Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05900

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05899 and MPMX19_05900 are separated by 25 nucleotidesMPMX19_05900 and MPMX19_05901 are separated by 210 nucleotides MPMX19_05899: MPMX19_05899 - hypothetical protein, at 33,969 to 35,366 _05899 MPMX19_05900: MPMX19_05900 - Flagellar hook protein FlgE, at 35,392 to 36,636 _05900 MPMX19_05901: MPMX19_05901 - Motility protein B, at 36,847 to 37,872 _05901 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 34.408 kb on + strand, within MPMX19_05899at 34.408 kb on + strand, within MPMX19_05899at 34.409 kb on - strand, within MPMX19_05899at 34.409 kb on - strand, within MPMX19_05899at 34.546 kb on + strand, within MPMX19_05899at 34.546 kb on + strand, within MPMX19_05899at 34.546 kb on + strand, within MPMX19_05899at 34.546 kb on + strand, within MPMX19_05899at 34.546 kb on + strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.547 kb on - strand, within MPMX19_05899at 34.723 kb on + strand, within MPMX19_05899at 34.723 kb on + strand, within MPMX19_05899at 34.723 kb on + strand, within MPMX19_05899at 34.723 kb on + strand, within MPMX19_05899at 34.723 kb on + strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 34.724 kb on - strand, within MPMX19_05899at 35.092 kb on + strand, within MPMX19_05899at 35.093 kb on - strand, within MPMX19_05899at 35.093 kb on - strand, within MPMX19_05899at 35.093 kb on - strand, within MPMX19_05899at 35.093 kb on - strand, within MPMX19_05899at 35.093 kb on - strand, within MPMX19_05899at 35.131 kb on + strand, within MPMX19_05899at 35.131 kb on + strand, within MPMX19_05899at 35.131 kb on + strand, within MPMX19_05899at 35.132 kb on - strand, within MPMX19_05899at 35.132 kb on - strand, within MPMX19_05899at 35.260 kb on + strandat 35.260 kb on + strandat 35.260 kb on + strandat 35.260 kb on + strandat 35.261 kb on - strandat 35.261 kb on - strandat 35.462 kb on + strandat 35.462 kb on + strandat 35.462 kb on + strandat 35.463 kb on - strandat 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.606 kb on + strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.607 kb on - strand, within MPMX19_05900at 35.669 kb on + strand, within MPMX19_05900at 35.669 kb on + strand, within MPMX19_05900at 35.669 kb on + strand, within MPMX19_05900at 35.669 kb on + strand, within MPMX19_05900at 35.670 kb on - strand, within MPMX19_05900at 35.670 kb on - strand, within MPMX19_05900at 35.670 kb on - strand, within MPMX19_05900at 35.670 kb on - strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.696 kb on + strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.697 kb on - strand, within MPMX19_05900at 35.783 kb on + strand, within MPMX19_05900at 35.783 kb on + strand, within MPMX19_05900at 35.783 kb on + strand, within MPMX19_05900at 35.783 kb on + strand, within MPMX19_05900at 35.784 kb on - strand, within MPMX19_05900at 35.784 kb on - strand, within MPMX19_05900at 35.784 kb on - strand, within MPMX19_05900at 35.784 kb on - strand, within MPMX19_05900at 35.784 kb on - strand, within MPMX19_05900at 35.918 kb on + strand, within MPMX19_05900at 35.918 kb on + strand, within MPMX19_05900at 35.918 kb on + strand, within MPMX19_05900at 35.919 kb on - strand, within MPMX19_05900at 35.919 kb on - strand, within MPMX19_05900at 35.919 kb on - strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.967 kb on + strand, within MPMX19_05900at 35.968 kb on - strand, within MPMX19_05900at 35.968 kb on - strand, within MPMX19_05900at 35.968 kb on - strand, within MPMX19_05900at 35.968 kb on - strand, within MPMX19_05900at 35.968 kb on - strand, within MPMX19_05900at 35.968 kb on - strand, within MPMX19_05900at 35.969 kb on + strand, within MPMX19_05900at 35.970 kb on - strand, within MPMX19_05900at 35.970 kb on - strand, within MPMX19_05900at 35.970 kb on - strand, within MPMX19_05900at 35.970 kb on - strand, within MPMX19_05900at 35.970 kb on - strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.065 kb on + strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.066 kb on - strand, within MPMX19_05900at 36.158 kb on + strand, within MPMX19_05900at 36.158 kb on + strand, within MPMX19_05900at 36.159 kb on - strand, within MPMX19_05900at 36.159 kb on - strand, within MPMX19_05900at 36.159 kb on - strand, within MPMX19_05900at 36.257 kb on + strand, within MPMX19_05900at 36.257 kb on + strand, within MPMX19_05900at 36.257 kb on + strand, within MPMX19_05900at 36.257 kb on + strand, within MPMX19_05900at 36.258 kb on - strand, within MPMX19_05900at 36.258 kb on - strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.273 kb on + strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.274 kb on - strand, within MPMX19_05900at 36.327 kb on - strand, within MPMX19_05900at 36.438 kb on - strand, within MPMX19_05900at 36.438 kb on - strand, within MPMX19_05900at 36.438 kb on - strand, within MPMX19_05900at 36.470 kb on + strand, within MPMX19_05900at 36.470 kb on + strand, within MPMX19_05900at 36.470 kb on + strand, within MPMX19_05900at 36.471 kb on - strand, within MPMX19_05900at 36.471 kb on - strand, within MPMX19_05900at 36.471 kb on - strand, within MPMX19_05900at 36.471 kb on - strand, within MPMX19_05900at 36.471 kb on - strand, within MPMX19_05900at 36.471 kb on - strand, within MPMX19_05900at 36.530 kb on + strandat 36.530 kb on + strandat 36.530 kb on + strandat 36.530 kb on + strandat 36.530 kb on + strandat 36.531 kb on - strandat 36.531 kb on - strandat 36.626 kb on + strandat 36.626 kb on + strandat 36.627 kb on - strandat 36.770 kb on - strandat 36.848 kb on + strandat 36.848 kb on + strandat 36.848 kb on + strandat 36.848 kb on + strandat 37.040 kb on + strand, within MPMX19_05901at 37.040 kb on + strand, within MPMX19_05901at 37.058 kb on + strand, within MPMX19_05901

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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34,408 + MPMX19_05899 0.31 +0.6
34,408 + MPMX19_05899 0.31 -0.6
34,409 - MPMX19_05899 0.31 +0.6
34,409 - MPMX19_05899 0.31 -1.5
34,546 + MPMX19_05899 0.41 -0.5
34,546 + MPMX19_05899 0.41 -0.1
34,546 + MPMX19_05899 0.41 +0.2
34,546 + MPMX19_05899 0.41 +0.1
34,546 + MPMX19_05899 0.41 +0.3
34,547 - MPMX19_05899 0.41 -0.6
34,547 - MPMX19_05899 0.41 +0.8
34,547 - MPMX19_05899 0.41 -0.3
34,547 - MPMX19_05899 0.41 +1.0
34,547 - MPMX19_05899 0.41 -1.3
34,547 - MPMX19_05899 0.41 -0.5
34,547 - MPMX19_05899 0.41 +0.6
34,547 - MPMX19_05899 0.41 -0.0
34,547 - MPMX19_05899 0.41 -1.0
34,723 + MPMX19_05899 0.54 -1.0
34,723 + MPMX19_05899 0.54 -3.0
34,723 + MPMX19_05899 0.54 +0.7
34,723 + MPMX19_05899 0.54 -0.7
34,723 + MPMX19_05899 0.54 -0.4
34,724 - MPMX19_05899 0.54 -0.3
34,724 - MPMX19_05899 0.54 -0.0
34,724 - MPMX19_05899 0.54 -0.4
34,724 - MPMX19_05899 0.54 -0.2
34,724 - MPMX19_05899 0.54 -0.1
34,724 - MPMX19_05899 0.54 -0.5
34,724 - MPMX19_05899 0.54 -0.7
34,724 - MPMX19_05899 0.54 +0.1
34,724 - MPMX19_05899 0.54 -0.4
35,092 + MPMX19_05899 0.80 -1.0
35,093 - MPMX19_05899 0.80 -0.4
35,093 - MPMX19_05899 0.80 +0.8
35,093 - MPMX19_05899 0.80 +0.0
35,093 - MPMX19_05899 0.80 +0.0
35,093 - MPMX19_05899 0.80 +1.3
35,131 + MPMX19_05899 0.83 -0.8
35,131 + MPMX19_05899 0.83 +0.7
35,131 + MPMX19_05899 0.83 -0.4
35,132 - MPMX19_05899 0.83 +1.2
35,132 - MPMX19_05899 0.83 -2.6
35,260 + -1.4
35,260 + +0.5
35,260 + -0.5
35,260 + -0.8
35,261 - -0.2
35,261 - +1.0
35,462 + -0.2
35,462 + -2.0
35,462 + -0.5
35,463 - -2.0
35,606 + MPMX19_05900 0.17 -0.6
35,606 + MPMX19_05900 0.17 +0.4
35,606 + MPMX19_05900 0.17 -0.5
35,606 + MPMX19_05900 0.17 -0.4
35,606 + MPMX19_05900 0.17 -1.2
35,606 + MPMX19_05900 0.17 -0.5
35,606 + MPMX19_05900 0.17 +1.9
35,606 + MPMX19_05900 0.17 -2.0
35,606 + MPMX19_05900 0.17 +0.4
35,606 + MPMX19_05900 0.17 +0.9
35,606 + MPMX19_05900 0.17 -0.2
35,606 + MPMX19_05900 0.17 +0.6
35,607 - MPMX19_05900 0.17 -0.7
35,607 - MPMX19_05900 0.17 -0.0
35,607 - MPMX19_05900 0.17 +0.7
35,607 - MPMX19_05900 0.17 -0.7
35,607 - MPMX19_05900 0.17 +1.6
35,607 - MPMX19_05900 0.17 -0.6
35,607 - MPMX19_05900 0.17 -1.7
35,607 - MPMX19_05900 0.17 +0.2
35,607 - MPMX19_05900 0.17 -1.0
35,607 - MPMX19_05900 0.17 +0.2
35,607 - MPMX19_05900 0.17 +0.2
35,669 + MPMX19_05900 0.22 +0.2
35,669 + MPMX19_05900 0.22 +1.6
35,669 + MPMX19_05900 0.22 -1.7
35,669 + MPMX19_05900 0.22 -2.1
35,670 - MPMX19_05900 0.22 +0.0
35,670 - MPMX19_05900 0.22 -1.1
35,670 - MPMX19_05900 0.22 +0.2
35,670 - MPMX19_05900 0.22 -0.2
35,696 + MPMX19_05900 0.24 -0.2
35,696 + MPMX19_05900 0.24 +0.7
35,696 + MPMX19_05900 0.24 -0.4
35,696 + MPMX19_05900 0.24 -0.8
35,696 + MPMX19_05900 0.24 +0.5
35,696 + MPMX19_05900 0.24 +0.1
35,696 + MPMX19_05900 0.24 -0.2
35,696 + MPMX19_05900 0.24 -1.0
35,696 + MPMX19_05900 0.24 +0.3
35,696 + MPMX19_05900 0.24 +0.0
35,697 - MPMX19_05900 0.24 +0.8
35,697 - MPMX19_05900 0.24 +0.6
35,697 - MPMX19_05900 0.24 +0.8
35,697 - MPMX19_05900 0.24 -0.4
35,697 - MPMX19_05900 0.24 -1.0
35,697 - MPMX19_05900 0.24 +0.2
35,697 - MPMX19_05900 0.24 -1.2
35,697 - MPMX19_05900 0.24 +0.0
35,783 + MPMX19_05900 0.31 -1.4
35,783 + MPMX19_05900 0.31 -1.2
35,783 + MPMX19_05900 0.31 +0.8
35,783 + MPMX19_05900 0.31 -0.2
35,784 - MPMX19_05900 0.31 -0.6
35,784 - MPMX19_05900 0.31 -0.7
35,784 - MPMX19_05900 0.31 +0.0
35,784 - MPMX19_05900 0.31 -0.6
35,784 - MPMX19_05900 0.31 +0.6
35,918 + MPMX19_05900 0.42 +0.7
35,918 + MPMX19_05900 0.42 +0.2
35,918 + MPMX19_05900 0.42 -0.5
35,919 - MPMX19_05900 0.42 -0.0
35,919 - MPMX19_05900 0.42 +0.3
35,919 - MPMX19_05900 0.42 +0.5
35,967 + MPMX19_05900 0.46 +0.5
35,967 + MPMX19_05900 0.46 +0.3
35,967 + MPMX19_05900 0.46 -0.2
35,967 + MPMX19_05900 0.46 +0.0
35,967 + MPMX19_05900 0.46 -1.6
35,967 + MPMX19_05900 0.46 -0.1
35,967 + MPMX19_05900 0.46 -1.2
35,967 + MPMX19_05900 0.46 -1.5
35,968 - MPMX19_05900 0.46 -1.0
35,968 - MPMX19_05900 0.46 +0.5
35,968 - MPMX19_05900 0.46 -0.2
35,968 - MPMX19_05900 0.46 +0.7
35,968 - MPMX19_05900 0.46 -1.4
35,968 - MPMX19_05900 0.46 -0.4
35,969 + MPMX19_05900 0.46 -0.5
35,970 - MPMX19_05900 0.46 +0.2
35,970 - MPMX19_05900 0.46 -1.2
35,970 - MPMX19_05900 0.46 -1.0
35,970 - MPMX19_05900 0.46 +0.3
35,970 - MPMX19_05900 0.46 -1.2
36,065 + MPMX19_05900 0.54 +0.1
36,065 + MPMX19_05900 0.54 -0.6
36,065 + MPMX19_05900 0.54 -1.0
36,065 + MPMX19_05900 0.54 -2.2
36,065 + MPMX19_05900 0.54 -0.7
36,065 + MPMX19_05900 0.54 -0.7
36,065 + MPMX19_05900 0.54 +1.2
36,065 + MPMX19_05900 0.54 -1.8
36,065 + MPMX19_05900 0.54 +0.2
36,065 + MPMX19_05900 0.54 -1.5
36,065 + MPMX19_05900 0.54 -0.5
36,065 + MPMX19_05900 0.54 -0.5
36,065 + MPMX19_05900 0.54 +0.4
36,065 + MPMX19_05900 0.54 -1.0
36,065 + MPMX19_05900 0.54 +0.3
36,066 - MPMX19_05900 0.54 -1.2
36,066 - MPMX19_05900 0.54 -0.0
36,066 - MPMX19_05900 0.54 +0.4
36,066 - MPMX19_05900 0.54 +0.3
36,066 - MPMX19_05900 0.54 +0.2
36,066 - MPMX19_05900 0.54 -0.1
36,066 - MPMX19_05900 0.54 -1.8
36,066 - MPMX19_05900 0.54 +0.2
36,066 - MPMX19_05900 0.54 +0.4
36,066 - MPMX19_05900 0.54 -1.2
36,066 - MPMX19_05900 0.54 +0.1
36,066 - MPMX19_05900 0.54 +0.4
36,066 - MPMX19_05900 0.54 +0.4
36,066 - MPMX19_05900 0.54 +0.9
36,158 + MPMX19_05900 0.62 +0.2
36,158 + MPMX19_05900 0.62 -0.2
36,159 - MPMX19_05900 0.62 +0.0
36,159 - MPMX19_05900 0.62 +0.6
36,159 - MPMX19_05900 0.62 -0.7
36,257 + MPMX19_05900 0.69 -1.4
36,257 + MPMX19_05900 0.69 -0.4
36,257 + MPMX19_05900 0.69 +1.6
36,257 + MPMX19_05900 0.69 -1.0
36,258 - MPMX19_05900 0.70 -2.1
36,258 - MPMX19_05900 0.70 -0.2
36,273 + MPMX19_05900 0.71 -1.0
36,273 + MPMX19_05900 0.71 -0.7
36,273 + MPMX19_05900 0.71 +0.6
36,273 + MPMX19_05900 0.71 -0.2
36,273 + MPMX19_05900 0.71 -1.4
36,273 + MPMX19_05900 0.71 +0.6
36,273 + MPMX19_05900 0.71 +0.8
36,273 + MPMX19_05900 0.71 +0.4
36,273 + MPMX19_05900 0.71 -0.1
36,274 - MPMX19_05900 0.71 -1.2
36,274 - MPMX19_05900 0.71 -0.8
36,274 - MPMX19_05900 0.71 -0.7
36,274 - MPMX19_05900 0.71 -1.5
36,274 - MPMX19_05900 0.71 -1.0
36,274 - MPMX19_05900 0.71 +0.0
36,274 - MPMX19_05900 0.71 -0.2
36,274 - MPMX19_05900 0.71 +0.6
36,274 - MPMX19_05900 0.71 +0.6
36,274 - MPMX19_05900 0.71 -0.8
36,274 - MPMX19_05900 0.71 -0.8
36,327 - MPMX19_05900 0.75 -1.1
36,438 - MPMX19_05900 0.84 +0.6
36,438 - MPMX19_05900 0.84 -0.4
36,438 - MPMX19_05900 0.84 -1.0
36,470 + MPMX19_05900 0.87 +0.6
36,470 + MPMX19_05900 0.87 +0.9
36,470 + MPMX19_05900 0.87 -1.0
36,471 - MPMX19_05900 0.87 -0.2
36,471 - MPMX19_05900 0.87 +0.6
36,471 - MPMX19_05900 0.87 -0.5
36,471 - MPMX19_05900 0.87 +0.0
36,471 - MPMX19_05900 0.87 +0.3
36,471 - MPMX19_05900 0.87 -0.2
36,530 + +0.6
36,530 + +1.6
36,530 + -1.7
36,530 + +0.9
36,530 + -0.9
36,531 - -0.6
36,531 - +1.2
36,626 + +1.0
36,626 + -0.8
36,627 - +0.1
36,770 - -0.2
36,848 + -2.2
36,848 + -0.4
36,848 + -0.6
36,848 + -1.0
37,040 + MPMX19_05901 0.19 -1.0
37,040 + MPMX19_05901 0.19 -0.4
37,058 + MPMX19_05901 0.21 -2.0

Or see this region's nucleotide sequence