Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04555 and MPMX19_04556 are separated by 63 nucleotides MPMX19_04556 and MPMX19_04557 are separated by 546 nucleotides MPMX19_04557 and MPMX19_04558 are separated by 184 nucleotides
MPMX19_04555: MPMX19_04555 - Sensor histidine kinase RcsC, at 931,782 to 935,606
_04555
MPMX19_04556: MPMX19_04556 - hypothetical protein, at 935,670 to 935,873
_04556
MPMX19_04557: MPMX19_04557 - Na(+)/H(+) antiporter NhaA, at 936,420 to 937,625
_04557
MPMX19_04558: MPMX19_04558 - hypothetical protein, at 937,810 to 940,437
_04558
Position (kb) 936
937
938 Strain fitness (log2 ratio) -2
-1
0
1
2 at 935.437 kb on + strand at 935.437 kb on + strand at 935.438 kb on - strand at 935.642 kb on + strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.643 kb on - strand at 935.791 kb on + strand, within MPMX19_04556 at 935.889 kb on + strand at 935.889 kb on + strand at 935.890 kb on - strand at 935.924 kb on - strand at 935.982 kb on + strand at 935.983 kb on - strand at 936.026 kb on + strand at 936.034 kb on + strand at 936.035 kb on - strand at 936.035 kb on - strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.331 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on + strand at 936.333 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.334 kb on - strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.335 kb on + strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.336 kb on - strand at 936.386 kb on - strand at 936.419 kb on + strand at 936.420 kb on - strand at 936.564 kb on + strand, within MPMX19_04557 at 936.564 kb on + strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.565 kb on - strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557 at 936.585 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.762 kb on + strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.763 kb on - strand, within MPMX19_04557 at 936.951 kb on + strand, within MPMX19_04557 at 936.951 kb on + strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 936.952 kb on - strand, within MPMX19_04557 at 937.050 kb on + strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.051 kb on - strand, within MPMX19_04557 at 937.585 kb on - strand at 937.623 kb on + strand at 937.624 kb on - strand at 937.877 kb on + strand at 937.877 kb on + strand at 937.877 kb on + strand at 937.877 kb on + strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.878 kb on - strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.889 kb on + strand at 937.890 kb on - strand at 937.890 kb on - strand at 937.890 kb on - strand at 937.890 kb on - strand at 937.890 kb on - strand at 938.058 kb on + strand at 938.096 kb on + strand, within MPMX19_04558 at 938.096 kb on + strand, within MPMX19_04558 at 938.096 kb on + strand, within MPMX19_04558 at 938.096 kb on + strand, within MPMX19_04558 at 938.097 kb on - strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.261 kb on + strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.262 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558 at 938.520 kb on - strand, within MPMX19_04558
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 935,437 + -0.4 935,437 + -2.3 935,438 - -1.6 935,642 + -1.4 935,643 - -0.5 935,643 - -0.7 935,643 - -0.4 935,643 - -2.2 935,791 + MPMX19_04556 0.59 -0.4 935,889 + -0.7 935,889 + +0.4 935,890 - +0.1 935,924 - -0.2 935,982 + -0.4 935,983 - -1.8 936,026 + -0.7 936,034 + -1.2 936,035 - -1.2 936,035 - +0.8 936,331 + +0.0 936,331 + -0.8 936,331 + -0.7 936,333 + +0.6 936,333 + -1.2 936,333 + +0.8 936,333 + -0.5 936,333 + -0.4 936,333 + -1.0 936,333 + +1.0 936,333 - +1.6 936,334 - -2.6 936,334 - -1.0 936,334 - -0.5 936,335 + -0.6 936,335 + -1.1 936,335 + -1.4 936,335 + -0.4 936,335 + +1.6 936,335 + -1.4 936,336 - -1.0 936,336 - +0.4 936,336 - -0.2 936,336 - -0.2 936,336 - +1.3 936,386 - +0.2 936,419 + +0.4 936,420 - -1.7 936,564 + MPMX19_04557 0.12 +0.6 936,564 + MPMX19_04557 0.12 -0.5 936,565 - MPMX19_04557 0.12 +1.0 936,565 - MPMX19_04557 0.12 -1.2 936,585 + MPMX19_04557 0.14 +0.3 936,585 + MPMX19_04557 0.14 -2.7 936,762 + MPMX19_04557 0.28 -0.0 936,762 + MPMX19_04557 0.28 -0.6 936,762 + MPMX19_04557 0.28 -0.4 936,762 + MPMX19_04557 0.28 +0.9 936,762 + MPMX19_04557 0.28 -0.4 936,762 + MPMX19_04557 0.28 +1.6 936,762 + MPMX19_04557 0.28 +0.6 936,762 + MPMX19_04557 0.28 -1.5 936,762 + MPMX19_04557 0.28 -0.2 936,762 + MPMX19_04557 0.28 +0.6 936,762 + MPMX19_04557 0.28 +0.6 936,763 - MPMX19_04557 0.28 +1.1 936,763 - MPMX19_04557 0.28 -0.7 936,763 - MPMX19_04557 0.28 +0.5 936,763 - MPMX19_04557 0.28 +0.0 936,763 - MPMX19_04557 0.28 +0.4 936,763 - MPMX19_04557 0.28 -0.4 936,763 - MPMX19_04557 0.28 +1.6 936,951 + MPMX19_04557 0.44 -0.7 936,951 + MPMX19_04557 0.44 +1.2 936,952 - MPMX19_04557 0.44 -0.4 936,952 - MPMX19_04557 0.44 -2.0 936,952 - MPMX19_04557 0.44 +0.9 936,952 - MPMX19_04557 0.44 -0.4 937,050 + MPMX19_04557 0.52 +0.2 937,051 - MPMX19_04557 0.52 -1.2 937,051 - MPMX19_04557 0.52 +0.6 937,051 - MPMX19_04557 0.52 +0.6 937,051 - MPMX19_04557 0.52 -0.7 937,585 - +0.6 937,623 + -0.6 937,624 - -0.4 937,877 + -2.0 937,877 + +0.0 937,877 + -0.7 937,877 + -0.4 937,878 - -1.1 937,878 - -0.6 937,878 - -1.2 937,878 - +2.3 937,878 - +0.3 937,878 - -0.5 937,878 - +0.8 937,889 + -0.3 937,889 + +0.8 937,889 + +1.0 937,889 + -0.5 937,889 + -1.0 937,889 + +0.0 937,889 + +0.2 937,889 + +0.5 937,890 - -0.4 937,890 - -1.2 937,890 - -0.6 937,890 - +0.3 937,890 - +0.6 938,058 + -2.5 938,096 + MPMX19_04558 0.11 +0.6 938,096 + MPMX19_04558 0.11 -2.1 938,096 + MPMX19_04558 0.11 -1.4 938,096 + MPMX19_04558 0.11 -0.9 938,097 - MPMX19_04558 0.11 +0.6 938,261 + MPMX19_04558 0.17 -0.1 938,261 + MPMX19_04558 0.17 +0.1 938,261 + MPMX19_04558 0.17 +1.3 938,261 + MPMX19_04558 0.17 -0.2 938,261 + MPMX19_04558 0.17 -0.8 938,262 - MPMX19_04558 0.17 +0.5 938,262 - MPMX19_04558 0.17 -0.6 938,262 - MPMX19_04558 0.17 +1.3 938,262 - MPMX19_04558 0.17 -0.2 938,262 - MPMX19_04558 0.17 -2.5 938,262 - MPMX19_04558 0.17 -1.7 938,262 - MPMX19_04558 0.17 +0.0 938,520 - MPMX19_04558 0.27 +0.6 938,520 - MPMX19_04558 0.27 -1.2 938,520 - MPMX19_04558 0.27 -1.0 938,520 - MPMX19_04558 0.27 +0.4 938,520 - MPMX19_04558 0.27 +0.6 938,520 - MPMX19_04558 0.27 +1.1 938,520 - MPMX19_04558 0.27 -0.2
Or see this region's nucleotide sequence