Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06278

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06277 and MPMX19_06278 overlap by 1 nucleotidesMPMX19_06278 and MPMX19_06279 overlap by 11 nucleotides MPMX19_06277: MPMX19_06277 - hypothetical protein, at 25,389 to 26,615 _06277 MPMX19_06278: MPMX19_06278 - S-sulfocysteine synthase, at 26,615 to 27,700 _06278 MPMX19_06279: MPMX19_06279 - L-threonine kinase, at 27,690 to 28,655 _06279 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.689 kb on + strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 25.690 kb on - strand, within MPMX19_06277at 26.024 kb on - strand, within MPMX19_06277at 26.026 kb on + strand, within MPMX19_06277at 26.026 kb on + strand, within MPMX19_06277at 26.027 kb on - strand, within MPMX19_06277at 26.027 kb on - strand, within MPMX19_06277at 26.027 kb on - strand, within MPMX19_06277at 26.344 kb on - strand, within MPMX19_06277at 26.344 kb on - strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.365 kb on + strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.366 kb on - strand, within MPMX19_06277at 26.368 kb on + strand, within MPMX19_06277at 26.369 kb on - strand, within MPMX19_06277at 26.369 kb on - strand, within MPMX19_06277at 26.369 kb on - strand, within MPMX19_06277at 26.369 kb on - strand, within MPMX19_06277at 26.384 kb on + strand, within MPMX19_06277at 26.384 kb on + strand, within MPMX19_06277at 26.384 kb on + strand, within MPMX19_06277at 26.384 kb on + strand, within MPMX19_06277at 26.385 kb on - strand, within MPMX19_06277at 26.385 kb on - strand, within MPMX19_06277at 26.454 kb on - strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.491 kb on + strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.492 kb on - strand, within MPMX19_06277at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.799 kb on + strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.800 kb on - strand, within MPMX19_06278at 26.814 kb on + strand, within MPMX19_06278at 26.814 kb on + strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.815 kb on - strand, within MPMX19_06278at 26.892 kb on + strand, within MPMX19_06278at 26.892 kb on + strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.893 kb on - strand, within MPMX19_06278at 26.919 kb on + strand, within MPMX19_06278at 26.919 kb on + strand, within MPMX19_06278at 26.920 kb on - strand, within MPMX19_06278at 26.920 kb on - strand, within MPMX19_06278at 26.920 kb on - strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.234 kb on + strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.235 kb on - strand, within MPMX19_06278at 27.261 kb on + strand, within MPMX19_06278at 27.349 kb on - strand, within MPMX19_06278at 27.349 kb on - strand, within MPMX19_06278at 27.349 kb on - strand, within MPMX19_06278at 27.445 kb on - strand, within MPMX19_06278at 27.445 kb on - strand, within MPMX19_06278at 27.722 kb on + strandat 28.039 kb on + strand, within MPMX19_06279at 28.039 kb on + strand, within MPMX19_06279at 28.040 kb on - strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.479 kb on + strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.480 kb on - strand, within MPMX19_06279at 28.570 kb on - strandat 28.570 kb on - strandat 28.570 kb on - strandat 28.570 kb on - strandat 28.687 kb on + strandat 28.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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25,689 + MPMX19_06277 0.24 -2.3
25,689 + MPMX19_06277 0.24 -0.4
25,689 + MPMX19_06277 0.24 -1.4
25,689 + MPMX19_06277 0.24 +0.1
25,689 + MPMX19_06277 0.24 -2.5
25,689 + MPMX19_06277 0.24 -0.6
25,690 - MPMX19_06277 0.25 -0.5
25,690 - MPMX19_06277 0.25 -0.6
25,690 - MPMX19_06277 0.25 -1.4
25,690 - MPMX19_06277 0.25 -0.6
25,690 - MPMX19_06277 0.25 -0.4
25,690 - MPMX19_06277 0.25 -0.4
25,690 - MPMX19_06277 0.25 -0.4
26,024 - MPMX19_06277 0.52 -1.2
26,026 + MPMX19_06277 0.52 -2.2
26,026 + MPMX19_06277 0.52 -0.5
26,027 - MPMX19_06277 0.52 -1.7
26,027 - MPMX19_06277 0.52 -1.4
26,027 - MPMX19_06277 0.52 -1.1
26,344 - MPMX19_06277 0.78 -2.1
26,344 - MPMX19_06277 0.78 -1.6
26,365 + MPMX19_06277 0.80 -1.4
26,365 + MPMX19_06277 0.80 +0.1
26,365 + MPMX19_06277 0.80 -1.2
26,365 + MPMX19_06277 0.80 -2.0
26,365 + MPMX19_06277 0.80 -1.4
26,365 + MPMX19_06277 0.80 -0.8
26,365 + MPMX19_06277 0.80 +0.2
26,365 + MPMX19_06277 0.80 -1.9
26,365 + MPMX19_06277 0.80 -1.1
26,365 + MPMX19_06277 0.80 -2.6
26,365 + MPMX19_06277 0.80 -1.0
26,365 + MPMX19_06277 0.80 -2.8
26,366 - MPMX19_06277 0.80 -0.9
26,366 - MPMX19_06277 0.80 -0.9
26,366 - MPMX19_06277 0.80 -0.5
26,366 - MPMX19_06277 0.80 -1.5
26,366 - MPMX19_06277 0.80 -2.9
26,366 - MPMX19_06277 0.80 +0.6
26,366 - MPMX19_06277 0.80 -2.2
26,366 - MPMX19_06277 0.80 -1.5
26,366 - MPMX19_06277 0.80 -1.7
26,368 + MPMX19_06277 0.80 -1.2
26,369 - MPMX19_06277 0.80 -2.1
26,369 - MPMX19_06277 0.80 -2.5
26,369 - MPMX19_06277 0.80 +0.4
26,369 - MPMX19_06277 0.80 -2.4
26,384 + MPMX19_06277 0.81 -2.1
26,384 + MPMX19_06277 0.81 -0.7
26,384 + MPMX19_06277 0.81 -0.9
26,384 + MPMX19_06277 0.81 -1.4
26,385 - MPMX19_06277 0.81 -3.2
26,385 - MPMX19_06277 0.81 -2.1
26,454 - MPMX19_06277 0.87 -0.7
26,491 + MPMX19_06277 0.90 -1.8
26,491 + MPMX19_06277 0.90 -1.5
26,491 + MPMX19_06277 0.90 -1.2
26,491 + MPMX19_06277 0.90 -1.3
26,491 + MPMX19_06277 0.90 -0.5
26,491 + MPMX19_06277 0.90 -1.4
26,491 + MPMX19_06277 0.90 -1.6
26,491 + MPMX19_06277 0.90 -1.5
26,491 + MPMX19_06277 0.90 -1.1
26,491 + MPMX19_06277 0.90 -2.2
26,492 - MPMX19_06277 0.90 -2.1
26,492 - MPMX19_06277 0.90 -0.5
26,492 - MPMX19_06277 0.90 -0.6
26,492 - MPMX19_06277 0.90 -0.9
26,492 - MPMX19_06277 0.90 -0.0
26,492 - MPMX19_06277 0.90 -1.7
26,492 - MPMX19_06277 0.90 +0.2
26,492 - MPMX19_06277 0.90 +1.1
26,799 + MPMX19_06278 0.17 -0.6
26,799 + MPMX19_06278 0.17 -1.6
26,799 + MPMX19_06278 0.17 -1.4
26,799 + MPMX19_06278 0.17 -0.7
26,799 + MPMX19_06278 0.17 -0.6
26,799 + MPMX19_06278 0.17 -0.6
26,799 + MPMX19_06278 0.17 -1.7
26,799 + MPMX19_06278 0.17 -1.8
26,799 + MPMX19_06278 0.17 +0.6
26,799 + MPMX19_06278 0.17 -0.7
26,799 + MPMX19_06278 0.17 -0.0
26,799 + MPMX19_06278 0.17 +1.6
26,799 + MPMX19_06278 0.17 -1.1
26,800 - MPMX19_06278 0.17 -1.1
26,800 - MPMX19_06278 0.17 -1.3
26,800 - MPMX19_06278 0.17 +0.6
26,800 - MPMX19_06278 0.17 -0.9
26,800 - MPMX19_06278 0.17 -0.9
26,800 - MPMX19_06278 0.17 -1.4
26,800 - MPMX19_06278 0.17 -0.5
26,800 - MPMX19_06278 0.17 -0.4
26,800 - MPMX19_06278 0.17 -1.4
26,814 + MPMX19_06278 0.18 +0.2
26,814 + MPMX19_06278 0.18 -0.3
26,815 - MPMX19_06278 0.18 -0.4
26,815 - MPMX19_06278 0.18 -0.7
26,815 - MPMX19_06278 0.18 +0.2
26,815 - MPMX19_06278 0.18 -1.5
26,892 + MPMX19_06278 0.26 -0.8
26,892 + MPMX19_06278 0.26 -0.7
26,893 - MPMX19_06278 0.26 -0.0
26,893 - MPMX19_06278 0.26 +0.1
26,893 - MPMX19_06278 0.26 -0.7
26,893 - MPMX19_06278 0.26 -0.1
26,893 - MPMX19_06278 0.26 -1.8
26,893 - MPMX19_06278 0.26 -0.9
26,893 - MPMX19_06278 0.26 -0.9
26,919 + MPMX19_06278 0.28 -1.2
26,919 + MPMX19_06278 0.28 +0.2
26,920 - MPMX19_06278 0.28 -0.4
26,920 - MPMX19_06278 0.28 +0.1
26,920 - MPMX19_06278 0.28 -0.4
27,234 + MPMX19_06278 0.57 -1.3
27,234 + MPMX19_06278 0.57 +0.3
27,234 + MPMX19_06278 0.57 +0.4
27,234 + MPMX19_06278 0.57 +0.2
27,234 + MPMX19_06278 0.57 -1.3
27,234 + MPMX19_06278 0.57 -1.3
27,234 + MPMX19_06278 0.57 -1.9
27,234 + MPMX19_06278 0.57 -0.5
27,235 - MPMX19_06278 0.57 -1.8
27,235 - MPMX19_06278 0.57 -1.1
27,235 - MPMX19_06278 0.57 -0.3
27,235 - MPMX19_06278 0.57 +1.6
27,235 - MPMX19_06278 0.57 -1.4
27,261 + MPMX19_06278 0.59 -0.1
27,349 - MPMX19_06278 0.68 +0.1
27,349 - MPMX19_06278 0.68 -1.9
27,349 - MPMX19_06278 0.68 -0.7
27,445 - MPMX19_06278 0.76 -0.2
27,445 - MPMX19_06278 0.76 -0.9
27,722 + +0.4
28,039 + MPMX19_06279 0.36 -0.9
28,039 + MPMX19_06279 0.36 +0.1
28,040 - MPMX19_06279 0.36 -0.7
28,479 + MPMX19_06279 0.82 +0.1
28,479 + MPMX19_06279 0.82 -0.9
28,479 + MPMX19_06279 0.82 +0.3
28,479 + MPMX19_06279 0.82 +0.1
28,479 + MPMX19_06279 0.82 +1.4
28,479 + MPMX19_06279 0.82 -1.7
28,479 + MPMX19_06279 0.82 -0.7
28,479 + MPMX19_06279 0.82 -1.9
28,479 + MPMX19_06279 0.82 -1.9
28,479 + MPMX19_06279 0.82 +0.9
28,479 + MPMX19_06279 0.82 -2.8
28,479 + MPMX19_06279 0.82 -0.1
28,479 + MPMX19_06279 0.82 -1.2
28,479 + MPMX19_06279 0.82 -2.7
28,479 + MPMX19_06279 0.82 -0.8
28,479 + MPMX19_06279 0.82 -0.0
28,479 + MPMX19_06279 0.82 -0.7
28,480 - MPMX19_06279 0.82 -2.3
28,480 - MPMX19_06279 0.82 +0.7
28,480 - MPMX19_06279 0.82 -1.4
28,480 - MPMX19_06279 0.82 -0.4
28,480 - MPMX19_06279 0.82 +0.7
28,480 - MPMX19_06279 0.82 +0.8
28,480 - MPMX19_06279 0.82 -0.7
28,480 - MPMX19_06279 0.82 +0.2
28,570 - -0.7
28,570 - +0.1
28,570 - -0.1
28,570 - +0.4
28,687 + -1.3
28,700 + -0.4

Or see this region's nucleotide sequence