Strain Fitness in Methylophilus sp. DMC18 around GFF156

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF155 and GFF156 are separated by 24 nucleotidesGFF156 and GFF157 are separated by 13 nucleotidesGFF157 and GFF158 are separated by 25 nucleotidesGFF158 and GFF159 overlap by 8 nucleotides GFF155 - FeMo cofactor biosynthesis protein NifB, at 154,893 to 156,452 GFF155 GFF156 - Ferredoxin-1, at 156,477 to 156,695 GFF156 GFF157 - Protein HesB, vegetative, at 156,709 to 157,101 GFF157 GFF158 - hypothetical protein, at 157,127 to 157,648 GFF158 GFF159 - hypothetical protein, at 157,641 to 158,501 GFF159 Position (kb) 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1at 155.477 kb on - strand, within GFF155at 155.536 kb on - strand, within GFF155at 155.536 kb on - strand, within GFF155at 155.661 kb on + strand, within GFF155at 155.661 kb on + strand, within GFF155at 155.705 kb on + strand, within GFF155at 155.745 kb on + strand, within GFF155at 155.931 kb on + strand, within GFF155at 156.040 kb on + strand, within GFF155at 156.040 kb on + strand, within GFF155at 156.120 kb on + strand, within GFF155at 156.208 kb on + strand, within GFF155at 156.208 kb on + strand, within GFF155at 156.209 kb on - strand, within GFF155at 156.209 kb on - strand, within GFF155at 156.209 kb on - strand, within GFF155at 156.215 kb on + strand, within GFF155at 156.215 kb on + strand, within GFF155at 156.216 kb on - strand, within GFF155at 156.216 kb on - strand, within GFF155at 156.216 kb on - strand, within GFF155at 156.301 kb on + strandat 156.319 kb on - strandat 156.319 kb on - strandat 156.401 kb on + strandat 156.441 kb on - strandat 156.457 kb on + strandat 156.458 kb on - strandat 156.462 kb on + strandat 156.463 kb on - strandat 156.463 kb on - strandat 156.483 kb on + strandat 156.484 kb on - strandat 156.594 kb on - strand, within GFF156at 156.646 kb on + strand, within GFF156at 156.646 kb on + strand, within GFF156at 156.662 kb on + strand, within GFF156at 156.663 kb on - strand, within GFF156at 156.667 kb on - strand, within GFF156at 156.668 kb on + strand, within GFF156at 156.669 kb on - strand, within GFF156at 156.676 kb on - strandat 156.693 kb on + strandat 156.744 kb on + strandat 156.800 kb on + strand, within GFF157at 156.801 kb on - strand, within GFF157at 156.801 kb on - strand, within GFF157at 156.801 kb on - strand, within GFF157at 156.801 kb on - strand, within GFF157at 156.893 kb on + strand, within GFF157at 156.894 kb on - strand, within GFF157at 156.927 kb on - strand, within GFF157at 156.927 kb on - strand, within GFF157at 156.951 kb on + strand, within GFF157at 156.952 kb on - strand, within GFF157at 156.952 kb on - strand, within GFF157at 156.994 kb on - strand, within GFF157at 157.087 kb on - strandat 157.181 kb on + strand, within GFF158at 157.182 kb on - strand, within GFF158at 157.228 kb on + strand, within GFF158at 157.235 kb on + strand, within GFF158at 157.236 kb on - strand, within GFF158at 157.284 kb on + strand, within GFF158at 157.328 kb on + strand, within GFF158at 157.379 kb on - strand, within GFF158at 157.482 kb on + strand, within GFF158at 157.483 kb on - strand, within GFF158at 157.499 kb on + strand, within GFF158at 157.500 kb on - strand, within GFF158at 157.500 kb on - strand, within GFF158at 157.500 kb on - strand, within GFF158at 157.500 kb on - strand, within GFF158at 157.602 kb on + strandat 157.603 kb on - strandat 157.658 kb on + strandat 157.658 kb on + strandat 157.658 kb on + strandat 157.658 kb on + strandat 157.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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155,477 - GFF155 0.37 -1.0
155,536 - GFF155 0.41 -0.8
155,536 - GFF155 0.41 +0.0
155,661 + GFF155 0.49 -0.3
155,661 + GFF155 0.49 +0.0
155,705 + GFF155 0.52 -2.2
155,745 + GFF155 0.55 +0.0
155,931 + GFF155 0.67 +0.2
156,040 + GFF155 0.74 -0.2
156,040 + GFF155 0.74 -0.8
156,120 + GFF155 0.79 +0.3
156,208 + GFF155 0.84 -1.3
156,208 + GFF155 0.84 -1.3
156,209 - GFF155 0.84 -1.0
156,209 - GFF155 0.84 -1.0
156,209 - GFF155 0.84 -0.6
156,215 + GFF155 0.85 -0.1
156,215 + GFF155 0.85 -1.5
156,216 - GFF155 0.85 -1.3
156,216 - GFF155 0.85 -0.5
156,216 - GFF155 0.85 +0.3
156,301 + -0.6
156,319 - -1.4
156,319 - -1.0
156,401 + -1.8
156,441 - +0.4
156,457 + -0.5
156,458 - -1.3
156,462 + -0.8
156,463 - +0.3
156,463 - +0.3
156,483 + +0.3
156,484 - -0.7
156,594 - GFF156 0.53 -0.1
156,646 + GFF156 0.77 -1.0
156,646 + GFF156 0.77 -0.2
156,662 + GFF156 0.84 -1.7
156,663 - GFF156 0.85 -2.0
156,667 - GFF156 0.87 +0.0
156,668 + GFF156 0.87 -0.8
156,669 - GFF156 0.88 -1.6
156,676 - -0.5
156,693 + +0.0
156,744 + -1.2
156,800 + GFF157 0.23 -1.2
156,801 - GFF157 0.23 -1.0
156,801 - GFF157 0.23 -1.0
156,801 - GFF157 0.23 -0.6
156,801 - GFF157 0.23 -0.6
156,893 + GFF157 0.47 +0.4
156,894 - GFF157 0.47 -1.0
156,927 - GFF157 0.55 -0.4
156,927 - GFF157 0.55 +0.5
156,951 + GFF157 0.62 -1.0
156,952 - GFF157 0.62 +0.4
156,952 - GFF157 0.62 -2.3
156,994 - GFF157 0.73 +0.4
157,087 - -0.8
157,181 + GFF158 0.10 -0.3
157,182 - GFF158 0.11 -0.3
157,228 + GFF158 0.19 +0.0
157,235 + GFF158 0.21 -2.6
157,236 - GFF158 0.21 +0.0
157,284 + GFF158 0.30 -1.1
157,328 + GFF158 0.39 -0.2
157,379 - GFF158 0.48 -2.2
157,482 + GFF158 0.68 -3.2
157,483 - GFF158 0.68 -1.0
157,499 + GFF158 0.71 +0.7
157,500 - GFF158 0.71 -1.6
157,500 - GFF158 0.71 -0.3
157,500 - GFF158 0.71 -0.6
157,500 - GFF158 0.71 -0.4
157,602 + -1.6
157,603 - -0.8
157,658 + -0.8
157,658 + -1.3
157,658 + +0.7
157,658 + -0.4
157,659 - -1.3

Or see this region's nucleotide sequence