Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05685 and MPMX19_05686 are separated by 63 nucleotides MPMX19_05686 and MPMX19_05687 are separated by 90 nucleotides MPMX19_05687 and MPMX19_05688 overlap by 4 nucleotides
MPMX19_05685: MPMX19_05685 - Protein-glutamate methylesterase/protein-glutamine glutaminase 2, at 401,128 to 402,294
_05685
MPMX19_05686: MPMX19_05686 - Chemotaxis protein CheY, at 402,358 to 402,723
_05686
MPMX19_05687: MPMX19_05687 - Chemotaxis protein CheW, at 402,814 to 403,314
_05687
MPMX19_05688: MPMX19_05688 - Sensor histidine kinase RcsC, at 403,311 to 406,088
_05688
Position (kb) 402
403
404 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.930 kb on + strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 401.931 kb on - strand, within MPMX19_05685 at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.294 kb on + strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.295 kb on - strand at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.422 kb on + strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.423 kb on - strand, within MPMX19_05686 at 402.888 kb on + strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.889 kb on - strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.890 kb on + strand, within MPMX19_05687 at 402.891 kb on - strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.001 kb on + strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.002 kb on - strand, within MPMX19_05687 at 403.375 kb on - strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.387 kb on + strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.388 kb on - strand at 403.616 kb on - strand, within MPMX19_05688 at 403.616 kb on - strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.741 kb on + strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.742 kb on - strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.993 kb on + strand, within MPMX19_05688 at 403.994 kb on - strand, within MPMX19_05688 at 403.994 kb on - strand, within MPMX19_05688
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 401,930 + MPMX19_05685 0.69 -0.3 401,930 + MPMX19_05685 0.69 +1.2 401,930 + MPMX19_05685 0.69 +0.4 401,931 - MPMX19_05685 0.69 -1.3 401,931 - MPMX19_05685 0.69 +0.1 401,931 - MPMX19_05685 0.69 +0.3 401,931 - MPMX19_05685 0.69 -0.2 401,931 - MPMX19_05685 0.69 +0.5 401,931 - MPMX19_05685 0.69 -1.6 402,294 + -0.2 402,294 + -0.5 402,294 + +0.2 402,294 + +0.3 402,294 + -0.1 402,294 + -0.4 402,295 - +0.4 402,295 - -0.3 402,295 - -1.6 402,422 + MPMX19_05686 0.17 +0.2 402,422 + MPMX19_05686 0.17 -1.5 402,422 + MPMX19_05686 0.17 +0.5 402,422 + MPMX19_05686 0.17 -0.5 402,422 + MPMX19_05686 0.17 +0.2 402,422 + MPMX19_05686 0.17 -2.9 402,423 - MPMX19_05686 0.18 -0.3 402,423 - MPMX19_05686 0.18 +0.1 402,423 - MPMX19_05686 0.18 -0.5 402,423 - MPMX19_05686 0.18 -0.3 402,423 - MPMX19_05686 0.18 -1.6 402,423 - MPMX19_05686 0.18 -1.5 402,888 + MPMX19_05687 0.15 +0.5 402,889 - MPMX19_05687 0.15 +0.5 402,889 - MPMX19_05687 0.15 -1.5 402,889 - MPMX19_05687 0.15 -0.8 402,890 + MPMX19_05687 0.15 +1.8 402,890 + MPMX19_05687 0.15 -0.8 402,890 + MPMX19_05687 0.15 -1.4 402,890 + MPMX19_05687 0.15 -0.3 402,891 - MPMX19_05687 0.15 -1.2 403,001 + MPMX19_05687 0.37 -0.6 403,001 + MPMX19_05687 0.37 -2.8 403,001 + MPMX19_05687 0.37 -1.4 403,001 + MPMX19_05687 0.37 -1.2 403,001 + MPMX19_05687 0.37 -1.0 403,001 + MPMX19_05687 0.37 -1.0 403,002 - MPMX19_05687 0.38 -1.1 403,002 - MPMX19_05687 0.38 -0.8 403,002 - MPMX19_05687 0.38 -1.4 403,002 - MPMX19_05687 0.38 -0.6 403,002 - MPMX19_05687 0.38 -2.8 403,002 - MPMX19_05687 0.38 -1.3 403,375 - -0.2 403,387 + -1.0 403,387 + +1.2 403,387 + +0.1 403,387 + +0.2 403,387 + -0.6 403,387 + +0.0 403,387 + +1.1 403,387 + -0.0 403,387 + +0.2 403,387 + -1.3 403,387 + -1.8 403,387 + -1.3 403,387 + +0.5 403,387 + -1.1 403,387 + -0.0 403,387 + -0.0 403,387 + -1.8 403,387 + -0.0 403,387 + -0.2 403,387 + -0.3 403,388 - -1.0 403,388 - -0.5 403,388 - -0.5 403,388 - -0.0 403,388 - +0.4 403,388 - -1.0 403,388 - -0.9 403,388 - +0.2 403,388 - +0.2 403,388 - -0.2 403,388 - -0.9 403,388 - -0.7 403,388 - -0.1 403,388 - +0.8 403,388 - +1.8 403,388 - -1.4 403,388 - +0.1 403,616 - MPMX19_05688 0.11 -0.5 403,616 - MPMX19_05688 0.11 +1.5 403,741 + MPMX19_05688 0.15 -1.5 403,741 + MPMX19_05688 0.15 -0.7 403,741 + MPMX19_05688 0.15 -1.6 403,741 + MPMX19_05688 0.15 -0.3 403,741 + MPMX19_05688 0.15 +0.4 403,741 + MPMX19_05688 0.15 -1.2 403,741 + MPMX19_05688 0.15 -0.2 403,741 + MPMX19_05688 0.15 -0.5 403,742 - MPMX19_05688 0.16 -0.9 403,742 - MPMX19_05688 0.16 -0.8 403,742 - MPMX19_05688 0.16 -1.0 403,742 - MPMX19_05688 0.16 -0.7 403,742 - MPMX19_05688 0.16 -0.6 403,742 - MPMX19_05688 0.16 -2.4 403,742 - MPMX19_05688 0.16 -1.3 403,742 - MPMX19_05688 0.16 -1.2 403,742 - MPMX19_05688 0.16 -0.8 403,742 - MPMX19_05688 0.16 +0.3 403,742 - MPMX19_05688 0.16 -1.8 403,742 - MPMX19_05688 0.16 -3.3 403,993 + MPMX19_05688 0.25 -0.9 403,993 + MPMX19_05688 0.25 -0.9 403,993 + MPMX19_05688 0.25 -0.6 403,993 + MPMX19_05688 0.25 +0.3 403,994 - MPMX19_05688 0.25 -2.5 403,994 - MPMX19_05688 0.25 -3.3
Or see this region's nucleotide sequence