Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06506

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06505 and MPMX19_06506 overlap by 4 nucleotidesMPMX19_06506 and MPMX19_06507 are separated by 29 nucleotides MPMX19_06505: MPMX19_06505 - hypothetical protein, at 289,004 to 290,521 _06505 MPMX19_06506: MPMX19_06506 - hypothetical protein, at 290,518 to 290,865 _06506 MPMX19_06507: MPMX19_06507 - hypothetical protein, at 290,895 to 291,938 _06507 Position (kb) 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.619 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 289.622 kb on + strand, within MPMX19_06505at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.686 kb on + strand, within MPMX19_06506at 290.762 kb on - strand, within MPMX19_06506at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.126 kb on + strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.127 kb on - strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.384 kb on + strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.517 kb on - strand, within MPMX19_06507at 291.699 kb on + strand, within MPMX19_06507at 291.699 kb on + strand, within MPMX19_06507at 291.699 kb on + strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.700 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507at 291.832 kb on - strand, within MPMX19_06507

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
289,619 + MPMX19_06505 0.41 -1.7
289,619 + MPMX19_06505 0.41 -1.3
289,619 + MPMX19_06505 0.41 -0.0
289,619 + MPMX19_06505 0.41 -0.4
289,619 + MPMX19_06505 0.41 -1.4
289,619 + MPMX19_06505 0.41 -0.6
289,619 + MPMX19_06505 0.41 -0.3
289,619 + MPMX19_06505 0.41 -0.4
289,619 + MPMX19_06505 0.41 -2.0
289,619 + MPMX19_06505 0.41 -1.4
289,619 + MPMX19_06505 0.41 -2.8
289,622 + MPMX19_06505 0.41 -1.5
289,622 + MPMX19_06505 0.41 +0.7
289,622 + MPMX19_06505 0.41 +0.7
289,622 + MPMX19_06505 0.41 -3.1
289,622 + MPMX19_06505 0.41 -0.4
289,622 + MPMX19_06505 0.41 -0.5
290,686 + MPMX19_06506 0.48 -1.0
290,686 + MPMX19_06506 0.48 -0.3
290,686 + MPMX19_06506 0.48 -0.9
290,686 + MPMX19_06506 0.48 -1.3
290,686 + MPMX19_06506 0.48 -1.6
290,686 + MPMX19_06506 0.48 -1.5
290,762 - MPMX19_06506 0.70 +0.4
291,126 + MPMX19_06507 0.22 +0.8
291,126 + MPMX19_06507 0.22 +1.1
291,126 + MPMX19_06507 0.22 -1.0
291,126 + MPMX19_06507 0.22 -0.4
291,127 - MPMX19_06507 0.22 +0.1
291,127 - MPMX19_06507 0.22 +0.2
291,127 - MPMX19_06507 0.22 +0.7
291,127 - MPMX19_06507 0.22 +0.5
291,384 + MPMX19_06507 0.47 -1.6
291,384 + MPMX19_06507 0.47 -1.8
291,384 + MPMX19_06507 0.47 +0.3
291,384 + MPMX19_06507 0.47 +0.1
291,517 - MPMX19_06507 0.60 +1.0
291,517 - MPMX19_06507 0.60 +1.0
291,517 - MPMX19_06507 0.60 -1.5
291,517 - MPMX19_06507 0.60 -0.6
291,699 + MPMX19_06507 0.77 -1.3
291,699 + MPMX19_06507 0.77 -1.8
291,699 + MPMX19_06507 0.77 -1.6
291,700 - MPMX19_06507 0.77 -0.4
291,700 - MPMX19_06507 0.77 +0.9
291,700 - MPMX19_06507 0.77 -0.3
291,700 - MPMX19_06507 0.77 +0.5
291,700 - MPMX19_06507 0.77 -0.3
291,700 - MPMX19_06507 0.77 -1.1
291,700 - MPMX19_06507 0.77 -0.6
291,700 - MPMX19_06507 0.77 -0.8
291,700 - MPMX19_06507 0.77 -0.3
291,700 - MPMX19_06507 0.77 -0.4
291,700 - MPMX19_06507 0.77 -0.4
291,832 - MPMX19_06507 0.90 -0.9
291,832 - MPMX19_06507 0.90 -0.2
291,832 - MPMX19_06507 0.90 +1.1
291,832 - MPMX19_06507 0.90 -0.8

Or see this region's nucleotide sequence