Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05004 and MPMX19_05005 are separated by 67 nucleotides MPMX19_05005 and MPMX19_05006 are separated by 27 nucleotides MPMX19_05006 and MPMX19_05007 are separated by 271 nucleotides
MPMX19_05004: MPMX19_05004 - Glutathionyl-hydroquinone reductase YqjG, at 486,484 to 487,443
_05004
MPMX19_05005: MPMX19_05005 - hypothetical protein, at 487,511 to 487,888
_05005
MPMX19_05006: MPMX19_05006 - hypothetical protein, at 487,916 to 488,290
_05006
MPMX19_05007: MPMX19_05007 - hypothetical protein, at 488,562 to 490,556
_05007
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.958 kb on + strand, within MPMX19_05004 at 486.959 kb on - strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.006 kb on + strand, within MPMX19_05004 at 487.007 kb on - strand, within MPMX19_05004 at 487.007 kb on - strand, within MPMX19_05004 at 487.007 kb on - strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.030 kb on + strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.031 kb on - strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.063 kb on + strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.064 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.205 kb on - strand, within MPMX19_05004 at 487.247 kb on - strand, within MPMX19_05004 at 487.247 kb on - strand, within MPMX19_05004 at 487.264 kb on + strand, within MPMX19_05004 at 487.265 kb on - strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.279 kb on + strand, within MPMX19_05004 at 487.280 kb on - strand, within MPMX19_05004 at 487.280 kb on - strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.333 kb on + strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.334 kb on - strand, within MPMX19_05004 at 487.336 kb on + strand, within MPMX19_05004 at 487.337 kb on - strand, within MPMX19_05004 at 487.337 kb on - strand, within MPMX19_05004 at 487.337 kb on - strand, within MPMX19_05004 at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.516 kb on + strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.517 kb on - strand at 487.652 kb on + strand, within MPMX19_05005 at 487.727 kb on + strand, within MPMX19_05005 at 487.728 kb on - strand, within MPMX19_05005 at 487.728 kb on - strand, within MPMX19_05005 at 487.728 kb on - strand, within MPMX19_05005 at 487.763 kb on + strand, within MPMX19_05005 at 487.763 kb on + strand, within MPMX19_05005 at 487.764 kb on - strand, within MPMX19_05005 at 487.764 kb on - strand, within MPMX19_05005 at 487.772 kb on + strand, within MPMX19_05005 at 487.773 kb on - strand, within MPMX19_05005 at 487.773 kb on - strand, within MPMX19_05005 at 487.773 kb on - strand, within MPMX19_05005 at 487.799 kb on + strand, within MPMX19_05005 at 487.799 kb on + strand, within MPMX19_05005 at 487.800 kb on - strand, within MPMX19_05005 at 487.898 kb on + strand at 487.898 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.259 kb on + strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.260 kb on - strand at 488.296 kb on + strand at 488.296 kb on + strand at 488.296 kb on + strand at 488.296 kb on + strand at 488.297 kb on - strand at 488.330 kb on + strand at 488.330 kb on + strand at 488.331 kb on - strand at 488.356 kb on + strand at 488.357 kb on - strand at 488.357 kb on - strand at 488.357 kb on - strand at 488.510 kb on - strand at 488.510 kb on - strand at 488.922 kb on + strand, within MPMX19_05007 at 488.922 kb on + strand, within MPMX19_05007 at 488.923 kb on - strand, within MPMX19_05007 at 488.923 kb on - strand, within MPMX19_05007 at 488.994 kb on + strand, within MPMX19_05007 at 488.994 kb on + strand, within MPMX19_05007 at 488.995 kb on - strand, within MPMX19_05007 at 488.995 kb on - strand, within MPMX19_05007 at 488.995 kb on - strand, within MPMX19_05007 at 488.995 kb on - strand, within MPMX19_05007
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 486,958 + MPMX19_05004 0.49 -0.6 486,959 - MPMX19_05004 0.49 -1.7 487,006 + MPMX19_05004 0.54 -0.1 487,006 + MPMX19_05004 0.54 +1.0 487,006 + MPMX19_05004 0.54 -0.0 487,006 + MPMX19_05004 0.54 +0.9 487,006 + MPMX19_05004 0.54 -0.6 487,006 + MPMX19_05004 0.54 +1.3 487,006 + MPMX19_05004 0.54 -0.9 487,007 - MPMX19_05004 0.54 +1.4 487,007 - MPMX19_05004 0.54 +1.2 487,007 - MPMX19_05004 0.54 +0.7 487,030 + MPMX19_05004 0.57 -1.8 487,030 + MPMX19_05004 0.57 +0.8 487,030 + MPMX19_05004 0.57 -1.4 487,030 + MPMX19_05004 0.57 -0.4 487,030 + MPMX19_05004 0.57 +1.6 487,030 + MPMX19_05004 0.57 -1.0 487,030 + MPMX19_05004 0.57 -1.0 487,030 + MPMX19_05004 0.57 -0.1 487,031 - MPMX19_05004 0.57 +0.7 487,031 - MPMX19_05004 0.57 +0.6 487,031 - MPMX19_05004 0.57 -0.5 487,031 - MPMX19_05004 0.57 -0.6 487,031 - MPMX19_05004 0.57 +0.7 487,031 - MPMX19_05004 0.57 -1.6 487,031 - MPMX19_05004 0.57 +0.3 487,063 + MPMX19_05004 0.60 +0.8 487,063 + MPMX19_05004 0.60 +0.1 487,063 + MPMX19_05004 0.60 -0.0 487,063 + MPMX19_05004 0.60 -0.5 487,063 + MPMX19_05004 0.60 -1.0 487,063 + MPMX19_05004 0.60 -1.9 487,063 + MPMX19_05004 0.60 -1.2 487,063 + MPMX19_05004 0.60 -0.8 487,063 + MPMX19_05004 0.60 -1.8 487,063 + MPMX19_05004 0.60 -0.1 487,063 + MPMX19_05004 0.60 -0.9 487,063 + MPMX19_05004 0.60 +1.8 487,063 + MPMX19_05004 0.60 -0.0 487,063 + MPMX19_05004 0.60 -0.3 487,063 + MPMX19_05004 0.60 +0.6 487,063 + MPMX19_05004 0.60 -1.4 487,064 - MPMX19_05004 0.60 +0.3 487,064 - MPMX19_05004 0.60 -2.1 487,064 - MPMX19_05004 0.60 -0.5 487,064 - MPMX19_05004 0.60 +0.0 487,064 - MPMX19_05004 0.60 -0.0 487,064 - MPMX19_05004 0.60 -0.9 487,064 - MPMX19_05004 0.60 -0.6 487,064 - MPMX19_05004 0.60 +1.3 487,064 - MPMX19_05004 0.60 +0.3 487,064 - MPMX19_05004 0.60 +0.6 487,064 - MPMX19_05004 0.60 -0.9 487,064 - MPMX19_05004 0.60 +1.6 487,064 - MPMX19_05004 0.60 -0.7 487,205 - MPMX19_05004 0.75 -0.3 487,205 - MPMX19_05004 0.75 +0.6 487,205 - MPMX19_05004 0.75 +0.6 487,205 - MPMX19_05004 0.75 +0.0 487,205 - MPMX19_05004 0.75 -0.0 487,205 - MPMX19_05004 0.75 +0.2 487,205 - MPMX19_05004 0.75 +0.2 487,205 - MPMX19_05004 0.75 +0.0 487,247 - MPMX19_05004 0.79 +0.7 487,247 - MPMX19_05004 0.79 -1.3 487,264 + MPMX19_05004 0.81 -0.1 487,265 - MPMX19_05004 0.81 -0.3 487,279 + MPMX19_05004 0.83 +0.6 487,279 + MPMX19_05004 0.83 -0.9 487,279 + MPMX19_05004 0.83 +0.7 487,279 + MPMX19_05004 0.83 -0.3 487,279 + MPMX19_05004 0.83 -0.0 487,280 - MPMX19_05004 0.83 +0.9 487,280 - MPMX19_05004 0.83 +0.4 487,333 + MPMX19_05004 0.88 -2.1 487,333 + MPMX19_05004 0.88 -0.4 487,333 + MPMX19_05004 0.88 -0.4 487,333 + MPMX19_05004 0.88 -1.0 487,333 + MPMX19_05004 0.88 -0.0 487,333 + MPMX19_05004 0.88 +1.0 487,333 + MPMX19_05004 0.88 +0.4 487,333 + MPMX19_05004 0.88 -0.8 487,333 + MPMX19_05004 0.88 +0.1 487,334 - MPMX19_05004 0.89 +1.3 487,334 - MPMX19_05004 0.89 -0.2 487,334 - MPMX19_05004 0.89 -0.0 487,334 - MPMX19_05004 0.89 -1.1 487,334 - MPMX19_05004 0.89 -0.4 487,334 - MPMX19_05004 0.89 -0.2 487,334 - MPMX19_05004 0.89 -1.6 487,334 - MPMX19_05004 0.89 -0.7 487,334 - MPMX19_05004 0.89 -0.2 487,336 + MPMX19_05004 0.89 +0.7 487,337 - MPMX19_05004 0.89 -0.4 487,337 - MPMX19_05004 0.89 -0.3 487,337 - MPMX19_05004 0.89 -0.8 487,516 + -2.0 487,516 + -1.0 487,516 + +0.8 487,516 + -0.2 487,516 + +0.2 487,516 + +0.3 487,516 + +0.0 487,516 + -2.1 487,516 + -0.9 487,516 + -0.2 487,517 - -0.4 487,517 - +1.0 487,517 - -0.8 487,517 - -1.3 487,517 - +1.2 487,517 - -1.0 487,517 - -1.1 487,517 - -0.5 487,517 - -1.6 487,652 + MPMX19_05005 0.37 +1.3 487,727 + MPMX19_05005 0.57 +0.8 487,728 - MPMX19_05005 0.57 +0.1 487,728 - MPMX19_05005 0.57 +0.1 487,728 - MPMX19_05005 0.57 -0.9 487,763 + MPMX19_05005 0.67 +0.8 487,763 + MPMX19_05005 0.67 +1.4 487,764 - MPMX19_05005 0.67 +0.1 487,764 - MPMX19_05005 0.67 +0.5 487,772 + MPMX19_05005 0.69 +0.4 487,773 - MPMX19_05005 0.69 -0.2 487,773 - MPMX19_05005 0.69 -0.3 487,773 - MPMX19_05005 0.69 -2.4 487,799 + MPMX19_05005 0.76 -0.4 487,799 + MPMX19_05005 0.76 +0.3 487,800 - MPMX19_05005 0.76 -0.9 487,898 + +0.2 487,898 + -1.1 487,926 + -0.9 487,926 + -2.0 487,926 + -0.0 487,926 + -0.8 487,926 + -1.0 487,926 + -1.9 487,926 + -0.2 487,926 + -0.7 487,926 + +0.1 487,926 + +0.7 487,927 - +0.4 487,927 - -0.6 487,927 - +0.4 487,927 - -1.1 487,927 - -0.3 487,927 - +1.6 487,927 - +0.3 487,927 - -0.8 488,259 + +0.1 488,259 + +0.6 488,259 + +0.6 488,259 + -0.4 488,259 + +0.6 488,259 + -0.4 488,259 + -0.3 488,259 + -0.8 488,259 + +0.8 488,259 + -0.0 488,259 + -0.2 488,259 + -0.0 488,259 + -0.6 488,259 + -1.6 488,259 + +0.2 488,259 + +0.2 488,259 + -0.4 488,259 + -0.5 488,259 + -0.2 488,259 + -1.2 488,259 + -1.0 488,259 + -0.3 488,259 + +0.1 488,259 + -1.6 488,260 - -0.1 488,260 - -0.3 488,260 - +0.8 488,260 - -1.2 488,260 - -1.0 488,260 - -0.9 488,260 - +1.4 488,260 - +0.9 488,260 - +0.2 488,260 - -0.2 488,260 - +0.0 488,260 - +0.0 488,296 + -0.6 488,296 + +1.6 488,296 + -0.3 488,296 + +0.6 488,297 - -0.3 488,330 + -0.8 488,330 + -0.0 488,331 - -0.6 488,356 + +0.1 488,357 - -0.3 488,357 - +0.2 488,357 - +0.6 488,510 - +0.1 488,510 - -0.0 488,922 + MPMX19_05007 0.18 -0.4 488,922 + MPMX19_05007 0.18 +0.4 488,923 - MPMX19_05007 0.18 -0.4 488,923 - MPMX19_05007 0.18 -1.0 488,994 + MPMX19_05007 0.22 +1.4 488,994 + MPMX19_05007 0.22 -1.6 488,995 - MPMX19_05007 0.22 +0.4 488,995 - MPMX19_05007 0.22 -1.3 488,995 - MPMX19_05007 0.22 -0.5 488,995 - MPMX19_05007 0.22 -0.8
Or see this region's nucleotide sequence