Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01305 and MPMX19_01306 are separated by 124 nucleotides MPMX19_01306 and MPMX19_01307 are separated by 45 nucleotides MPMX19_01307 and MPMX19_01308 are separated by 66 nucleotides MPMX19_01308 and MPMX19_01309 are separated by 279 nucleotides
MPMX19_01305: MPMX19_01305 - Phosphoribosylglycinamide formyltransferase, at 1,362,446 to 1,363,111
_01305
MPMX19_01306: MPMX19_01306 - hypothetical protein, at 1,363,236 to 1,363,379
_01306
MPMX19_01307: MPMX19_01307 - Valine--tRNA ligase, at 1,363,425 to 1,366,073
_01307
MPMX19_01308: MPMX19_01308 - hypothetical protein, at 1,366,140 to 1,366,673
_01308
MPMX19_01309: MPMX19_01309 - Outer membrane efflux protein BepC, at 1,366,953 to 1,368,356
_01309
Position (kb)
1363
1364
1365
1366
1367 Strain fitness (log2 ratio)
-2
-1
0
1 at 1362.433 kb on + strand at 1362.433 kb on + strand at 1362.433 kb on + strand at 1362.433 kb on + strand at 1362.433 kb on + strand at 1362.434 kb on - strand at 1362.869 kb on + strand, within MPMX19_01305 at 1362.869 kb on + strand, within MPMX19_01305 at 1362.870 kb on - strand, within MPMX19_01305 at 1362.870 kb on - strand, within MPMX19_01305 at 1362.873 kb on + strand, within MPMX19_01305 at 1362.874 kb on - strand, within MPMX19_01305 at 1363.109 kb on + strand at 1363.110 kb on - strand at 1363.110 kb on - strand at 1363.110 kb on - strand at 1363.377 kb on + strand at 1363.377 kb on + strand at 1363.377 kb on + strand at 1363.378 kb on - strand at 1363.378 kb on - strand at 1366.091 kb on - strand at 1366.102 kb on - strand at 1366.102 kb on - strand at 1366.102 kb on - strand at 1366.892 kb on - strand at 1366.917 kb on - strand at 1366.917 kb on - strand at 1366.917 kb on - strand at 1366.920 kb on - strand at 1366.920 kb on - strand at 1366.920 kb on - strand at 1366.920 kb on - strand at 1366.999 kb on + strand at 1367.000 kb on - strand at 1367.018 kb on - strand at 1367.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 1,362,433 + -0.3 1,362,433 + -1.0 1,362,433 + -0.4 1,362,433 + +0.0 1,362,433 + -0.7 1,362,434 - -2.2 1,362,869 + MPMX19_01305 0.64 -0.3 1,362,869 + MPMX19_01305 0.64 -0.7 1,362,870 - MPMX19_01305 0.64 -1.7 1,362,870 - MPMX19_01305 0.64 +0.5 1,362,873 + MPMX19_01305 0.64 +0.0 1,362,874 - MPMX19_01305 0.64 -0.3 1,363,109 + -1.7 1,363,110 - -0.5 1,363,110 - -0.0 1,363,110 - +0.7 1,363,377 + -1.6 1,363,377 + -0.3 1,363,377 + -0.5 1,363,378 - -1.0 1,363,378 - -1.0 1,366,091 - -0.5 1,366,102 - -1.8 1,366,102 - -1.7 1,366,102 - -0.8 1,366,892 - -0.5 1,366,917 - -0.5 1,366,917 - -0.1 1,366,917 - -0.8 1,366,920 - +0.8 1,366,920 - -0.8 1,366,920 - -0.4 1,366,920 - -0.7 1,366,999 + +0.5 1,367,000 - -0.1 1,367,018 - -0.4 1,367,018 - +0.8
Or see this region's nucleotide sequence