Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05668

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05666 and MPMX19_05667 are separated by 19 nucleotidesMPMX19_05667 and MPMX19_05668 overlap by 4 nucleotidesMPMX19_05668 and MPMX19_05669 are separated by 128 nucleotidesMPMX19_05669 and MPMX19_05670 are separated by 170 nucleotides MPMX19_05666: MPMX19_05666 - Periplasmic nitrate reductase, at 383,754 to 386,666 _05666 MPMX19_05667: MPMX19_05667 - hypothetical protein, at 386,686 to 386,910 _05667 MPMX19_05668: MPMX19_05668 - Chaperone protein TorD, at 386,907 to 387,515 _05668 MPMX19_05669: MPMX19_05669 - hypothetical protein, at 387,644 to 387,850 _05669 MPMX19_05670: MPMX19_05670 - Quinolinate synthase A, at 388,021 to 389,031 _05670 Position (kb) 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.996 kb on + strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 385.997 kb on - strand, within MPMX19_05666at 386.017 kb on + strand, within MPMX19_05666at 386.018 kb on - strand, within MPMX19_05666at 386.117 kb on - strand, within MPMX19_05666at 386.122 kb on + strand, within MPMX19_05666at 386.123 kb on - strand, within MPMX19_05666at 386.123 kb on - strand, within MPMX19_05666at 386.275 kb on + strand, within MPMX19_05666at 386.275 kb on + strand, within MPMX19_05666at 386.275 kb on + strand, within MPMX19_05666at 386.275 kb on + strand, within MPMX19_05666at 386.276 kb on - strand, within MPMX19_05666at 386.276 kb on - strand, within MPMX19_05666at 386.687 kb on + strandat 386.687 kb on + strandat 386.687 kb on + strandat 386.687 kb on + strandat 386.687 kb on + strandat 386.687 kb on + strandat 386.687 kb on + strandat 386.688 kb on - strandat 386.688 kb on - strandat 386.688 kb on - strandat 386.688 kb on - strandat 386.688 kb on - strandat 386.705 kb on + strandat 386.705 kb on + strandat 386.705 kb on + strandat 386.705 kb on + strandat 386.706 kb on - strandat 386.706 kb on - strandat 386.706 kb on - strandat 386.706 kb on - strandat 387.001 kb on + strand, within MPMX19_05668at 387.002 kb on - strand, within MPMX19_05668at 387.002 kb on - strand, within MPMX19_05668at 387.250 kb on + strand, within MPMX19_05668at 387.250 kb on + strand, within MPMX19_05668at 387.251 kb on - strand, within MPMX19_05668at 387.251 kb on - strand, within MPMX19_05668at 387.251 kb on - strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.463 kb on + strandat 387.464 kb on - strandat 387.562 kb on - strandat 387.562 kb on - strandat 387.562 kb on - strandat 387.873 kb on + strandat 387.873 kb on + strandat 387.874 kb on - strandat 387.874 kb on - strandat 387.964 kb on - strandat 387.980 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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385,996 + MPMX19_05666 0.77 -0.0
385,996 + MPMX19_05666 0.77 -0.6
385,996 + MPMX19_05666 0.77 -1.0
385,996 + MPMX19_05666 0.77 -2.3
385,996 + MPMX19_05666 0.77 +0.3
385,996 + MPMX19_05666 0.77 -0.5
385,996 + MPMX19_05666 0.77 +1.9
385,996 + MPMX19_05666 0.77 -0.5
385,996 + MPMX19_05666 0.77 -0.0
385,996 + MPMX19_05666 0.77 -0.0
385,996 + MPMX19_05666 0.77 -0.0
385,996 + MPMX19_05666 0.77 -0.5
385,996 + MPMX19_05666 0.77 -0.1
385,996 + MPMX19_05666 0.77 -0.5
385,996 + MPMX19_05666 0.77 +0.7
385,996 + MPMX19_05666 0.77 -2.3
385,996 + MPMX19_05666 0.77 -0.8
385,996 + MPMX19_05666 0.77 -0.8
385,996 + MPMX19_05666 0.77 +0.0
385,996 + MPMX19_05666 0.77 -1.0
385,996 + MPMX19_05666 0.77 -1.1
385,997 - MPMX19_05666 0.77 -1.0
385,997 - MPMX19_05666 0.77 -0.2
385,997 - MPMX19_05666 0.77 +0.2
385,997 - MPMX19_05666 0.77 -2.2
385,997 - MPMX19_05666 0.77 +0.1
385,997 - MPMX19_05666 0.77 -0.3
385,997 - MPMX19_05666 0.77 +0.2
385,997 - MPMX19_05666 0.77 -0.3
385,997 - MPMX19_05666 0.77 +1.1
385,997 - MPMX19_05666 0.77 -0.3
385,997 - MPMX19_05666 0.77 -0.0
385,997 - MPMX19_05666 0.77 -1.9
385,997 - MPMX19_05666 0.77 +0.9
385,997 - MPMX19_05666 0.77 +0.9
386,017 + MPMX19_05666 0.78 -1.2
386,018 - MPMX19_05666 0.78 -0.8
386,117 - MPMX19_05666 0.81 -0.0
386,122 + MPMX19_05666 0.81 -2.4
386,123 - MPMX19_05666 0.81 -1.6
386,123 - MPMX19_05666 0.81 +0.1
386,275 + MPMX19_05666 0.87 -0.7
386,275 + MPMX19_05666 0.87 +0.1
386,275 + MPMX19_05666 0.87 +1.0
386,275 + MPMX19_05666 0.87 +0.5
386,276 - MPMX19_05666 0.87 +0.8
386,276 - MPMX19_05666 0.87 -0.8
386,687 + -0.0
386,687 + -2.0
386,687 + -1.1
386,687 + -0.9
386,687 + -1.3
386,687 + -0.5
386,687 + -0.5
386,688 - -0.4
386,688 - -0.4
386,688 - -1.5
386,688 - +0.5
386,688 - +0.7
386,705 + -0.5
386,705 + +1.5
386,705 + -1.0
386,705 + -0.7
386,706 - +0.3
386,706 - -0.8
386,706 - -0.2
386,706 - -0.0
387,001 + MPMX19_05668 0.15 -0.6
387,002 - MPMX19_05668 0.16 -1.6
387,002 - MPMX19_05668 0.16 +0.0
387,250 + MPMX19_05668 0.56 -0.8
387,250 + MPMX19_05668 0.56 -2.9
387,251 - MPMX19_05668 0.56 -0.0
387,251 - MPMX19_05668 0.56 -1.8
387,251 - MPMX19_05668 0.56 -1.3
387,253 + MPMX19_05668 0.57 +1.0
387,253 + MPMX19_05668 0.57 -0.8
387,253 + MPMX19_05668 0.57 -1.0
387,253 + MPMX19_05668 0.57 -0.7
387,253 + MPMX19_05668 0.57 -0.5
387,253 + MPMX19_05668 0.57 -1.1
387,253 + MPMX19_05668 0.57 -2.5
387,253 + MPMX19_05668 0.57 -0.8
387,253 + MPMX19_05668 0.57 -0.2
387,253 + MPMX19_05668 0.57 -0.2
387,253 + MPMX19_05668 0.57 -1.7
387,254 - MPMX19_05668 0.57 +0.4
387,254 - MPMX19_05668 0.57 -0.3
387,254 - MPMX19_05668 0.57 -0.3
387,254 - MPMX19_05668 0.57 -0.3
387,254 - MPMX19_05668 0.57 -1.2
387,254 - MPMX19_05668 0.57 -1.9
387,254 - MPMX19_05668 0.57 -0.0
387,254 - MPMX19_05668 0.57 -1.0
387,262 + MPMX19_05668 0.58 -0.8
387,262 + MPMX19_05668 0.58 -1.3
387,262 + MPMX19_05668 0.58 -1.5
387,262 + MPMX19_05668 0.58 -0.2
387,262 + MPMX19_05668 0.58 -0.5
387,262 + MPMX19_05668 0.58 +0.7
387,262 + MPMX19_05668 0.58 -0.8
387,262 + MPMX19_05668 0.58 -1.0
387,262 + MPMX19_05668 0.58 -1.0
387,262 + MPMX19_05668 0.58 -2.3
387,262 + MPMX19_05668 0.58 -0.8
387,262 + MPMX19_05668 0.58 -0.4
387,262 + MPMX19_05668 0.58 -0.9
387,262 + MPMX19_05668 0.58 +1.0
387,263 - MPMX19_05668 0.58 -1.3
387,263 - MPMX19_05668 0.58 +1.5
387,263 - MPMX19_05668 0.58 -1.5
387,263 - MPMX19_05668 0.58 -0.8
387,263 - MPMX19_05668 0.58 -0.3
387,263 - MPMX19_05668 0.58 -0.9
387,263 - MPMX19_05668 0.58 -0.9
387,263 - MPMX19_05668 0.58 +0.8
387,263 - MPMX19_05668 0.58 -0.2
387,263 - MPMX19_05668 0.58 +0.3
387,263 - MPMX19_05668 0.58 +0.4
387,263 - MPMX19_05668 0.58 -0.6
387,263 - MPMX19_05668 0.58 -1.5
387,263 - MPMX19_05668 0.58 -0.2
387,463 + -0.2
387,464 - -1.9
387,562 - -0.8
387,562 - +0.7
387,562 - -0.6
387,873 + -0.9
387,873 + +0.2
387,874 - -0.2
387,874 - +1.2
387,964 - +0.2
387,980 + -0.7
388,045 + +0.5
388,045 + -3.2
388,045 + -1.9
388,045 + -1.8
388,045 + -0.8
388,046 - -0.8
388,046 - +0.1
388,046 - +0.2
388,046 - -0.1
388,046 - +0.7
388,046 - -0.7
388,046 - +0.8
388,046 - -0.3
388,046 - -0.2
388,046 - +0.1
388,046 - -0.3
388,195 + MPMX19_05670 0.17 -2.2
388,195 + MPMX19_05670 0.17 +0.2
388,195 + MPMX19_05670 0.17 +1.8
388,195 + MPMX19_05670 0.17 -1.0
388,195 + MPMX19_05670 0.17 -1.0
388,195 + MPMX19_05670 0.17 -1.5
388,195 + MPMX19_05670 0.17 -0.0
388,196 - MPMX19_05670 0.17 -0.5
388,196 - MPMX19_05670 0.17 -0.7
388,196 - MPMX19_05670 0.17 -0.0
388,196 - MPMX19_05670 0.17 -1.5
388,196 - MPMX19_05670 0.17 -0.3
388,196 - MPMX19_05670 0.17 -2.2
388,456 + MPMX19_05670 0.43 -0.5
388,456 + MPMX19_05670 0.43 -0.0
388,456 + MPMX19_05670 0.43 -0.0
388,456 + MPMX19_05670 0.43 +1.2
388,456 + MPMX19_05670 0.43 +0.8
388,456 + MPMX19_05670 0.43 +0.4
388,456 + MPMX19_05670 0.43 +0.7
388,456 + MPMX19_05670 0.43 -1.2
388,457 - MPMX19_05670 0.43 -0.3
388,457 - MPMX19_05670 0.43 +0.2
388,457 - MPMX19_05670 0.43 -0.3
388,457 - MPMX19_05670 0.43 +1.1
388,457 - MPMX19_05670 0.43 -0.6
388,457 - MPMX19_05670 0.43 -0.2
388,457 - MPMX19_05670 0.43 -0.1
388,457 - MPMX19_05670 0.43 +1.5
388,457 - MPMX19_05670 0.43 -0.6
388,457 - MPMX19_05670 0.43 +0.3
388,457 - MPMX19_05670 0.43 +0.2
388,457 - MPMX19_05670 0.43 -1.0
388,457 - MPMX19_05670 0.43 -0.0
388,457 - MPMX19_05670 0.43 -1.2
388,457 - MPMX19_05670 0.43 -0.8

Or see this region's nucleotide sequence