Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00325

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00323 and MPMX19_00324 are separated by 46 nucleotidesMPMX19_00324 and MPMX19_00325 overlap by 4 nucleotidesMPMX19_00325 and MPMX19_00326 are separated by 41 nucleotidesMPMX19_00326 and MPMX19_00327 are separated by 101 nucleotidesMPMX19_00327 and MPMX19_00328 are separated by 8 nucleotides MPMX19_00323: MPMX19_00323 - 30S ribosomal protein S16, at 328,494 to 328,850 _00323 MPMX19_00324: MPMX19_00324 - Ribosome maturation factor RimM, at 328,897 to 329,496 _00324 MPMX19_00325: MPMX19_00325 - tRNA (guanine-N(1)-)-methyltransferase, at 329,493 to 330,302 _00325 MPMX19_00326: MPMX19_00326 - 50S ribosomal protein L19, at 330,344 to 330,739 _00326 MPMX19_00327: MPMX19_00327 - 50S ribosomal protein L34, at 330,841 to 330,975 _00327 MPMX19_00328: MPMX19_00328 - Ribonuclease P protein component, at 330,984 to 331,370 _00328 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1at 330.244 kb on + strandat 330.244 kb on + strandat 330.244 kb on + strandat 330.244 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
330,244 + -0.1
330,244 + -2.4
330,244 + -1.0
330,244 + -0.7

Or see this region's nucleotide sequence