Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04495

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04494 and MPMX19_04495 are separated by 1 nucleotidesMPMX19_04495 and MPMX19_04496 overlap by 4 nucleotides MPMX19_04494: MPMX19_04494 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 862,026 to 862,979 _04494 MPMX19_04495: MPMX19_04495 - hypothetical protein, at 862,981 to 864,207 _04495 MPMX19_04496: MPMX19_04496 - hypothetical protein, at 864,204 to 865,361 _04496 Position (kb) 862 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.298 kb on + strand, within MPMX19_04494at 862.299 kb on - strand, within MPMX19_04494at 862.299 kb on - strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.368 kb on + strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.369 kb on - strand, within MPMX19_04494at 862.380 kb on + strand, within MPMX19_04494at 862.380 kb on + strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.381 kb on - strand, within MPMX19_04494at 862.846 kb on - strand, within MPMX19_04494at 863.365 kb on + strand, within MPMX19_04495at 863.365 kb on + strand, within MPMX19_04495at 863.365 kb on + strand, within MPMX19_04495at 863.366 kb on - strand, within MPMX19_04495at 863.366 kb on - strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.551 kb on + strand, within MPMX19_04495at 863.620 kb on + strand, within MPMX19_04495at 863.719 kb on + strand, within MPMX19_04495at 863.719 kb on + strand, within MPMX19_04495at 863.720 kb on - strand, within MPMX19_04495at 863.720 kb on - strand, within MPMX19_04495at 863.986 kb on + strand, within MPMX19_04495at 863.986 kb on + strand, within MPMX19_04495at 863.986 kb on + strand, within MPMX19_04495at 863.986 kb on + strand, within MPMX19_04495at 863.987 kb on - strand, within MPMX19_04495at 864.014 kb on - strand, within MPMX19_04495at 864.014 kb on - strand, within MPMX19_04495at 864.014 kb on - strand, within MPMX19_04495at 864.297 kb on + strandat 864.297 kb on + strandat 864.297 kb on + strandat 864.297 kb on + strandat 864.297 kb on + strandat 864.297 kb on + strandat 864.297 kb on + strandat 864.298 kb on - strandat 864.298 kb on - strandat 864.298 kb on - strandat 864.298 kb on - strandat 864.298 kb on - strandat 864.298 kb on - strandat 864.298 kb on - strandat 864.309 kb on + strandat 864.309 kb on + strandat 864.309 kb on + strandat 864.310 kb on - strandat 864.310 kb on - strandat 864.321 kb on + strand, within MPMX19_04496at 864.321 kb on + strand, within MPMX19_04496at 864.322 kb on - strand, within MPMX19_04496at 864.322 kb on - strand, within MPMX19_04496at 864.322 kb on - strand, within MPMX19_04496at 864.322 kb on - strand, within MPMX19_04496at 864.474 kb on + strand, within MPMX19_04496at 864.474 kb on + strand, within MPMX19_04496at 864.474 kb on + strand, within MPMX19_04496at 864.474 kb on + strand, within MPMX19_04496at 864.474 kb on + strand, within MPMX19_04496at 864.474 kb on + strand, within MPMX19_04496at 864.474 kb on + strand, within MPMX19_04496at 864.475 kb on - strand, within MPMX19_04496at 864.475 kb on - strand, within MPMX19_04496at 864.561 kb on + strand, within MPMX19_04496at 864.576 kb on + strand, within MPMX19_04496at 864.576 kb on + strand, within MPMX19_04496at 864.577 kb on - strand, within MPMX19_04496at 864.577 kb on - strand, within MPMX19_04496at 864.577 kb on - strand, within MPMX19_04496at 864.577 kb on - strand, within MPMX19_04496at 864.577 kb on - strand, within MPMX19_04496at 864.577 kb on - strand, within MPMX19_04496at 864.588 kb on + strand, within MPMX19_04496at 864.588 kb on + strand, within MPMX19_04496at 864.588 kb on + strand, within MPMX19_04496at 864.588 kb on + strand, within MPMX19_04496at 864.589 kb on - strand, within MPMX19_04496at 864.589 kb on - strand, within MPMX19_04496at 864.589 kb on - strand, within MPMX19_04496at 864.589 kb on - strand, within MPMX19_04496at 864.589 kb on - strand, within MPMX19_04496at 864.589 kb on - strand, within MPMX19_04496at 864.589 kb on - strand, within MPMX19_04496at 864.750 kb on + strand, within MPMX19_04496at 864.750 kb on + strand, within MPMX19_04496at 864.750 kb on + strand, within MPMX19_04496at 864.751 kb on - strand, within MPMX19_04496at 864.751 kb on - strand, within MPMX19_04496at 864.751 kb on - strand, within MPMX19_04496at 864.751 kb on - strand, within MPMX19_04496at 864.751 kb on - strand, within MPMX19_04496at 864.759 kb on + strand, within MPMX19_04496at 864.759 kb on + strand, within MPMX19_04496at 864.759 kb on + strand, within MPMX19_04496at 864.759 kb on + strand, within MPMX19_04496at 864.759 kb on + strand, within MPMX19_04496at 864.759 kb on + strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.760 kb on - strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.885 kb on + strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.886 kb on - strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.894 kb on + strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.895 kb on - strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.927 kb on + strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.928 kb on - strand, within MPMX19_04496at 864.945 kb on + strand, within MPMX19_04496at 864.945 kb on + strand, within MPMX19_04496at 864.946 kb on - strand, within MPMX19_04496at 864.946 kb on - strand, within MPMX19_04496at 864.946 kb on - strand, within MPMX19_04496at 864.951 kb on + strand, within MPMX19_04496at 864.951 kb on + strand, within MPMX19_04496at 864.951 kb on + strand, within MPMX19_04496at 864.952 kb on - strand, within MPMX19_04496at 864.952 kb on - strand, within MPMX19_04496at 864.952 kb on - strand, within MPMX19_04496

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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862,298 + MPMX19_04494 0.29 +1.0
862,298 + MPMX19_04494 0.29 -1.3
862,298 + MPMX19_04494 0.29 -1.2
862,298 + MPMX19_04494 0.29 +0.4
862,298 + MPMX19_04494 0.29 -0.6
862,298 + MPMX19_04494 0.29 +0.5
862,298 + MPMX19_04494 0.29 -0.2
862,298 + MPMX19_04494 0.29 +1.3
862,298 + MPMX19_04494 0.29 -1.1
862,299 - MPMX19_04494 0.29 -0.2
862,299 - MPMX19_04494 0.29 +0.8
862,368 + MPMX19_04494 0.36 -0.7
862,368 + MPMX19_04494 0.36 -0.1
862,368 + MPMX19_04494 0.36 +0.4
862,369 - MPMX19_04494 0.36 +1.1
862,369 - MPMX19_04494 0.36 -1.0
862,369 - MPMX19_04494 0.36 +0.6
862,369 - MPMX19_04494 0.36 -1.0
862,380 + MPMX19_04494 0.37 -0.2
862,380 + MPMX19_04494 0.37 -1.2
862,381 - MPMX19_04494 0.37 -1.1
862,381 - MPMX19_04494 0.37 +0.6
862,381 - MPMX19_04494 0.37 +0.8
862,381 - MPMX19_04494 0.37 -0.1
862,381 - MPMX19_04494 0.37 +0.0
862,381 - MPMX19_04494 0.37 +0.6
862,846 - MPMX19_04494 0.86 -2.2
863,365 + MPMX19_04495 0.31 +0.5
863,365 + MPMX19_04495 0.31 -0.7
863,365 + MPMX19_04495 0.31 -1.0
863,366 - MPMX19_04495 0.31 +0.6
863,366 - MPMX19_04495 0.31 +1.3
863,551 + MPMX19_04495 0.46 -1.2
863,551 + MPMX19_04495 0.46 -0.7
863,551 + MPMX19_04495 0.46 -0.8
863,551 + MPMX19_04495 0.46 -0.6
863,620 + MPMX19_04495 0.52 +0.3
863,719 + MPMX19_04495 0.60 -1.8
863,719 + MPMX19_04495 0.60 -0.4
863,720 - MPMX19_04495 0.60 -1.0
863,720 - MPMX19_04495 0.60 +0.2
863,986 + MPMX19_04495 0.82 -1.2
863,986 + MPMX19_04495 0.82 -0.7
863,986 + MPMX19_04495 0.82 -1.2
863,986 + MPMX19_04495 0.82 -2.8
863,987 - MPMX19_04495 0.82 -1.2
864,014 - MPMX19_04495 0.84 +0.2
864,014 - MPMX19_04495 0.84 +0.7
864,014 - MPMX19_04495 0.84 +0.6
864,297 + -0.8
864,297 + -0.6
864,297 + -0.0
864,297 + +0.6
864,297 + -2.6
864,297 + +1.9
864,297 + +1.1
864,298 - +0.0
864,298 - -0.2
864,298 - +0.0
864,298 - +0.6
864,298 - -0.1
864,298 - -1.0
864,298 - -0.7
864,309 + +0.3
864,309 + -1.4
864,309 + +0.3
864,310 - -0.4
864,310 - -0.3
864,321 + MPMX19_04496 0.10 -2.0
864,321 + MPMX19_04496 0.10 -1.5
864,322 - MPMX19_04496 0.10 -1.5
864,322 - MPMX19_04496 0.10 +0.8
864,322 - MPMX19_04496 0.10 +1.3
864,322 - MPMX19_04496 0.10 -2.4
864,474 + MPMX19_04496 0.23 -0.5
864,474 + MPMX19_04496 0.23 -0.4
864,474 + MPMX19_04496 0.23 -0.2
864,474 + MPMX19_04496 0.23 -0.5
864,474 + MPMX19_04496 0.23 -0.8
864,474 + MPMX19_04496 0.23 +0.9
864,474 + MPMX19_04496 0.23 -0.5
864,475 - MPMX19_04496 0.23 +0.8
864,475 - MPMX19_04496 0.23 -1.5
864,561 + MPMX19_04496 0.31 -1.2
864,576 + MPMX19_04496 0.32 +0.4
864,576 + MPMX19_04496 0.32 +0.8
864,577 - MPMX19_04496 0.32 -1.2
864,577 - MPMX19_04496 0.32 -0.5
864,577 - MPMX19_04496 0.32 +0.9
864,577 - MPMX19_04496 0.32 +0.8
864,577 - MPMX19_04496 0.32 -0.1
864,577 - MPMX19_04496 0.32 -1.4
864,588 + MPMX19_04496 0.33 +0.6
864,588 + MPMX19_04496 0.33 -0.3
864,588 + MPMX19_04496 0.33 -2.1
864,588 + MPMX19_04496 0.33 +0.2
864,589 - MPMX19_04496 0.33 -0.6
864,589 - MPMX19_04496 0.33 +0.9
864,589 - MPMX19_04496 0.33 -1.0
864,589 - MPMX19_04496 0.33 -0.7
864,589 - MPMX19_04496 0.33 +0.3
864,589 - MPMX19_04496 0.33 -0.5
864,589 - MPMX19_04496 0.33 +0.0
864,750 + MPMX19_04496 0.47 -0.1
864,750 + MPMX19_04496 0.47 +0.2
864,750 + MPMX19_04496 0.47 +1.0
864,751 - MPMX19_04496 0.47 -0.7
864,751 - MPMX19_04496 0.47 +1.0
864,751 - MPMX19_04496 0.47 +0.0
864,751 - MPMX19_04496 0.47 -0.4
864,751 - MPMX19_04496 0.47 -0.1
864,759 + MPMX19_04496 0.48 -1.7
864,759 + MPMX19_04496 0.48 -0.5
864,759 + MPMX19_04496 0.48 -2.0
864,759 + MPMX19_04496 0.48 +0.3
864,759 + MPMX19_04496 0.48 +0.8
864,759 + MPMX19_04496 0.48 +0.3
864,760 - MPMX19_04496 0.48 -0.8
864,760 - MPMX19_04496 0.48 -1.2
864,760 - MPMX19_04496 0.48 -0.2
864,760 - MPMX19_04496 0.48 -2.2
864,760 - MPMX19_04496 0.48 -1.2
864,760 - MPMX19_04496 0.48 -0.8
864,760 - MPMX19_04496 0.48 -0.8
864,760 - MPMX19_04496 0.48 -0.1
864,760 - MPMX19_04496 0.48 +0.6
864,760 - MPMX19_04496 0.48 -0.6
864,885 + MPMX19_04496 0.59 +1.4
864,885 + MPMX19_04496 0.59 +0.4
864,885 + MPMX19_04496 0.59 +1.6
864,885 + MPMX19_04496 0.59 -1.0
864,885 + MPMX19_04496 0.59 -0.0
864,885 + MPMX19_04496 0.59 -0.4
864,885 + MPMX19_04496 0.59 -0.4
864,885 + MPMX19_04496 0.59 +0.0
864,885 + MPMX19_04496 0.59 -1.0
864,885 + MPMX19_04496 0.59 +1.1
864,885 + MPMX19_04496 0.59 +1.0
864,885 + MPMX19_04496 0.59 -0.1
864,885 + MPMX19_04496 0.59 +0.5
864,886 - MPMX19_04496 0.59 +0.3
864,886 - MPMX19_04496 0.59 -1.1
864,886 - MPMX19_04496 0.59 +0.2
864,886 - MPMX19_04496 0.59 +0.3
864,886 - MPMX19_04496 0.59 +0.1
864,886 - MPMX19_04496 0.59 -1.4
864,886 - MPMX19_04496 0.59 -1.4
864,886 - MPMX19_04496 0.59 +0.5
864,886 - MPMX19_04496 0.59 -1.0
864,886 - MPMX19_04496 0.59 +1.2
864,886 - MPMX19_04496 0.59 +1.2
864,886 - MPMX19_04496 0.59 +0.3
864,886 - MPMX19_04496 0.59 +0.0
864,886 - MPMX19_04496 0.59 +0.0
864,886 - MPMX19_04496 0.59 -1.6
864,886 - MPMX19_04496 0.59 -0.2
864,886 - MPMX19_04496 0.59 -0.5
864,894 + MPMX19_04496 0.60 -0.2
864,894 + MPMX19_04496 0.60 +0.6
864,894 + MPMX19_04496 0.60 -0.5
864,894 + MPMX19_04496 0.60 +1.2
864,894 + MPMX19_04496 0.60 -1.0
864,894 + MPMX19_04496 0.60 -1.0
864,894 + MPMX19_04496 0.60 +0.9
864,894 + MPMX19_04496 0.60 -2.2
864,894 + MPMX19_04496 0.60 +0.3
864,894 + MPMX19_04496 0.60 +0.2
864,894 + MPMX19_04496 0.60 +0.2
864,894 + MPMX19_04496 0.60 +0.6
864,894 + MPMX19_04496 0.60 -0.1
864,894 + MPMX19_04496 0.60 +0.3
864,894 + MPMX19_04496 0.60 +0.6
864,894 + MPMX19_04496 0.60 -1.0
864,895 - MPMX19_04496 0.60 +2.3
864,895 - MPMX19_04496 0.60 -0.7
864,895 - MPMX19_04496 0.60 +0.0
864,895 - MPMX19_04496 0.60 +0.1
864,895 - MPMX19_04496 0.60 +1.4
864,895 - MPMX19_04496 0.60 -0.2
864,895 - MPMX19_04496 0.60 +0.8
864,895 - MPMX19_04496 0.60 +1.9
864,895 - MPMX19_04496 0.60 -0.2
864,895 - MPMX19_04496 0.60 +0.0
864,895 - MPMX19_04496 0.60 -1.0
864,927 + MPMX19_04496 0.62 -0.8
864,927 + MPMX19_04496 0.62 -0.2
864,927 + MPMX19_04496 0.62 +0.1
864,927 + MPMX19_04496 0.62 +0.9
864,927 + MPMX19_04496 0.62 +0.3
864,927 + MPMX19_04496 0.62 -0.7
864,927 + MPMX19_04496 0.62 -0.5
864,927 + MPMX19_04496 0.62 -0.1
864,927 + MPMX19_04496 0.62 -1.0
864,927 + MPMX19_04496 0.62 +0.3
864,927 + MPMX19_04496 0.62 -0.1
864,927 + MPMX19_04496 0.62 -1.1
864,927 + MPMX19_04496 0.62 -0.2
864,928 - MPMX19_04496 0.63 +0.6
864,928 - MPMX19_04496 0.63 +0.0
864,928 - MPMX19_04496 0.63 -0.9
864,928 - MPMX19_04496 0.63 -0.1
864,928 - MPMX19_04496 0.63 -0.8
864,928 - MPMX19_04496 0.63 -2.5
864,928 - MPMX19_04496 0.63 -1.4
864,928 - MPMX19_04496 0.63 -1.0
864,928 - MPMX19_04496 0.63 -1.5
864,928 - MPMX19_04496 0.63 -1.0
864,945 + MPMX19_04496 0.64 -3.3
864,945 + MPMX19_04496 0.64 -0.7
864,946 - MPMX19_04496 0.64 -0.5
864,946 - MPMX19_04496 0.64 +0.0
864,946 - MPMX19_04496 0.64 +0.0
864,951 + MPMX19_04496 0.65 +0.2
864,951 + MPMX19_04496 0.65 -0.7
864,951 + MPMX19_04496 0.65 -0.5
864,952 - MPMX19_04496 0.65 +0.1
864,952 - MPMX19_04496 0.65 -1.0
864,952 - MPMX19_04496 0.65 +0.0

Or see this region's nucleotide sequence