Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06934

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06932 and MPMX19_06933 are separated by 137 nucleotidesMPMX19_06933 and MPMX19_06934 overlap by 4 nucleotidesMPMX19_06934 and MPMX19_06935 are separated by 31 nucleotides MPMX19_06932: MPMX19_06932 - hypothetical protein, at 205,218 to 205,895 _06932 MPMX19_06933: MPMX19_06933 - Manganese transport system ATP-binding protein MntB, at 206,033 to 206,803 _06933 MPMX19_06934: MPMX19_06934 - Manganese transport system membrane protein MntB, at 206,800 to 207,684 _06934 MPMX19_06935: MPMX19_06935 - putative periplasmic iron-binding protein, at 207,716 to 208,639 _06935 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1at 205.890 kb on + strandat 205.890 kb on + strandat 205.890 kb on + strandat 206.276 kb on + strand, within MPMX19_06933at 206.276 kb on + strand, within MPMX19_06933at 206.277 kb on - strand, within MPMX19_06933at 206.277 kb on - strand, within MPMX19_06933at 206.277 kb on - strand, within MPMX19_06933at 206.809 kb on + strandat 206.809 kb on + strandat 206.810 kb on - strandat 206.810 kb on - strandat 206.810 kb on - strandat 206.810 kb on - strandat 207.115 kb on + strand, within MPMX19_06934at 207.115 kb on + strand, within MPMX19_06934at 207.115 kb on + strand, within MPMX19_06934at 207.115 kb on + strand, within MPMX19_06934at 207.116 kb on - strand, within MPMX19_06934at 207.116 kb on - strand, within MPMX19_06934at 207.116 kb on - strand, within MPMX19_06934at 207.896 kb on + strand, within MPMX19_06935at 207.896 kb on + strand, within MPMX19_06935at 207.896 kb on + strand, within MPMX19_06935at 207.897 kb on - strand, within MPMX19_06935at 207.897 kb on - strand, within MPMX19_06935at 207.897 kb on - strand, within MPMX19_06935at 207.897 kb on - strand, within MPMX19_06935at 208.005 kb on - strand, within MPMX19_06935at 208.151 kb on + strand, within MPMX19_06935at 208.151 kb on + strand, within MPMX19_06935at 208.151 kb on + strand, within MPMX19_06935at 208.151 kb on + strand, within MPMX19_06935at 208.152 kb on - strand, within MPMX19_06935at 208.152 kb on - strand, within MPMX19_06935at 208.152 kb on - strand, within MPMX19_06935at 208.152 kb on - strand, within MPMX19_06935at 208.152 kb on - strand, within MPMX19_06935at 208.331 kb on + strand, within MPMX19_06935at 208.334 kb on + strand, within MPMX19_06935at 208.334 kb on + strand, within MPMX19_06935at 208.335 kb on - strand, within MPMX19_06935at 208.335 kb on - strand, within MPMX19_06935at 208.335 kb on - strand, within MPMX19_06935at 208.335 kb on - strand, within MPMX19_06935at 208.346 kb on + strand, within MPMX19_06935at 208.346 kb on + strand, within MPMX19_06935at 208.346 kb on + strand, within MPMX19_06935at 208.536 kb on - strand, within MPMX19_06935at 208.536 kb on - strand, within MPMX19_06935at 208.536 kb on - strand, within MPMX19_06935at 208.577 kb on + strandat 208.577 kb on + strandat 208.577 kb on + strandat 208.577 kb on + strandat 208.578 kb on - strandat 208.578 kb on - strandat 208.578 kb on - strandat 208.578 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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205,890 + -0.5
205,890 + -0.1
205,890 + +0.2
206,276 + MPMX19_06933 0.32 -1.3
206,276 + MPMX19_06933 0.32 -0.2
206,277 - MPMX19_06933 0.32 +0.0
206,277 - MPMX19_06933 0.32 +0.3
206,277 - MPMX19_06933 0.32 +1.5
206,809 + +1.0
206,809 + +0.2
206,810 - +0.1
206,810 - -0.1
206,810 - -0.8
206,810 - +0.9
207,115 + MPMX19_06934 0.36 -1.2
207,115 + MPMX19_06934 0.36 -0.4
207,115 + MPMX19_06934 0.36 -0.8
207,115 + MPMX19_06934 0.36 -1.0
207,116 - MPMX19_06934 0.36 -1.4
207,116 - MPMX19_06934 0.36 -0.5
207,116 - MPMX19_06934 0.36 -2.5
207,896 + MPMX19_06935 0.19 +0.6
207,896 + MPMX19_06935 0.19 +1.2
207,896 + MPMX19_06935 0.19 +1.0
207,897 - MPMX19_06935 0.20 +0.4
207,897 - MPMX19_06935 0.20 +0.8
207,897 - MPMX19_06935 0.20 -1.5
207,897 - MPMX19_06935 0.20 -0.9
208,005 - MPMX19_06935 0.31 -1.1
208,151 + MPMX19_06935 0.47 -2.1
208,151 + MPMX19_06935 0.47 +0.1
208,151 + MPMX19_06935 0.47 -1.1
208,151 + MPMX19_06935 0.47 +0.5
208,152 - MPMX19_06935 0.47 -0.1
208,152 - MPMX19_06935 0.47 -1.1
208,152 - MPMX19_06935 0.47 -0.1
208,152 - MPMX19_06935 0.47 +0.3
208,152 - MPMX19_06935 0.47 +0.2
208,331 + MPMX19_06935 0.67 -0.2
208,334 + MPMX19_06935 0.67 -1.5
208,334 + MPMX19_06935 0.67 -0.8
208,335 - MPMX19_06935 0.67 +0.1
208,335 - MPMX19_06935 0.67 -0.8
208,335 - MPMX19_06935 0.67 -0.4
208,335 - MPMX19_06935 0.67 -0.5
208,346 + MPMX19_06935 0.68 +1.0
208,346 + MPMX19_06935 0.68 -0.1
208,346 + MPMX19_06935 0.68 +0.0
208,536 - MPMX19_06935 0.89 +0.3
208,536 - MPMX19_06935 0.89 +0.0
208,536 - MPMX19_06935 0.89 +1.1
208,577 + -0.8
208,577 + -0.3
208,577 + -0.1
208,577 + -0.5
208,578 - +0.2
208,578 - +1.7
208,578 - +1.0
208,578 - -1.1

Or see this region's nucleotide sequence