Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05319 and MPMX19_05320 are separated by 191 nucleotides MPMX19_05320 and MPMX19_05321 are separated by 140 nucleotides
MPMX19_05319: MPMX19_05319 - Cystathionine gamma-synthase, at 858,293 to 859,438
_05319
MPMX19_05320: MPMX19_05320 - hypothetical protein, at 859,630 to 860,904
_05320
MPMX19_05321: MPMX19_05321 - Multicopper oxidase mco, at 861,045 to 862,529
_05321
Position (kb) 859
860
861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 858.670 kb on + strand, within MPMX19_05319 at 858.671 kb on - strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 859.001 kb on - strand, within MPMX19_05319 at 859.136 kb on + strand, within MPMX19_05319 at 859.137 kb on - strand, within MPMX19_05319 at 859.196 kb on + strand, within MPMX19_05319 at 859.403 kb on + strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.403 kb on + strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.404 kb on - strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.483 kb on + strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.484 kb on - strand at 859.535 kb on + strand at 859.580 kb on + strand at 859.581 kb on - strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.619 kb on - strand at 859.619 kb on - strand at 859.619 kb on - strand at 859.712 kb on - strand at 859.712 kb on - strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.732 kb on + strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.733 kb on - strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.757 kb on - strand at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.876 kb on + strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.877 kb on - strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.972 kb on + strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.973 kb on - strand, within MPMX19_05320 at 859.987 kb on + strand, within MPMX19_05320 at 859.987 kb on + strand, within MPMX19_05320 at 859.987 kb on + strand, within MPMX19_05320 at 859.988 kb on - strand, within MPMX19_05320 at 859.988 kb on - strand, within MPMX19_05320 at 860.011 kb on + strand, within MPMX19_05320 at 860.231 kb on - strand, within MPMX19_05320 at 860.281 kb on + strand, within MPMX19_05320 at 860.281 kb on + strand, within MPMX19_05320 at 860.282 kb on - strand, within MPMX19_05320 at 860.282 kb on - strand, within MPMX19_05320 at 860.282 kb on - strand, within MPMX19_05320 at 860.427 kb on - strand, within MPMX19_05320 at 860.427 kb on - strand, within MPMX19_05320 at 860.427 kb on - strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.431 kb on + strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.432 kb on - strand, within MPMX19_05320 at 860.530 kb on + strand, within MPMX19_05320 at 860.530 kb on + strand, within MPMX19_05320 at 860.530 kb on + strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.531 kb on - strand, within MPMX19_05320 at 860.533 kb on + strand, within MPMX19_05320 at 860.533 kb on + strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.534 kb on - strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.560 kb on + strand, within MPMX19_05320 at 860.561 kb on - strand, within MPMX19_05320 at 860.561 kb on - strand, within MPMX19_05320 at 860.561 kb on - strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.572 kb on + strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.573 kb on - strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.731 kb on + strand, within MPMX19_05320 at 860.732 kb on - strand, within MPMX19_05320 at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.902 kb on + strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 860.903 kb on - strand at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.291 kb on + strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.292 kb on - strand, within MPMX19_05321 at 861.432 kb on + strand, within MPMX19_05321 at 861.433 kb on - strand, within MPMX19_05321 at 861.474 kb on + strand, within MPMX19_05321 at 861.475 kb on - strand, within MPMX19_05321 at 861.475 kb on - strand, within MPMX19_05321 at 861.475 kb on - strand, within MPMX19_05321 at 861.777 kb on + strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321 at 861.778 kb on - strand, within MPMX19_05321
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 858,670 + MPMX19_05319 0.33 +0.5 858,671 - MPMX19_05319 0.33 -0.3 858,899 + MPMX19_05319 0.53 -0.5 858,899 + MPMX19_05319 0.53 -0.6 858,899 + MPMX19_05319 0.53 -0.1 858,899 + MPMX19_05319 0.53 -0.7 858,899 + MPMX19_05319 0.53 -2.0 858,899 + MPMX19_05319 0.53 -0.3 858,899 + MPMX19_05319 0.53 -1.8 858,899 + MPMX19_05319 0.53 -0.4 858,900 - MPMX19_05319 0.53 +1.2 858,900 - MPMX19_05319 0.53 +0.1 858,900 - MPMX19_05319 0.53 -0.4 858,900 - MPMX19_05319 0.53 -1.4 859,001 - MPMX19_05319 0.62 -0.2 859,136 + MPMX19_05319 0.74 -0.8 859,137 - MPMX19_05319 0.74 -1.0 859,196 + MPMX19_05319 0.79 -1.3 859,403 + +0.0 859,403 + -0.6 859,403 + -0.3 859,403 + -1.1 859,404 - +1.2 859,404 - +1.5 859,404 - -0.3 859,404 - -0.1 859,404 - -0.5 859,404 - -0.0 859,483 + -0.1 859,483 + -0.3 859,483 + -0.5 859,483 + -0.5 859,483 + -2.3 859,483 + -0.1 859,484 - -0.5 859,484 - +0.3 859,484 - +0.2 859,484 - -1.1 859,484 - +1.1 859,484 - -1.3 859,484 - +0.2 859,484 - +0.4 859,535 + -0.9 859,580 + +0.5 859,581 - -1.0 859,618 + -0.4 859,618 + -0.7 859,618 + +0.5 859,618 + +0.1 859,618 + -1.3 859,618 + -0.3 859,618 + -1.8 859,619 - +0.2 859,619 - -0.7 859,619 - -0.0 859,712 - -1.7 859,712 - +0.5 859,732 + -0.5 859,732 + -0.3 859,732 + +0.5 859,732 + -1.7 859,732 + +3.1 859,732 + -0.2 859,732 + -0.8 859,732 + -0.1 859,732 + -0.7 859,732 + -0.8 859,732 + +0.2 859,733 - -0.0 859,733 - -2.1 859,733 - +0.0 859,733 - -0.8 859,733 - -2.4 859,733 - +0.7 859,733 - -1.5 859,733 - +0.4 859,733 - +1.5 859,733 - +0.8 859,733 - +0.2 859,757 - -0.4 859,757 - -1.1 859,757 - +0.6 859,757 - -1.4 859,876 + MPMX19_05320 0.19 -0.8 859,876 + MPMX19_05320 0.19 -0.8 859,876 + MPMX19_05320 0.19 +0.8 859,876 + MPMX19_05320 0.19 +0.5 859,876 + MPMX19_05320 0.19 -0.8 859,876 + MPMX19_05320 0.19 -0.8 859,876 + MPMX19_05320 0.19 +1.1 859,876 + MPMX19_05320 0.19 -0.3 859,876 + MPMX19_05320 0.19 +0.8 859,877 - MPMX19_05320 0.19 -1.7 859,877 - MPMX19_05320 0.19 -0.5 859,877 - MPMX19_05320 0.19 -0.1 859,877 - MPMX19_05320 0.19 +0.9 859,877 - MPMX19_05320 0.19 -0.5 859,972 + MPMX19_05320 0.27 +0.5 859,972 + MPMX19_05320 0.27 -1.3 859,972 + MPMX19_05320 0.27 -0.1 859,972 + MPMX19_05320 0.27 -0.0 859,972 + MPMX19_05320 0.27 +1.2 859,972 + MPMX19_05320 0.27 -1.2 859,972 + MPMX19_05320 0.27 -1.7 859,973 - MPMX19_05320 0.27 +0.3 859,973 - MPMX19_05320 0.27 -0.8 859,973 - MPMX19_05320 0.27 -0.2 859,973 - MPMX19_05320 0.27 -0.3 859,973 - MPMX19_05320 0.27 -0.4 859,973 - MPMX19_05320 0.27 +0.9 859,987 + MPMX19_05320 0.28 +0.5 859,987 + MPMX19_05320 0.28 +0.1 859,987 + MPMX19_05320 0.28 +0.1 859,988 - MPMX19_05320 0.28 +0.2 859,988 - MPMX19_05320 0.28 +1.2 860,011 + MPMX19_05320 0.30 -2.5 860,231 - MPMX19_05320 0.47 -0.0 860,281 + MPMX19_05320 0.51 +0.3 860,281 + MPMX19_05320 0.51 -1.8 860,282 - MPMX19_05320 0.51 -1.5 860,282 - MPMX19_05320 0.51 +0.2 860,282 - MPMX19_05320 0.51 -1.3 860,427 - MPMX19_05320 0.63 -0.5 860,427 - MPMX19_05320 0.63 +0.8 860,427 - MPMX19_05320 0.63 +0.2 860,431 + MPMX19_05320 0.63 -1.3 860,431 + MPMX19_05320 0.63 +0.5 860,431 + MPMX19_05320 0.63 -0.3 860,431 + MPMX19_05320 0.63 -0.4 860,431 + MPMX19_05320 0.63 -0.5 860,431 + MPMX19_05320 0.63 +0.3 860,431 + MPMX19_05320 0.63 +0.6 860,431 + MPMX19_05320 0.63 -0.5 860,432 - MPMX19_05320 0.63 -0.3 860,432 - MPMX19_05320 0.63 -0.3 860,432 - MPMX19_05320 0.63 +1.2 860,432 - MPMX19_05320 0.63 +2.5 860,432 - MPMX19_05320 0.63 -0.4 860,432 - MPMX19_05320 0.63 -1.1 860,432 - MPMX19_05320 0.63 +0.8 860,432 - MPMX19_05320 0.63 +0.2 860,530 + MPMX19_05320 0.71 +1.0 860,530 + MPMX19_05320 0.71 -1.0 860,530 + MPMX19_05320 0.71 +1.1 860,531 - MPMX19_05320 0.71 +0.9 860,531 - MPMX19_05320 0.71 -2.1 860,531 - MPMX19_05320 0.71 -0.2 860,531 - MPMX19_05320 0.71 +2.5 860,531 - MPMX19_05320 0.71 -0.3 860,531 - MPMX19_05320 0.71 +1.1 860,531 - MPMX19_05320 0.71 +0.2 860,533 + MPMX19_05320 0.71 -0.4 860,533 + MPMX19_05320 0.71 +0.3 860,534 - MPMX19_05320 0.71 -0.2 860,534 - MPMX19_05320 0.71 -1.3 860,534 - MPMX19_05320 0.71 +0.2 860,534 - MPMX19_05320 0.71 -0.6 860,560 + MPMX19_05320 0.73 -0.0 860,560 + MPMX19_05320 0.73 -0.1 860,560 + MPMX19_05320 0.73 +0.7 860,560 + MPMX19_05320 0.73 -0.8 860,561 - MPMX19_05320 0.73 -1.5 860,561 - MPMX19_05320 0.73 +1.2 860,561 - MPMX19_05320 0.73 +0.8 860,572 + MPMX19_05320 0.74 -1.2 860,572 + MPMX19_05320 0.74 -1.0 860,572 + MPMX19_05320 0.74 -0.8 860,572 + MPMX19_05320 0.74 -0.7 860,572 + MPMX19_05320 0.74 +1.2 860,573 - MPMX19_05320 0.74 +0.7 860,573 - MPMX19_05320 0.74 -1.0 860,573 - MPMX19_05320 0.74 -0.1 860,573 - MPMX19_05320 0.74 -0.1 860,573 - MPMX19_05320 0.74 -0.6 860,731 + MPMX19_05320 0.86 -0.8 860,731 + MPMX19_05320 0.86 -0.1 860,731 + MPMX19_05320 0.86 -0.8 860,731 + MPMX19_05320 0.86 +0.8 860,731 + MPMX19_05320 0.86 +0.2 860,732 - MPMX19_05320 0.86 -0.9 860,902 + +0.3 860,902 + +0.2 860,902 + -0.1 860,902 + -0.2 860,902 + -1.3 860,902 + +1.5 860,902 + +1.0 860,902 + -1.5 860,902 + -0.3 860,902 + -0.8 860,902 + -1.6 860,902 + +0.7 860,902 + +1.2 860,902 + +1.0 860,902 + -1.1 860,902 + -2.7 860,902 + -0.5 860,902 + -1.5 860,903 - -0.5 860,903 - -2.8 860,903 - -0.6 860,903 - +0.2 860,903 - +2.2 860,903 - +0.2 860,903 - +1.5 860,903 - +0.5 860,903 - +0.9 860,903 - -2.3 860,903 - -0.5 860,903 - +0.7 860,903 - -0.3 860,903 - +0.7 860,903 - -1.1 860,903 - -1.8 861,291 + MPMX19_05321 0.17 +0.4 861,291 + MPMX19_05321 0.17 -0.3 861,291 + MPMX19_05321 0.17 +1.2 861,291 + MPMX19_05321 0.17 +1.1 861,291 + MPMX19_05321 0.17 +0.5 861,291 + MPMX19_05321 0.17 +0.5 861,291 + MPMX19_05321 0.17 -0.3 861,292 - MPMX19_05321 0.17 +0.6 861,292 - MPMX19_05321 0.17 +0.2 861,292 - MPMX19_05321 0.17 +0.6 861,292 - MPMX19_05321 0.17 +0.0 861,292 - MPMX19_05321 0.17 +0.7 861,292 - MPMX19_05321 0.17 -1.4 861,292 - MPMX19_05321 0.17 -1.5 861,292 - MPMX19_05321 0.17 -1.1 861,292 - MPMX19_05321 0.17 +0.4 861,292 - MPMX19_05321 0.17 -0.4 861,432 + MPMX19_05321 0.26 -2.0 861,433 - MPMX19_05321 0.26 -1.0 861,474 + MPMX19_05321 0.29 -0.0 861,475 - MPMX19_05321 0.29 -1.2 861,475 - MPMX19_05321 0.29 +0.0 861,475 - MPMX19_05321 0.29 +0.0 861,777 + MPMX19_05321 0.49 -0.8 861,778 - MPMX19_05321 0.49 -0.0 861,778 - MPMX19_05321 0.49 -0.6 861,778 - MPMX19_05321 0.49 -0.7 861,778 - MPMX19_05321 0.49 +0.9 861,778 - MPMX19_05321 0.49 -0.7
Or see this region's nucleotide sequence