Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05934 and MPMX19_05935 are separated by 222 nucleotides MPMX19_05935 and MPMX19_05936 are separated by 7 nucleotides
MPMX19_05934: MPMX19_05934 - Arylesterase, at 76,379 to 77,206
_05934
MPMX19_05935: MPMX19_05935 - sugar efflux transporter, at 77,429 to 78,574
_05935
MPMX19_05936: MPMX19_05936 - Alpha-galactosidase, at 78,582 to 79,880
_05936
Position (kb) 77
78
79 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.458 kb on + strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.459 kb on - strand at 76.875 kb on + strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 76.876 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.074 kb on - strand, within MPMX19_05934 at 77.166 kb on + strand at 77.166 kb on + strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.167 kb on - strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.285 kb on + strand at 77.286 kb on - strand at 77.286 kb on - strand at 77.286 kb on - strand at 77.357 kb on + strand at 77.378 kb on + strand at 77.379 kb on - strand at 77.388 kb on - strand at 77.564 kb on + strand, within MPMX19_05935 at 77.564 kb on + strand, within MPMX19_05935 at 77.564 kb on + strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.565 kb on - strand, within MPMX19_05935 at 77.576 kb on + strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.577 kb on - strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.696 kb on + strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.697 kb on - strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.789 kb on + strand, within MPMX19_05935 at 77.790 kb on - strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.014 kb on + strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.015 kb on - strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.191 kb on + strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.192 kb on - strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.275 kb on + strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.276 kb on - strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.347 kb on + strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.348 kb on - strand, within MPMX19_05935 at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.467 kb on + strand at 78.468 kb on - strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.473 kb on + strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.474 kb on - strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.475 kb on + strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.476 kb on - strand at 78.572 kb on + strand at 78.601 kb on + strand at 78.601 kb on + strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.602 kb on - strand at 78.633 kb on + strand at 78.633 kb on + strand at 79.087 kb on + strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.088 kb on - strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.213 kb on + strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936 at 79.214 kb on - strand, within MPMX19_05936
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 76,458 + +0.5 76,458 + +0.9 76,458 + -0.1 76,458 + +0.9 76,458 + -0.2 76,458 + +1.3 76,458 + -0.7 76,458 + -0.7 76,458 + +1.0 76,458 + -0.7 76,459 - +0.2 76,459 - +0.5 76,459 - +0.0 76,459 - -1.6 76,459 - +1.6 76,459 - +0.4 76,459 - -1.7 76,459 - -1.5 76,875 + MPMX19_05934 0.60 -1.7 76,876 - MPMX19_05934 0.60 -0.1 76,876 - MPMX19_05934 0.60 -1.2 76,876 - MPMX19_05934 0.60 +0.5 76,876 - MPMX19_05934 0.60 +0.3 76,876 - MPMX19_05934 0.60 +0.6 76,876 - MPMX19_05934 0.60 +0.1 76,876 - MPMX19_05934 0.60 -0.5 77,074 - MPMX19_05934 0.84 -0.7 77,074 - MPMX19_05934 0.84 -0.2 77,074 - MPMX19_05934 0.84 -0.5 77,074 - MPMX19_05934 0.84 +0.0 77,166 + +1.1 77,166 + -0.7 77,167 - -0.4 77,167 - -2.2 77,167 - -0.1 77,167 - -0.1 77,167 - +0.6 77,167 - -0.1 77,285 + -0.6 77,285 + -0.9 77,285 + -1.0 77,285 + +0.2 77,286 - -0.1 77,286 - -0.2 77,286 - -1.0 77,357 + -2.0 77,378 + -1.4 77,379 - +0.6 77,388 - -0.4 77,564 + MPMX19_05935 0.12 +0.2 77,564 + MPMX19_05935 0.12 +0.6 77,564 + MPMX19_05935 0.12 -0.7 77,565 - MPMX19_05935 0.12 +0.2 77,565 - MPMX19_05935 0.12 -1.8 77,565 - MPMX19_05935 0.12 +0.3 77,565 - MPMX19_05935 0.12 +0.6 77,576 + MPMX19_05935 0.13 -0.4 77,577 - MPMX19_05935 0.13 -1.7 77,577 - MPMX19_05935 0.13 -0.2 77,577 - MPMX19_05935 0.13 +0.3 77,577 - MPMX19_05935 0.13 +0.3 77,696 + MPMX19_05935 0.23 -0.0 77,696 + MPMX19_05935 0.23 -1.3 77,697 - MPMX19_05935 0.23 +0.8 77,697 - MPMX19_05935 0.23 -0.5 77,789 + MPMX19_05935 0.31 +0.2 77,789 + MPMX19_05935 0.31 +0.0 77,790 - MPMX19_05935 0.32 +1.2 78,014 + MPMX19_05935 0.51 -1.3 78,014 + MPMX19_05935 0.51 -0.2 78,014 + MPMX19_05935 0.51 -0.2 78,014 + MPMX19_05935 0.51 -0.8 78,014 + MPMX19_05935 0.51 -0.5 78,015 - MPMX19_05935 0.51 +0.0 78,015 - MPMX19_05935 0.51 +0.8 78,191 + MPMX19_05935 0.66 -0.1 78,191 + MPMX19_05935 0.66 -1.3 78,191 + MPMX19_05935 0.66 -0.5 78,191 + MPMX19_05935 0.66 -1.0 78,191 + MPMX19_05935 0.66 -0.8 78,191 + MPMX19_05935 0.66 -0.6 78,191 + MPMX19_05935 0.66 -1.4 78,191 + MPMX19_05935 0.66 +0.3 78,192 - MPMX19_05935 0.67 +0.3 78,192 - MPMX19_05935 0.67 -0.4 78,275 + MPMX19_05935 0.74 +0.3 78,275 + MPMX19_05935 0.74 -0.4 78,276 - MPMX19_05935 0.74 +1.6 78,276 - MPMX19_05935 0.74 +0.8 78,347 + MPMX19_05935 0.80 +1.1 78,347 + MPMX19_05935 0.80 +0.0 78,347 + MPMX19_05935 0.80 -0.1 78,347 + MPMX19_05935 0.80 +0.8 78,347 + MPMX19_05935 0.80 -0.5 78,347 + MPMX19_05935 0.80 -0.4 78,347 + MPMX19_05935 0.80 +0.0 78,347 + MPMX19_05935 0.80 -0.0 78,347 + MPMX19_05935 0.80 +0.7 78,347 + MPMX19_05935 0.80 +0.2 78,347 + MPMX19_05935 0.80 -0.2 78,347 + MPMX19_05935 0.80 -1.7 78,347 + MPMX19_05935 0.80 -0.6 78,347 + MPMX19_05935 0.80 +0.1 78,347 + MPMX19_05935 0.80 -0.3 78,347 + MPMX19_05935 0.80 -0.1 78,347 + MPMX19_05935 0.80 -0.4 78,348 - MPMX19_05935 0.80 -2.5 78,348 - MPMX19_05935 0.80 -1.0 78,348 - MPMX19_05935 0.80 +1.0 78,348 - MPMX19_05935 0.80 -0.2 78,348 - MPMX19_05935 0.80 +1.0 78,348 - MPMX19_05935 0.80 +0.3 78,348 - MPMX19_05935 0.80 +0.1 78,348 - MPMX19_05935 0.80 +0.3 78,348 - MPMX19_05935 0.80 +0.1 78,348 - MPMX19_05935 0.80 -3.8 78,348 - MPMX19_05935 0.80 -1.3 78,348 - MPMX19_05935 0.80 -1.0 78,348 - MPMX19_05935 0.80 +0.2 78,348 - MPMX19_05935 0.80 -0.6 78,348 - MPMX19_05935 0.80 +0.3 78,348 - MPMX19_05935 0.80 -0.2 78,348 - MPMX19_05935 0.80 +2.0 78,348 - MPMX19_05935 0.80 +0.6 78,348 - MPMX19_05935 0.80 -3.2 78,348 - MPMX19_05935 0.80 +0.3 78,348 - MPMX19_05935 0.80 -1.3 78,348 - MPMX19_05935 0.80 -1.4 78,348 - MPMX19_05935 0.80 -0.6 78,348 - MPMX19_05935 0.80 +0.5 78,467 + -1.0 78,467 + -0.7 78,467 + -0.4 78,467 + +0.1 78,468 - -0.7 78,473 + -0.4 78,473 + -0.7 78,473 + -0.7 78,473 + -1.3 78,473 + -1.4 78,473 + -0.3 78,473 + -1.5 78,473 + -1.7 78,473 + -0.2 78,473 + +0.5 78,473 + -0.8 78,473 + -0.9 78,473 + -0.6 78,473 + +0.4 78,473 + -0.4 78,473 + +0.4 78,473 + +0.5 78,473 + -0.1 78,474 - -0.2 78,474 - -0.2 78,474 - -0.4 78,474 - -1.1 78,474 - -0.5 78,474 - -0.4 78,474 - -0.8 78,474 - -0.3 78,474 - -0.0 78,474 - +0.5 78,474 - +0.2 78,474 - +0.1 78,474 - +0.5 78,474 - -0.3 78,475 + -0.7 78,475 + +0.3 78,475 + -0.7 78,475 + +0.5 78,475 + -0.6 78,475 + +0.6 78,475 + +0.3 78,475 + -0.1 78,475 + +0.5 78,475 + -2.1 78,475 + -0.2 78,475 + -1.2 78,475 + -0.1 78,475 + -2.0 78,475 + -1.5 78,476 - +0.4 78,476 - -1.3 78,476 - +0.0 78,476 - -0.1 78,476 - -2.1 78,476 - -1.8 78,476 - -0.6 78,476 - -0.8 78,476 - -0.5 78,476 - -0.5 78,476 - -0.1 78,476 - +0.3 78,476 - +0.2 78,476 - -1.0 78,476 - -0.2 78,476 - +0.3 78,476 - +1.0 78,476 - -0.5 78,476 - +0.6 78,476 - -0.3 78,476 - -1.4 78,476 - -0.4 78,476 - +0.6 78,476 - -2.1 78,476 - -0.7 78,476 - +0.1 78,476 - -0.4 78,476 - -0.7 78,572 + -0.4 78,601 + +0.1 78,601 + -1.7 78,602 - +0.5 78,602 - -1.2 78,602 - -0.6 78,602 - -0.3 78,602 - -0.8 78,602 - -0.3 78,633 + +0.8 78,633 + -0.9 79,087 + MPMX19_05936 0.39 +1.3 79,088 - MPMX19_05936 0.39 -1.8 79,088 - MPMX19_05936 0.39 -1.1 79,088 - MPMX19_05936 0.39 -0.7 79,088 - MPMX19_05936 0.39 -0.1 79,213 + MPMX19_05936 0.49 -0.2 79,213 + MPMX19_05936 0.49 +1.6 79,213 + MPMX19_05936 0.49 -0.7 79,213 + MPMX19_05936 0.49 -0.4 79,214 - MPMX19_05936 0.49 -1.0 79,214 - MPMX19_05936 0.49 +0.2 79,214 - MPMX19_05936 0.49 -2.1 79,214 - MPMX19_05936 0.49 -0.7
Or see this region's nucleotide sequence