Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02819 and MPMX19_02820 are separated by 138 nucleotides MPMX19_02820 and MPMX19_02821 are separated by 5 nucleotides
MPMX19_02819: MPMX19_02819 - hypothetical protein, at 55,983 to 56,843
_02819
MPMX19_02820: MPMX19_02820 - HTH-type transcriptional regulator NorG, at 56,982 to 58,394
_02820
MPMX19_02821: MPMX19_02821 - Sensor histidine kinase RcsC, at 58,400 to 61,618
_02821
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.922 kb on + strand at 56.923 kb on - strand at 56.959 kb on - strand at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.406 kb on - strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.642 kb on + strand, within MPMX19_02820 at 57.643 kb on - strand, within MPMX19_02820 at 57.643 kb on - strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.645 kb on - strand, within MPMX19_02820 at 57.645 kb on - strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.954 kb on + strand, within MPMX19_02820 at 57.954 kb on + strand, within MPMX19_02820 at 57.954 kb on + strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 58.074 kb on + strand, within MPMX19_02820 at 58.075 kb on - strand, within MPMX19_02820 at 58.075 kb on - strand, within MPMX19_02820 at 58.075 kb on - strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.312 kb on + strand at 58.312 kb on + strand at 58.313 kb on - strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.392 kb on + strand at 58.392 kb on + strand at 58.392 kb on + strand at 58.819 kb on + strand, within MPMX19_02821 at 58.819 kb on + strand, within MPMX19_02821 at 58.820 kb on - strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 59.091 kb on - strand, within MPMX19_02821 at 59.091 kb on - strand, within MPMX19_02821
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 56,197 + MPMX19_02819 0.25 -1.7 56,197 + MPMX19_02819 0.25 -1.0 56,197 + MPMX19_02819 0.25 +0.3 56,197 + MPMX19_02819 0.25 +0.4 56,197 + MPMX19_02819 0.25 -1.0 56,198 - MPMX19_02819 0.25 -0.1 56,198 - MPMX19_02819 0.25 -2.7 56,198 - MPMX19_02819 0.25 +1.3 56,198 - MPMX19_02819 0.25 +1.1 56,198 - MPMX19_02819 0.25 +0.5 56,198 - MPMX19_02819 0.25 -0.4 56,198 - MPMX19_02819 0.25 +1.7 56,198 - MPMX19_02819 0.25 -0.0 56,198 - MPMX19_02819 0.25 -1.3 56,353 + MPMX19_02819 0.43 +0.6 56,353 + MPMX19_02819 0.43 +0.2 56,353 + MPMX19_02819 0.43 -0.2 56,353 + MPMX19_02819 0.43 -0.4 56,353 + MPMX19_02819 0.43 -1.3 56,922 + -0.4 56,923 - +0.2 56,959 - -0.1 57,132 + MPMX19_02820 0.11 -0.2 57,132 + MPMX19_02820 0.11 -0.9 57,132 + MPMX19_02820 0.11 -0.9 57,132 + MPMX19_02820 0.11 -0.4 57,132 + MPMX19_02820 0.11 -0.3 57,132 + MPMX19_02820 0.11 -0.9 57,133 - MPMX19_02820 0.11 -0.6 57,133 - MPMX19_02820 0.11 +0.1 57,133 - MPMX19_02820 0.11 -0.9 57,133 - MPMX19_02820 0.11 -0.0 57,133 - MPMX19_02820 0.11 -1.1 57,133 - MPMX19_02820 0.11 +0.6 57,186 + MPMX19_02820 0.14 +0.6 57,186 + MPMX19_02820 0.14 -0.6 57,186 + MPMX19_02820 0.14 -0.4 57,186 + MPMX19_02820 0.14 +0.4 57,186 + MPMX19_02820 0.14 -0.7 57,186 + MPMX19_02820 0.14 -0.7 57,186 + MPMX19_02820 0.14 -1.6 57,186 + MPMX19_02820 0.14 -0.9 57,186 + MPMX19_02820 0.14 -2.8 57,186 + MPMX19_02820 0.14 -1.0 57,186 + MPMX19_02820 0.14 -0.9 57,187 - MPMX19_02820 0.15 +0.5 57,187 - MPMX19_02820 0.15 +0.6 57,187 - MPMX19_02820 0.15 -2.1 57,187 - MPMX19_02820 0.15 -0.5 57,187 - MPMX19_02820 0.15 +0.4 57,187 - MPMX19_02820 0.15 -0.6 57,187 - MPMX19_02820 0.15 -0.7 57,187 - MPMX19_02820 0.15 +0.2 57,187 - MPMX19_02820 0.15 -0.4 57,187 - MPMX19_02820 0.15 +0.6 57,187 - MPMX19_02820 0.15 -0.4 57,406 - MPMX19_02820 0.30 -0.3 57,585 + MPMX19_02820 0.43 -0.9 57,585 + MPMX19_02820 0.43 +1.0 57,585 + MPMX19_02820 0.43 +0.3 57,585 + MPMX19_02820 0.43 -0.2 57,585 + MPMX19_02820 0.43 +0.8 57,586 - MPMX19_02820 0.43 -0.7 57,586 - MPMX19_02820 0.43 +0.2 57,586 - MPMX19_02820 0.43 -1.3 57,586 - MPMX19_02820 0.43 -0.6 57,586 - MPMX19_02820 0.43 -0.2 57,586 - MPMX19_02820 0.43 +0.4 57,642 + MPMX19_02820 0.47 -1.1 57,643 - MPMX19_02820 0.47 -0.4 57,643 - MPMX19_02820 0.47 -0.2 57,644 + MPMX19_02820 0.47 -1.1 57,644 + MPMX19_02820 0.47 +0.3 57,644 + MPMX19_02820 0.47 -0.4 57,644 + MPMX19_02820 0.47 -0.7 57,645 - MPMX19_02820 0.47 -1.6 57,645 - MPMX19_02820 0.47 +0.3 57,708 + MPMX19_02820 0.51 -1.0 57,708 + MPMX19_02820 0.51 -0.7 57,708 + MPMX19_02820 0.51 -0.9 57,708 + MPMX19_02820 0.51 -0.8 57,708 + MPMX19_02820 0.51 +1.6 57,708 + MPMX19_02820 0.51 -1.0 57,708 + MPMX19_02820 0.51 +0.6 57,708 + MPMX19_02820 0.51 -0.4 57,709 - MPMX19_02820 0.51 -0.5 57,709 - MPMX19_02820 0.51 -1.4 57,709 - MPMX19_02820 0.51 +0.2 57,709 - MPMX19_02820 0.51 +2.2 57,954 + MPMX19_02820 0.69 -0.7 57,954 + MPMX19_02820 0.69 -0.1 57,954 + MPMX19_02820 0.69 -2.0 57,955 - MPMX19_02820 0.69 -2.4 57,955 - MPMX19_02820 0.69 +0.3 57,955 - MPMX19_02820 0.69 -0.3 57,955 - MPMX19_02820 0.69 -0.0 57,955 - MPMX19_02820 0.69 +0.8 57,955 - MPMX19_02820 0.69 -0.4 57,955 - MPMX19_02820 0.69 -0.5 57,955 - MPMX19_02820 0.69 -1.0 58,074 + MPMX19_02820 0.77 -2.0 58,075 - MPMX19_02820 0.77 +1.0 58,075 - MPMX19_02820 0.77 -0.6 58,075 - MPMX19_02820 0.77 +2.0 58,188 + MPMX19_02820 0.85 +0.4 58,188 + MPMX19_02820 0.85 +1.6 58,188 + MPMX19_02820 0.85 -0.3 58,188 + MPMX19_02820 0.85 +0.9 58,188 + MPMX19_02820 0.85 +0.8 58,188 + MPMX19_02820 0.85 -2.2 58,188 + MPMX19_02820 0.85 -0.0 58,188 + MPMX19_02820 0.85 -1.0 58,188 + MPMX19_02820 0.85 +0.7 58,189 - MPMX19_02820 0.85 +0.3 58,189 - MPMX19_02820 0.85 -2.2 58,189 - MPMX19_02820 0.85 -1.4 58,189 - MPMX19_02820 0.85 -1.9 58,189 - MPMX19_02820 0.85 +0.5 58,189 - MPMX19_02820 0.85 +0.1 58,189 - MPMX19_02820 0.85 +0.6 58,189 - MPMX19_02820 0.85 -1.4 58,189 - MPMX19_02820 0.85 +0.2 58,312 + -0.9 58,312 + +0.2 58,313 - +0.7 58,350 + -1.0 58,350 + -0.5 58,350 + -1.4 58,350 + -0.4 58,350 + +0.6 58,350 + -2.1 58,350 + -0.4 58,350 + -0.2 58,350 + -0.3 58,350 + +0.2 58,350 + -0.6 58,350 + -0.8 58,351 - -0.1 58,351 - +0.1 58,351 - -0.3 58,351 - -0.5 58,351 - -1.2 58,351 - -1.9 58,351 - -0.6 58,351 - -0.4 58,351 - -1.7 58,392 + -0.3 58,392 + -1.5 58,392 + -0.2 58,819 + MPMX19_02821 0.13 -0.1 58,819 + MPMX19_02821 0.13 -0.4 58,820 - MPMX19_02821 0.13 -0.2 58,914 + MPMX19_02821 0.16 +1.3 58,914 + MPMX19_02821 0.16 -0.0 58,914 + MPMX19_02821 0.16 +0.4 58,914 + MPMX19_02821 0.16 -1.4 58,914 + MPMX19_02821 0.16 -0.7 58,915 - MPMX19_02821 0.16 +0.5 58,915 - MPMX19_02821 0.16 -1.2 58,915 - MPMX19_02821 0.16 -1.0 58,915 - MPMX19_02821 0.16 +1.0 58,915 - MPMX19_02821 0.16 -0.6 58,915 - MPMX19_02821 0.16 +0.9 59,091 - MPMX19_02821 0.21 +1.0 59,091 - MPMX19_02821 0.21 -0.0
Or see this region's nucleotide sequence