.3 270,879 - MPMX19_06702 0.50 +0.2 270,879 - MPMX19_06702 0.50 -0.0 270,879 - MPMX19_06702 0.50 -1.2 270,879 - MPMX19_06702 0.50 -0.1 272,065 + +1.1 272,066 - -0.2 272,066 - +0.0 272,066 - -0.1 272,195 + MPMX19_06703 0.21 -0.4 272,195 + MPMX19_06703 0.21 +0.8 272,198 + MPMX19_06703 0.22 -1.3 272,198 + MPMX19_06703 0.22 +0.6 272,198 + MPMX19_06703 0.22 -0.6 272,198 + MPMX19_06703 0.22 -0.1 272,198 + MPMX19_06703 0.22 -0.8 272,198 + MPMX19_06703 0.22 -0.5 272,198 + MPMX19_06703 0.22 -0.9 272,198 + MPMX19_06703 0.22 -0.4 272,198 + MPMX19_06703 0.22 -2.3 272,198 + MPMX19_06703 0.22 -0.7 272,198 + MPMX19_06703 0.22 -0.8 272,198 + MPMX19_06703 0.22 -2.3 272,198 + MPMX19_06703 0.22 -0.1 272,199 - MPMX19_06703 0.22 -0.4 272,199 - MPMX19_06703 0.22 +0.4 272,199 - MPMX19_06703 0.22 -1.2 272,199 - MPMX19_06703 0.22 +0.3 272,199 - MPMX19_06703 0.22 +1.3 272,199 - MPMX19_06703 0.22 -0.6 272,199 - MPMX19_06703 0.22 +0.6 272,255 + MPMX19_06703 0.34 -1.1 272,255 + MPMX19_06703 0.34 -0.9 272,255 + MPMX19_06703 0.34 -1.3 272,255 + MPMX19_06703 0.34 +0.3 272,255 + MPMX19_06703 0.34 -1.0 272,255 + MPMX19_06703 0.34 -0.7 272,256 - MPMX19_06703 0.34 -0.6 272,256 - MPMX19_06703 0.34 -0.9 272,256 - MPMX19_06703 0.34 -1.5 272,256 - MPMX19_06703 0.34 -1.2 272,256 - MPMX19_06703 0.34 -0.9 272,256 - MPMX19_06703 0.34 +0.2 272,256 - MPMX19_06703 0.34 -0.2 272,256 - MPMX19_06703 0.34 +0.1 272,256 - MPMX19_06703 0.34 -1.5 272,256 - MPMX19_06703 0.34 -0.5 272,256 - MPMX19_06703 0.34 -1.0 272,256 - MPMX19_06703 0.34 -1.6 272,256 - MPMX19_06703 0.34 +0.2 272,658 + +0.8 272,658 + -0.4 272,658 + +0.1 272,658 + -0.4 272,659 - -0.3 272,659 - +0.2 272,659 - +0.6 272,659 - -2.1 272,659 - +1.3 272,659 - +0.0 272,659 - +0.3 272,696 + -0.5 272,696 + +0.5 272,696 + -0.7 272,696 + -2.0 272,696 + +1.5 272,696 + +0.3 272,696 + +0.0 272,697 - +0.3 272,697 - -0.7 272,697 - +0.0 272,697 - -0.6 272,697 - -0.4 272,697 - -0.3 272,697 - -0.4 272,697 - -0.5 272,698 + -0.5 272,698 + -0.3 272,698 + -0.3 272,698 + -1.4 272,698 + -1.3 272,698 + -0.6 272,698 + -1.3 272,698 + -1.4 272,698 + -0.1 272,698 + -1.1 272,699 - +0.8 272,699 - +0.1 272,699 - -0.8 272,699 - -2.0 272,699 - -0.5 272,699 - +0.5 272,699 - -1.1 272,699 - -0.6 272,699 - -1.1 272,699 - -0.1 272,699 - -1.5 272,699 - -0.6 272,699 - -1.1 272,699 - -1.5 272,729 + -0.1 272,730 + +0.9 272,730 + -1.7 272,730 + -1.4 272,731 - +0.4 272,731 - +0.1 272,731 - +0.5 272,731 - -1.0 272,788 + -0.8 272,788 + +0.2
Or see this region's nucleotide sequence