Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06669

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06668 and MPMX19_06669 are separated by 182 nucleotidesMPMX19_06669 and MPMX19_06670 are separated by 450 nucleotides MPMX19_06668: MPMX19_06668 - 2-deoxystreptamine glucosyltransferase, at 228,855 to 230,084 _06668 MPMX19_06669: MPMX19_06669 - hypothetical protein, at 230,267 to 231,907 _06669 MPMX19_06670: MPMX19_06670 - hypothetical protein, at 232,358 to 233,767 _06670 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.660 kb on + strand, within MPMX19_06668at 229.661 kb on - strand, within MPMX19_06668at 229.661 kb on - strand, within MPMX19_06668at 229.661 kb on - strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.678 kb on + strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.679 kb on - strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.720 kb on + strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.721 kb on - strand, within MPMX19_06668at 229.780 kb on + strand, within MPMX19_06668at 229.780 kb on + strand, within MPMX19_06668at 229.781 kb on - strand, within MPMX19_06668at 229.781 kb on - strand, within MPMX19_06668at 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.059 kb on + strandat 230.060 kb on - strandat 230.060 kb on - strandat 230.060 kb on - strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.271 kb on + strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.272 kb on - strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.387 kb on + strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.388 kb on - strandat 230.591 kb on + strand, within MPMX19_06669at 230.591 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.732 kb on + strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.733 kb on - strand, within MPMX19_06669at 230.837 kb on + strand, within MPMX19_06669at 230.837 kb on + strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.838 kb on - strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 230.999 kb on + strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.000 kb on - strand, within MPMX19_06669at 231.101 kb on + strand, within MPMX19_06669at 231.101 kb on + strand, within MPMX19_06669at 231.102 kb on - strand, within MPMX19_06669at 231.102 kb on - strand, within MPMX19_06669at 231.102 kb on - strand, within MPMX19_06669at 231.143 kb on + strand, within MPMX19_06669at 231.143 kb on + strand, within MPMX19_06669at 231.143 kb on + strand, within MPMX19_06669at 231.143 kb on + strand, within MPMX19_06669at 231.143 kb on + strand, within MPMX19_06669at 231.375 kb on - strand, within MPMX19_06669at 231.375 kb on - strand, within MPMX19_06669at 231.906 kb on - strandat 232.026 kb on + strandat 232.026 kb on + strandat 232.026 kb on + strandat 232.027 kb on - strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.028 kb on + strandat 232.029 kb on - strandat 232.029 kb on - strandat 232.029 kb on - strandat 232.092 kb on + strandat 232.092 kb on + strandat 232.093 kb on - strandat 232.108 kb on + strandat 232.109 kb on - strandat 232.109 kb on - strandat 232.109 kb on - strandat 232.109 kb on - strandat 232.170 kb on + strandat 232.170 kb on + strandat 232.170 kb on + strandat 232.170 kb on + strandat 232.170 kb on + strandat 232.170 kb on + strandat 232.170 kb on + strandat 232.170 kb on + strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.171 kb on - strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.172 kb on + strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.173 kb on - strandat 232.270 kb on + strandat 232.271 kb on - strandat 232.271 kb on - strandat 232.754 kb on + strand, within MPMX19_06670at 232.754 kb on + strand, within MPMX19_06670at 232.755 kb on - strand, within MPMX19_06670at 232.755 kb on - strand, within MPMX19_06670at 232.775 kb on + strand, within MPMX19_06670at 232.775 kb on + strand, within MPMX19_06670at 232.775 kb on + strand, within MPMX19_06670at 232.775 kb on + strand, within MPMX19_06670at 232.775 kb on + strand, within MPMX19_06670at 232.776 kb on - strand, within MPMX19_06670

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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229,660 + MPMX19_06668 0.65 -2.3
229,660 + MPMX19_06668 0.65 -0.9
229,660 + MPMX19_06668 0.65 -1.2
229,660 + MPMX19_06668 0.65 +0.0
229,660 + MPMX19_06668 0.65 +0.8
229,661 - MPMX19_06668 0.66 +0.8
229,661 - MPMX19_06668 0.66 -0.9
229,661 - MPMX19_06668 0.66 +0.5
229,678 + MPMX19_06668 0.67 +2.6
229,678 + MPMX19_06668 0.67 -0.2
229,678 + MPMX19_06668 0.67 -0.1
229,678 + MPMX19_06668 0.67 -0.1
229,678 + MPMX19_06668 0.67 +0.6
229,678 + MPMX19_06668 0.67 +0.1
229,678 + MPMX19_06668 0.67 +0.3
229,678 + MPMX19_06668 0.67 +0.4
229,678 + MPMX19_06668 0.67 -0.5
229,678 + MPMX19_06668 0.67 -1.2
229,678 + MPMX19_06668 0.67 +0.3
229,679 - MPMX19_06668 0.67 -1.9
229,679 - MPMX19_06668 0.67 -1.7
229,679 - MPMX19_06668 0.67 -1.7
229,679 - MPMX19_06668 0.67 +0.0
229,679 - MPMX19_06668 0.67 -0.5
229,679 - MPMX19_06668 0.67 -1.4
229,720 + MPMX19_06668 0.70 -0.7
229,720 + MPMX19_06668 0.70 -1.1
229,720 + MPMX19_06668 0.70 -1.2
229,720 + MPMX19_06668 0.70 +0.0
229,720 + MPMX19_06668 0.70 -0.1
229,720 + MPMX19_06668 0.70 -0.2
229,720 + MPMX19_06668 0.70 +0.1
229,720 + MPMX19_06668 0.70 +0.0
229,720 + MPMX19_06668 0.70 -2.2
229,721 - MPMX19_06668 0.70 +0.5
229,721 - MPMX19_06668 0.70 -0.8
229,721 - MPMX19_06668 0.70 -1.6
229,721 - MPMX19_06668 0.70 -0.1
229,721 - MPMX19_06668 0.70 -0.6
229,721 - MPMX19_06668 0.70 -0.9
229,721 - MPMX19_06668 0.70 -0.3
229,721 - MPMX19_06668 0.70 -0.4
229,721 - MPMX19_06668 0.70 -0.8
229,721 - MPMX19_06668 0.70 -1.0
229,721 - MPMX19_06668 0.70 -0.3
229,721 - MPMX19_06668 0.70 +0.2
229,721 - MPMX19_06668 0.70 -1.0
229,721 - MPMX19_06668 0.70 +0.2
229,721 - MPMX19_06668 0.70 +0.2
229,780 + MPMX19_06668 0.75 -0.5
229,780 + MPMX19_06668 0.75 -2.0
229,781 - MPMX19_06668 0.75 -0.6
229,781 - MPMX19_06668 0.75 -1.7
230,059 + +0.3
230,059 + +0.4
230,059 + -1.8
230,059 + +0.0
230,059 + -0.9
230,059 + -0.6
230,059 + -0.4
230,059 + -0.5
230,059 + -0.6
230,059 + -0.4
230,059 + +0.3
230,059 + -1.0
230,060 - +0.2
230,060 - -0.4
230,060 - -1.4
230,271 + +0.0
230,271 + -0.2
230,271 + -0.0
230,271 + -1.2
230,271 + -0.6
230,271 + +0.1
230,271 + -1.4
230,271 + -1.3
230,271 + -1.7
230,271 + +0.5
230,271 + +0.9
230,272 - -0.0
230,272 - -1.0
230,272 - -1.9
230,272 - -1.6
230,272 - +0.4
230,272 - -1.7
230,272 - -0.9
230,272 - -0.1
230,272 - -0.5
230,387 + -1.4
230,387 + -0.7
230,387 + -1.9
230,387 + -0.3
230,387 + -0.2
230,387 + +0.1
230,388 - -0.2
230,388 - -1.0
230,388 - +1.6
230,388 - -1.3
230,388 - +0.0
230,388 - -0.4
230,388 - -0.6
230,388 - -0.8
230,388 - -1.0
230,388 - -0.5
230,591 + MPMX19_06669 0.20 -1.4
230,591 + MPMX19_06669 0.20 -0.6
230,732 + MPMX19_06669 0.28 +0.1
230,732 + MPMX19_06669 0.28 -1.3
230,732 + MPMX19_06669 0.28 -1.0
230,732 + MPMX19_06669 0.28 -1.0
230,733 - MPMX19_06669 0.28 -0.9
230,733 - MPMX19_06669 0.28 -2.1
230,733 - MPMX19_06669 0.28 +0.2
230,733 - MPMX19_06669 0.28 -1.2
230,837 + MPMX19_06669 0.35 -1.4
230,837 + MPMX19_06669 0.35 -0.7
230,838 - MPMX19_06669 0.35 -0.6
230,838 - MPMX19_06669 0.35 -0.8
230,838 - MPMX19_06669 0.35 -0.7
230,838 - MPMX19_06669 0.35 -0.7
230,999 + MPMX19_06669 0.45 -0.6
230,999 + MPMX19_06669 0.45 -0.5
230,999 + MPMX19_06669 0.45 -0.9
230,999 + MPMX19_06669 0.45 -0.9
230,999 + MPMX19_06669 0.45 -0.6
230,999 + MPMX19_06669 0.45 -1.6
230,999 + MPMX19_06669 0.45 -0.6
231,000 - MPMX19_06669 0.45 +0.4
231,000 - MPMX19_06669 0.45 +0.2
231,000 - MPMX19_06669 0.45 +1.0
231,000 - MPMX19_06669 0.45 -1.0
231,000 - MPMX19_06669 0.45 -1.6
231,101 + MPMX19_06669 0.51 -0.9
231,101 + MPMX19_06669 0.51 +0.5
231,102 - MPMX19_06669 0.51 -0.3
231,102 - MPMX19_06669 0.51 -1.0
231,102 - MPMX19_06669 0.51 +1.1
231,143 + MPMX19_06669 0.53 +1.2
231,143 + MPMX19_06669 0.53 +0.5
231,143 + MPMX19_06669 0.53 -1.0
231,143 + MPMX19_06669 0.53 -0.1
231,143 + MPMX19_06669 0.53 +0.2
231,375 - MPMX19_06669 0.68 -0.5
231,375 - MPMX19_06669 0.68 -2.3
231,906 - -0.9
232,026 + +0.3
232,026 + -0.9
232,026 + -0.4
232,027 - -0.8
232,028 + -0.9
232,028 + -1.0
232,028 + -1.3
232,028 + -0.1
232,028 + -0.7
232,028 + +0.0
232,028 + +0.8
232,028 + -1.5
232,028 + -0.6
232,028 + -2.0
232,028 + -2.6
232,029 - +0.2
232,029 - -1.0
232,029 - -0.7
232,092 + -1.3
232,092 + +0.0
232,093 - +0.4
232,108 + -1.2
232,109 - -0.3
232,109 - -1.4
232,109 - +0.0
232,109 - -1.8
232,170 + -0.8
232,170 + -1.0
232,170 + +0.2
232,170 + +0.6
232,170 + -2.1
232,170 + -1.0
232,170 + -0.1
232,170 + -1.0
232,171 - -0.9
232,171 - -0.2
232,171 - -0.6
232,171 - +0.1
232,171 - -0.6
232,171 - -0.1
232,171 - -0.4
232,171 - -1.0
232,171 - -1.6
232,171 - -0.3
232,171 - -1.4
232,171 - +0.0
232,171 - -0.4
232,171 - -1.7
232,171 - -0.8
232,172 + -0.7
232,172 + -1.2
232,172 + -0.7
232,172 + +0.8
232,172 + -1.3
232,172 + +0.0
232,172 + -0.7
232,172 + +0.1
232,172 + -0.6
232,172 + -0.7
232,172 + -0.2
232,172 + -0.2
232,172 + -1.9
232,173 - -0.5
232,173 - +0.4
232,173 - +0.1
232,173 - -1.2
232,173 - -0.7
232,173 - -1.4
232,173 - -0.3
232,173 - -0.9
232,270 + -2.0
232,271 - -1.7
232,271 - -0.8
232,754 + MPMX19_06670 0.28 +0.6
232,754 + MPMX19_06670 0.28 -0.3
232,755 - MPMX19_06670 0.28 -0.1
232,755 - MPMX19_06670 0.28 -1.7
232,775 + MPMX19_06670 0.30 +1.1
232,775 + MPMX19_06670 0.30 -0.6
232,775 + MPMX19_06670 0.30 -0.4
232,775 + MPMX19_06670 0.30 +0.1
232,775 + MPMX19_06670 0.30 +0.6
232,776 - MPMX19_06670 0.30 +0.7

Or see this region's nucleotide sequence