Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02886 and MPMX19_02887 are separated by 131 nucleotides MPMX19_02887 and MPMX19_02888 are separated by 183 nucleotides
MPMX19_02886: MPMX19_02886 - HTH-type transcriptional regulator CynR, at 136,552 to 137,484
_02886
MPMX19_02887: MPMX19_02887 - Methyl-accepting chemotaxis protein, at 137,616 to 139,310
_02887
MPMX19_02888: MPMX19_02888 - 6-phosphogluconolactonase, at 139,494 to 140,594
_02888
Position (kb) 137
138
139
140 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.224 kb on + strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.225 kb on - strand, within MPMX19_02886 at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.521 kb on + strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.522 kb on - strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.523 kb on + strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.524 kb on - strand at 137.527 kb on - strand at 137.527 kb on - strand at 137.527 kb on - strand at 137.569 kb on + strand at 137.575 kb on - strand at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.877 kb on + strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.878 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.896 kb on - strand, within MPMX19_02887 at 137.907 kb on + strand, within MPMX19_02887 at 137.908 kb on - strand, within MPMX19_02887 at 137.908 kb on - strand, within MPMX19_02887 at 137.997 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.054 kb on + strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.055 kb on - strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.102 kb on + strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.103 kb on - strand, within MPMX19_02887 at 138.115 kb on - strand, within MPMX19_02887 at 138.150 kb on + strand, within MPMX19_02887 at 138.151 kb on - strand, within MPMX19_02887 at 138.151 kb on - strand, within MPMX19_02887 at 138.175 kb on - strand, within MPMX19_02887 at 138.232 kb on + strand, within MPMX19_02887 at 138.232 kb on + strand, within MPMX19_02887 at 138.233 kb on - strand, within MPMX19_02887 at 138.233 kb on - strand, within MPMX19_02887 at 139.334 kb on - strand at 139.334 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.336 kb on - strand at 139.492 kb on + strand at 139.588 kb on + strand at 139.589 kb on - strand at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.762 kb on + strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.763 kb on - strand, within MPMX19_02888 at 139.879 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.921 kb on + strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 139.922 kb on - strand, within MPMX19_02888 at 140.198 kb on - strand, within MPMX19_02888 at 140.198 kb on - strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.215 kb on + strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888 at 140.216 kb on - strand, within MPMX19_02888
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 137,224 + MPMX19_02886 0.72 +0.1 137,224 + MPMX19_02886 0.72 -0.1 137,224 + MPMX19_02886 0.72 -0.7 137,224 + MPMX19_02886 0.72 -0.2 137,224 + MPMX19_02886 0.72 +0.7 137,224 + MPMX19_02886 0.72 +0.4 137,224 + MPMX19_02886 0.72 -0.4 137,224 + MPMX19_02886 0.72 -0.7 137,224 + MPMX19_02886 0.72 +0.7 137,224 + MPMX19_02886 0.72 -1.4 137,224 + MPMX19_02886 0.72 +0.4 137,224 + MPMX19_02886 0.72 -0.8 137,224 + MPMX19_02886 0.72 -1.0 137,224 + MPMX19_02886 0.72 +0.1 137,224 + MPMX19_02886 0.72 -0.1 137,224 + MPMX19_02886 0.72 -0.3 137,224 + MPMX19_02886 0.72 -0.4 137,224 + MPMX19_02886 0.72 -1.1 137,224 + MPMX19_02886 0.72 +0.4 137,224 + MPMX19_02886 0.72 -1.7 137,224 + MPMX19_02886 0.72 -0.0 137,224 + MPMX19_02886 0.72 +0.5 137,224 + MPMX19_02886 0.72 +0.5 137,225 - MPMX19_02886 0.72 -0.0 137,225 - MPMX19_02886 0.72 -0.3 137,225 - MPMX19_02886 0.72 +0.7 137,225 - MPMX19_02886 0.72 -1.5 137,225 - MPMX19_02886 0.72 -0.9 137,225 - MPMX19_02886 0.72 -0.1 137,225 - MPMX19_02886 0.72 -1.0 137,225 - MPMX19_02886 0.72 +1.3 137,225 - MPMX19_02886 0.72 +0.2 137,225 - MPMX19_02886 0.72 -0.5 137,225 - MPMX19_02886 0.72 -0.3 137,225 - MPMX19_02886 0.72 +1.4 137,225 - MPMX19_02886 0.72 +0.6 137,225 - MPMX19_02886 0.72 +0.1 137,225 - MPMX19_02886 0.72 +0.2 137,225 - MPMX19_02886 0.72 +0.1 137,225 - MPMX19_02886 0.72 -0.0 137,521 + -1.0 137,521 + -0.7 137,521 + -0.0 137,521 + -0.7 137,521 + +1.4 137,521 + -1.4 137,522 - -0.2 137,522 - -2.9 137,522 - -0.7 137,522 - -1.5 137,522 - -0.2 137,522 - -0.1 137,522 - +0.4 137,522 - -1.7 137,522 - -2.1 137,522 - -1.0 137,522 - -0.8 137,523 + -1.0 137,523 + +0.8 137,523 + -0.6 137,523 + -1.4 137,524 - +0.5 137,524 - -0.4 137,524 - -0.3 137,524 - -2.2 137,527 - -2.3 137,527 - -0.0 137,527 - -1.0 137,569 + -0.0 137,575 - +0.3 137,877 + MPMX19_02887 0.15 -0.7 137,877 + MPMX19_02887 0.15 +0.7 137,877 + MPMX19_02887 0.15 +0.6 137,877 + MPMX19_02887 0.15 -2.2 137,877 + MPMX19_02887 0.15 -1.2 137,877 + MPMX19_02887 0.15 +0.8 137,878 - MPMX19_02887 0.15 -0.4 137,878 - MPMX19_02887 0.15 +0.6 137,878 - MPMX19_02887 0.15 +0.1 137,878 - MPMX19_02887 0.15 -0.0 137,878 - MPMX19_02887 0.15 -0.6 137,878 - MPMX19_02887 0.15 -0.9 137,896 - MPMX19_02887 0.17 -1.9 137,896 - MPMX19_02887 0.17 -1.3 137,896 - MPMX19_02887 0.17 -1.1 137,907 + MPMX19_02887 0.17 +0.2 137,908 - MPMX19_02887 0.17 +0.4 137,908 - MPMX19_02887 0.17 -0.0 137,997 + MPMX19_02887 0.22 -1.2 138,054 + MPMX19_02887 0.26 -0.3 138,054 + MPMX19_02887 0.26 +0.7 138,054 + MPMX19_02887 0.26 +1.4 138,054 + MPMX19_02887 0.26 -1.6 138,054 + MPMX19_02887 0.26 +0.4 138,054 + MPMX19_02887 0.26 +1.4 138,054 + MPMX19_02887 0.26 -1.0 138,054 + MPMX19_02887 0.26 +0.4 138,054 + MPMX19_02887 0.26 +0.2 138,054 + MPMX19_02887 0.26 -0.5 138,054 + MPMX19_02887 0.26 -1.0 138,054 + MPMX19_02887 0.26 +0.3 138,054 + MPMX19_02887 0.26 -0.5 138,054 + MPMX19_02887 0.26 -0.1 138,054 + MPMX19_02887 0.26 -1.7 138,055 - MPMX19_02887 0.26 -0.3 138,055 - MPMX19_02887 0.26 +0.6 138,055 - MPMX19_02887 0.26 -0.4 138,055 - MPMX19_02887 0.26 -0.9 138,055 - MPMX19_02887 0.26 -2.0 138,055 - MPMX19_02887 0.26 -0.6 138,055 - MPMX19_02887 0.26 -1.0 138,055 - MPMX19_02887 0.26 -2.6 138,055 - MPMX19_02887 0.26 -0.6 138,055 - MPMX19_02887 0.26 -0.3 138,055 - MPMX19_02887 0.26 -0.7 138,055 - MPMX19_02887 0.26 -1.0 138,102 + MPMX19_02887 0.29 -1.4 138,102 + MPMX19_02887 0.29 +0.4 138,102 + MPMX19_02887 0.29 -1.2 138,102 + MPMX19_02887 0.29 +1.2 138,102 + MPMX19_02887 0.29 -1.2 138,102 + MPMX19_02887 0.29 -1.5 138,102 + MPMX19_02887 0.29 -1.0 138,102 + MPMX19_02887 0.29 -0.9 138,102 + MPMX19_02887 0.29 +0.2 138,102 + MPMX19_02887 0.29 -2.3 138,102 + MPMX19_02887 0.29 -0.0 138,102 + MPMX19_02887 0.29 -0.0 138,103 - MPMX19_02887 0.29 +1.1 138,103 - MPMX19_02887 0.29 -0.7 138,103 - MPMX19_02887 0.29 -1.0 138,103 - MPMX19_02887 0.29 -1.3 138,103 - MPMX19_02887 0.29 -1.2 138,103 - MPMX19_02887 0.29 -0.6 138,115 - MPMX19_02887 0.29 +0.6 138,150 + MPMX19_02887 0.32 -0.0 138,151 - MPMX19_02887 0.32 -0.4 138,151 - MPMX19_02887 0.32 -0.6 138,175 - MPMX19_02887 0.33 -1.0 138,232 + MPMX19_02887 0.36 -1.7 138,232 + MPMX19_02887 0.36 -0.7 138,233 - MPMX19_02887 0.36 -0.3 138,233 - MPMX19_02887 0.36 +0.4 139,334 - +0.1 139,334 - -0.4 139,336 - +0.8 139,336 - -0.1 139,336 - +0.5 139,336 - -0.9 139,336 - -1.6 139,336 - -0.5 139,336 - -1.2 139,336 - +0.3 139,336 - +1.2 139,492 + +0.1 139,588 + -0.6 139,589 - +0.4 139,762 + MPMX19_02888 0.24 -0.0 139,762 + MPMX19_02888 0.24 -0.6 139,762 + MPMX19_02888 0.24 -0.2 139,762 + MPMX19_02888 0.24 +0.7 139,763 - MPMX19_02888 0.24 +1.0 139,763 - MPMX19_02888 0.24 -0.8 139,763 - MPMX19_02888 0.24 -1.1 139,763 - MPMX19_02888 0.24 +1.4 139,763 - MPMX19_02888 0.24 -0.7 139,763 - MPMX19_02888 0.24 -0.6 139,763 - MPMX19_02888 0.24 -0.0 139,879 + MPMX19_02888 0.35 -1.1 139,921 + MPMX19_02888 0.39 +0.4 139,921 + MPMX19_02888 0.39 -0.8 139,921 + MPMX19_02888 0.39 +0.9 139,921 + MPMX19_02888 0.39 -0.0 139,921 + MPMX19_02888 0.39 -0.2 139,921 + MPMX19_02888 0.39 +0.3 139,921 + MPMX19_02888 0.39 -0.4 139,922 - MPMX19_02888 0.39 -0.7 139,922 - MPMX19_02888 0.39 -0.3 139,922 - MPMX19_02888 0.39 -1.2 139,922 - MPMX19_02888 0.39 +0.3 139,922 - MPMX19_02888 0.39 -0.4 140,198 - MPMX19_02888 0.64 +0.4 140,198 - MPMX19_02888 0.64 -0.3 140,215 + MPMX19_02888 0.65 -0.6 140,215 + MPMX19_02888 0.65 -0.3 140,215 + MPMX19_02888 0.65 +1.4 140,215 + MPMX19_02888 0.65 -1.1 140,215 + MPMX19_02888 0.65 +1.0 140,215 + MPMX19_02888 0.65 -1.4 140,215 + MPMX19_02888 0.65 +0.6 140,215 + MPMX19_02888 0.65 -0.4 140,215 + MPMX19_02888 0.65 +1.4 140,215 + MPMX19_02888 0.65 -1.4 140,215 + MPMX19_02888 0.65 -0.8 140,216 - MPMX19_02888 0.66 +0.3 140,216 - MPMX19_02888 0.66 -0.9 140,216 - MPMX19_02888 0.66 +0.5 140,216 - MPMX19_02888 0.66 -1.4 140,216 - MPMX19_02888 0.66 -0.5 140,216 - MPMX19_02888 0.66 -0.2 140,216 - MPMX19_02888 0.66 -0.4
Or see this region's nucleotide sequence