Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03455 and MPMX19_03456 are separated by 264 nucleotides MPMX19_03456 and MPMX19_03457 are separated by 11 nucleotides MPMX19_03457 and MPMX19_03458 are separated by 291 nucleotides
MPMX19_03455: MPMX19_03455 - HTH-type transcriptional repressor NagR, at 852,155 to 852,874
_03455
MPMX19_03456: MPMX19_03456 - hypothetical protein, at 853,139 to 853,303
_03456
MPMX19_03457: MPMX19_03457 - hypothetical protein, at 853,315 to 855,117
_03457
MPMX19_03458: MPMX19_03458 - hypothetical protein, at 855,409 to 856,488
_03458
Position (kb) 853
854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.642 kb on - strand, within MPMX19_03455 at 852.872 kb on + strand at 852.872 kb on + strand at 852.872 kb on + strand at 853.301 kb on + strand at 853.302 kb on - strand at 853.302 kb on - strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.323 kb on + strand at 853.324 kb on - strand at 853.324 kb on - strand at 853.324 kb on - strand at 853.324 kb on - strand at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.655 kb on + strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.656 kb on - strand, within MPMX19_03457 at 853.728 kb on + strand, within MPMX19_03457 at 853.728 kb on + strand, within MPMX19_03457 at 853.859 kb on + strand, within MPMX19_03457 at 853.860 kb on - strand, within MPMX19_03457 at 853.926 kb on + strand, within MPMX19_03457 at 853.926 kb on + strand, within MPMX19_03457 at 853.927 kb on - strand, within MPMX19_03457 at 853.927 kb on - strand, within MPMX19_03457 at 853.927 kb on - strand, within MPMX19_03457 at 853.927 kb on - strand, within MPMX19_03457 at 854.082 kb on + strand, within MPMX19_03457 at 854.082 kb on + strand, within MPMX19_03457 at 854.082 kb on + strand, within MPMX19_03457 at 854.082 kb on + strand, within MPMX19_03457 at 854.082 kb on + strand, within MPMX19_03457 at 854.082 kb on + strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.083 kb on - strand, within MPMX19_03457 at 854.165 kb on + strand, within MPMX19_03457 at 854.166 kb on - strand, within MPMX19_03457 at 854.198 kb on + strand, within MPMX19_03457 at 854.199 kb on - strand, within MPMX19_03457 at 854.199 kb on - strand, within MPMX19_03457 at 854.199 kb on - strand, within MPMX19_03457 at 854.199 kb on - strand, within MPMX19_03457 at 854.564 kb on + strand, within MPMX19_03457 at 854.564 kb on + strand, within MPMX19_03457 at 854.565 kb on - strand, within MPMX19_03457 at 854.882 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.912 kb on + strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 854.913 kb on - strand, within MPMX19_03457 at 855.117 kb on + strand at 855.117 kb on + strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.118 kb on - strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.140 kb on + strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.141 kb on - strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.170 kb on + strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.171 kb on - strand at 855.177 kb on - strand at 855.177 kb on - strand at 855.177 kb on - strand at 855.244 kb on + strand at 855.244 kb on + strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.245 kb on - strand at 855.331 kb on + strand at 855.366 kb on - strand at 855.462 kb on + strand at 855.462 kb on + strand at 855.462 kb on + strand at 855.463 kb on - strand at 855.463 kb on - strand at 855.463 kb on - strand at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.520 kb on + strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.521 kb on - strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.690 kb on + strand, within MPMX19_03458 at 855.691 kb on - strand, within MPMX19_03458 at 855.715 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.733 kb on + strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458 at 855.734 kb on - strand, within MPMX19_03458
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 852,642 - MPMX19_03455 0.68 -1.8 852,642 - MPMX19_03455 0.68 -1.6 852,642 - MPMX19_03455 0.68 -0.8 852,642 - MPMX19_03455 0.68 -2.3 852,872 + -1.0 852,872 + +0.1 852,872 + -0.8 853,301 + -0.6 853,302 - -1.5 853,302 - +0.5 853,323 + -2.5 853,323 + -2.6 853,323 + -0.2 853,323 + -0.4 853,323 + -0.0 853,323 + -1.2 853,323 + -1.0 853,324 - -0.8 853,324 - -0.1 853,324 - -0.3 853,324 - +0.5 853,655 + MPMX19_03457 0.19 +0.3 853,655 + MPMX19_03457 0.19 -0.5 853,655 + MPMX19_03457 0.19 -0.2 853,655 + MPMX19_03457 0.19 -1.6 853,655 + MPMX19_03457 0.19 -0.9 853,655 + MPMX19_03457 0.19 +0.5 853,655 + MPMX19_03457 0.19 +0.3 853,655 + MPMX19_03457 0.19 -1.0 853,655 + MPMX19_03457 0.19 -1.0 853,655 + MPMX19_03457 0.19 +0.0 853,655 + MPMX19_03457 0.19 -1.0 853,656 - MPMX19_03457 0.19 -1.0 853,656 - MPMX19_03457 0.19 -1.0 853,656 - MPMX19_03457 0.19 -0.8 853,656 - MPMX19_03457 0.19 -0.9 853,728 + MPMX19_03457 0.23 -0.6 853,728 + MPMX19_03457 0.23 -0.5 853,859 + MPMX19_03457 0.30 -0.8 853,860 - MPMX19_03457 0.30 +0.2 853,926 + MPMX19_03457 0.34 +1.0 853,926 + MPMX19_03457 0.34 +0.2 853,927 - MPMX19_03457 0.34 +1.7 853,927 - MPMX19_03457 0.34 +0.7 853,927 - MPMX19_03457 0.34 +0.4 853,927 - MPMX19_03457 0.34 -1.3 854,082 + MPMX19_03457 0.43 +1.5 854,082 + MPMX19_03457 0.43 -0.2 854,082 + MPMX19_03457 0.43 +1.0 854,082 + MPMX19_03457 0.43 -0.0 854,082 + MPMX19_03457 0.43 -1.9 854,082 + MPMX19_03457 0.43 -0.5 854,083 - MPMX19_03457 0.43 -1.5 854,083 - MPMX19_03457 0.43 -1.7 854,083 - MPMX19_03457 0.43 -0.9 854,083 - MPMX19_03457 0.43 -2.2 854,083 - MPMX19_03457 0.43 -0.0 854,083 - MPMX19_03457 0.43 -0.8 854,083 - MPMX19_03457 0.43 -0.9 854,083 - MPMX19_03457 0.43 +0.4 854,165 + MPMX19_03457 0.47 -0.6 854,166 - MPMX19_03457 0.47 +1.2 854,198 + MPMX19_03457 0.49 -0.3 854,199 - MPMX19_03457 0.49 -0.3 854,199 - MPMX19_03457 0.49 +0.8 854,199 - MPMX19_03457 0.49 -2.0 854,199 - MPMX19_03457 0.49 +0.1 854,564 + MPMX19_03457 0.69 -0.2 854,564 + MPMX19_03457 0.69 +1.4 854,565 - MPMX19_03457 0.69 -0.2 854,882 + MPMX19_03457 0.87 +0.3 854,912 + MPMX19_03457 0.89 -0.5 854,912 + MPMX19_03457 0.89 -1.3 854,912 + MPMX19_03457 0.89 +0.1 854,912 + MPMX19_03457 0.89 -2.2 854,912 + MPMX19_03457 0.89 -0.3 854,912 + MPMX19_03457 0.89 -1.5 854,913 - MPMX19_03457 0.89 -0.3 854,913 - MPMX19_03457 0.89 -0.5 854,913 - MPMX19_03457 0.89 -0.7 854,913 - MPMX19_03457 0.89 +0.5 854,913 - MPMX19_03457 0.89 +1.0 854,913 - MPMX19_03457 0.89 +0.7 855,117 + +0.2 855,117 + -0.3 855,118 - -0.7 855,118 - -1.6 855,118 - +0.1 855,118 - -1.3 855,118 - +0.5 855,140 + +0.1 855,140 + +0.8 855,140 + -0.8 855,140 + -1.0 855,140 + -0.0 855,141 - -1.5 855,141 - +0.3 855,141 - +0.2 855,141 - -0.2 855,141 - -1.5 855,170 + -1.5 855,170 + -1.5 855,170 + -0.3 855,170 + +0.2 855,170 + +1.0 855,170 + +0.2 855,170 + +1.0 855,171 - +0.7 855,171 - -0.7 855,171 - -0.4 855,171 - -0.2 855,171 - +1.5 855,171 - -0.8 855,171 - -0.1 855,171 - -0.7 855,177 - +0.8 855,177 - -0.1 855,177 - -1.5 855,244 + -1.5 855,244 + -1.2 855,245 - -0.7 855,245 - -0.6 855,245 - -2.8 855,245 - +0.3 855,245 - -1.8 855,331 + -0.0 855,366 - -0.9 855,462 + -0.1 855,462 + -1.8 855,462 + -0.7 855,463 - +0.4 855,463 - -2.2 855,463 - -2.5 855,520 + MPMX19_03458 0.10 -0.3 855,520 + MPMX19_03458 0.10 +0.7 855,520 + MPMX19_03458 0.10 -1.5 855,520 + MPMX19_03458 0.10 -2.0 855,520 + MPMX19_03458 0.10 +4.4 855,520 + MPMX19_03458 0.10 +0.5 855,520 + MPMX19_03458 0.10 -1.1 855,520 + MPMX19_03458 0.10 -0.0 855,521 - MPMX19_03458 0.10 -0.7 855,521 - MPMX19_03458 0.10 -0.3 855,521 - MPMX19_03458 0.10 -0.8 855,521 - MPMX19_03458 0.10 -1.1 855,521 - MPMX19_03458 0.10 -0.0 855,521 - MPMX19_03458 0.10 -0.6 855,690 + MPMX19_03458 0.26 -0.0 855,690 + MPMX19_03458 0.26 +0.3 855,690 + MPMX19_03458 0.26 +1.0 855,691 - MPMX19_03458 0.26 -0.7 855,715 + MPMX19_03458 0.28 -0.9 855,733 + MPMX19_03458 0.30 +1.1 855,733 + MPMX19_03458 0.30 -1.2 855,733 + MPMX19_03458 0.30 -0.1 855,733 + MPMX19_03458 0.30 -0.0 855,733 + MPMX19_03458 0.30 -0.8 855,733 + MPMX19_03458 0.30 -1.5 855,733 + MPMX19_03458 0.30 -0.5 855,733 + MPMX19_03458 0.30 -1.0 855,733 + MPMX19_03458 0.30 +0.7 855,733 + MPMX19_03458 0.30 -1.7 855,733 + MPMX19_03458 0.30 -0.9 855,733 + MPMX19_03458 0.30 +0.3 855,733 + MPMX19_03458 0.30 -1.0 855,734 - MPMX19_03458 0.30 -0.3 855,734 - MPMX19_03458 0.30 -1.2 855,734 - MPMX19_03458 0.30 -1.3 855,734 - MPMX19_03458 0.30 +0.2 855,734 - MPMX19_03458 0.30 -0.5 855,734 - MPMX19_03458 0.30 +0.5 855,734 - MPMX19_03458 0.30 -1.6 855,734 - MPMX19_03458 0.30 -2.5 855,734 - MPMX19_03458 0.30 -0.8 855,734 - MPMX19_03458 0.30 -0.5 855,734 - MPMX19_03458 0.30 -1.0 855,734 - MPMX19_03458 0.30 -0.0 855,734 - MPMX19_03458 0.30 +1.2 855,734 - MPMX19_03458 0.30 -0.2 855,734 - MPMX19_03458 0.30 +1.0
Or see this region's nucleotide sequence