Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06924 and MPMX19_06925 are separated by 278 nucleotides MPMX19_06925 and MPMX19_06926 are separated by 180 nucleotides MPMX19_06926 and MPMX19_06927 are separated by 26 nucleotides
MPMX19_06924: MPMX19_06924 - hypothetical protein, at 198,496 to 199,911
_06924
MPMX19_06925: MPMX19_06925 - Putative HMP/thiamine import ATP-binding protein YkoD, at 200,190 to 201,533
_06925
MPMX19_06926: MPMX19_06926 - hypothetical protein, at 201,714 to 202,046
_06926
MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705
_06927
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.811 kb on - strand at 199.811 kb on - strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.813 kb on - strand at 199.813 kb on - strand at 199.843 kb on - strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 200.063 kb on - strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.159 kb on + strand at 200.173 kb on + strand at 200.173 kb on + strand at 200.174 kb on - strand at 200.174 kb on - strand at 201.513 kb on + strand at 201.513 kb on + strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.577 kb on + strand at 201.578 kb on - strand at 201.578 kb on - strand at 201.585 kb on - strand at 201.589 kb on + strand at 201.589 kb on + strand at 201.592 kb on - strand at 201.592 kb on - strand at 201.899 kb on + strand, within MPMX19_06926 at 201.899 kb on + strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 202.021 kb on + strand at 202.021 kb on + strand at 202.021 kb on + strand at 202.022 kb on - strand at 202.022 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.218 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.404 kb on - strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 199,810 + +0.6 199,810 + +1.0 199,810 + -0.4 199,810 + -0.7 199,811 - +0.5 199,811 - -1.2 199,812 + +0.6 199,812 + -0.0 199,812 + -1.5 199,812 + +0.3 199,813 - -0.1 199,813 - +0.3 199,843 - +0.1 199,907 + -0.7 199,907 + +0.1 199,907 + -0.5 199,907 + -0.1 200,063 - -1.5 200,095 + -0.2 200,095 + -0.5 200,095 + -1.5 200,096 - +0.1 200,096 - +0.1 200,096 - +1.8 200,149 + -0.1 200,149 + +0.5 200,149 + -2.1 200,149 + -3.5 200,149 + -0.2 200,150 - -0.1 200,150 - -1.1 200,150 - -0.0 200,159 + -1.0 200,173 + -1.5 200,173 + -0.1 200,174 - +0.1 200,174 - -1.4 201,513 + +0.9 201,513 + -1.9 201,514 - -0.2 201,514 - -0.6 201,514 - +0.7 201,514 - -0.5 201,575 + -0.0 201,575 + -1.0 201,575 + -0.9 201,575 + +0.2 201,577 + -0.0 201,578 - +0.2 201,578 - -0.6 201,585 - -0.2 201,589 + +0.1 201,589 + -0.7 201,592 - -2.1 201,592 - +0.3 201,899 + MPMX19_06926 0.56 -0.5 201,899 + MPMX19_06926 0.56 -0.7 201,900 - MPMX19_06926 0.56 -0.0 201,900 - MPMX19_06926 0.56 -2.0 201,958 + MPMX19_06926 0.73 +2.5 201,958 + MPMX19_06926 0.73 +1.5 201,958 + MPMX19_06926 0.73 -1.1 201,959 - MPMX19_06926 0.74 -0.1 201,959 - MPMX19_06926 0.74 -1.9 201,959 - MPMX19_06926 0.74 -1.0 201,959 - MPMX19_06926 0.74 -0.5 201,959 - MPMX19_06926 0.74 -2.2 202,021 + -0.3 202,021 + +0.9 202,021 + -0.2 202,022 - +0.4 202,022 - +0.2 202,075 - +0.5 202,075 - -0.0 202,075 - -0.5 202,218 + MPMX19_06927 0.23 -0.6 202,230 + MPMX19_06927 0.25 +0.6 202,230 + MPMX19_06927 0.25 -0.2 202,230 + MPMX19_06927 0.25 +1.0 202,231 - MPMX19_06927 0.25 -0.4 202,231 - MPMX19_06927 0.25 -0.7 202,231 - MPMX19_06927 0.25 -0.8 202,272 + MPMX19_06927 0.31 +0.3 202,272 + MPMX19_06927 0.31 -1.1 202,273 - MPMX19_06927 0.32 +0.1 202,273 - MPMX19_06927 0.32 -0.5 202,344 + MPMX19_06927 0.43 -1.9 202,344 + MPMX19_06927 0.43 +0.4 202,344 + MPMX19_06927 0.43 -0.2 202,344 + MPMX19_06927 0.43 -0.4 202,345 - MPMX19_06927 0.43 +0.9 202,345 - MPMX19_06927 0.43 -0.1 202,404 - MPMX19_06927 0.52 -1.5 202,416 + MPMX19_06927 0.54 -0.3 202,416 + MPMX19_06927 0.54 -1.0 202,416 + MPMX19_06927 0.54 -0.3 202,416 + MPMX19_06927 0.54 +0.0 202,416 + MPMX19_06927 0.54 -1.0 202,417 - MPMX19_06927 0.54 -0.2 202,417 - MPMX19_06927 0.54 -0.4 202,417 - MPMX19_06927 0.54 -1.1
Or see this region's nucleotide sequence