Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04637 and MPMX19_04638 are separated by 10 nucleotides MPMX19_04638 and MPMX19_04639 are separated by 342 nucleotides
MPMX19_04637: MPMX19_04637 - hypothetical protein, at 15,548 to 17,251
_04637
MPMX19_04638: MPMX19_04638 - D-inositol-3-phosphate glycosyltransferase, at 17,262 to 18,464
_04638
MPMX19_04639: MPMX19_04639 - hypothetical protein, at 18,807 to 21,578
_04639
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.290 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.328 kb on + strand, within MPMX19_04637 at 16.329 kb on - strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.595 kb on + strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.596 kb on - strand, within MPMX19_04637 at 16.609 kb on - strand, within MPMX19_04637 at 16.609 kb on - strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.640 kb on + strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.641 kb on - strand, within MPMX19_04637 at 16.677 kb on + strand, within MPMX19_04637 at 16.677 kb on + strand, within MPMX19_04637 at 16.677 kb on + strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.678 kb on - strand, within MPMX19_04637 at 16.970 kb on + strand, within MPMX19_04637 at 17.341 kb on + strand at 17.341 kb on + strand at 17.341 kb on + strand at 17.341 kb on + strand at 17.342 kb on - strand at 17.342 kb on - strand at 17.342 kb on - strand at 17.590 kb on + strand, within MPMX19_04638 at 17.591 kb on - strand, within MPMX19_04638 at 18.031 kb on + strand, within MPMX19_04638 at 18.031 kb on + strand, within MPMX19_04638 at 18.031 kb on + strand, within MPMX19_04638 at 18.032 kb on - strand, within MPMX19_04638 at 18.032 kb on - strand, within MPMX19_04638 at 18.044 kb on - strand, within MPMX19_04638 at 18.431 kb on + strand at 18.431 kb on + strand at 18.432 kb on - strand at 18.432 kb on - strand at 18.432 kb on - strand at 18.560 kb on + strand at 18.561 kb on - strand at 18.583 kb on - strand at 18.780 kb on - strand at 18.793 kb on + strand at 18.957 kb on + strand at 19.011 kb on + strand at 19.012 kb on - strand at 19.012 kb on - strand at 19.012 kb on - strand at 19.012 kb on - strand at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.113 kb on + strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.114 kb on - strand, within MPMX19_04639 at 19.167 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.395 kb on + strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.396 kb on - strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639 at 19.449 kb on + strand, within MPMX19_04639
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 16,290 + MPMX19_04637 0.44 +0.4 16,328 + MPMX19_04637 0.46 +0.0 16,328 + MPMX19_04637 0.46 -2.0 16,328 + MPMX19_04637 0.46 +0.2 16,329 - MPMX19_04637 0.46 +0.5 16,595 + MPMX19_04637 0.61 -0.6 16,595 + MPMX19_04637 0.61 -0.4 16,595 + MPMX19_04637 0.61 +0.4 16,595 + MPMX19_04637 0.61 -0.5 16,595 + MPMX19_04637 0.61 +0.3 16,595 + MPMX19_04637 0.61 +0.4 16,595 + MPMX19_04637 0.61 -0.8 16,595 + MPMX19_04637 0.61 +0.4 16,595 + MPMX19_04637 0.61 -0.7 16,595 + MPMX19_04637 0.61 -0.9 16,596 - MPMX19_04637 0.62 +1.3 16,596 - MPMX19_04637 0.62 -0.8 16,596 - MPMX19_04637 0.62 +0.9 16,596 - MPMX19_04637 0.62 +0.1 16,609 - MPMX19_04637 0.62 +1.2 16,609 - MPMX19_04637 0.62 -0.3 16,640 + MPMX19_04637 0.64 -1.0 16,640 + MPMX19_04637 0.64 +0.5 16,640 + MPMX19_04637 0.64 +0.1 16,640 + MPMX19_04637 0.64 -0.5 16,640 + MPMX19_04637 0.64 -1.4 16,641 - MPMX19_04637 0.64 +0.4 16,641 - MPMX19_04637 0.64 -1.1 16,641 - MPMX19_04637 0.64 -0.1 16,641 - MPMX19_04637 0.64 -0.2 16,677 + MPMX19_04637 0.66 -0.2 16,677 + MPMX19_04637 0.66 -1.1 16,677 + MPMX19_04637 0.66 -0.5 16,678 - MPMX19_04637 0.66 +0.0 16,678 - MPMX19_04637 0.66 -0.1 16,678 - MPMX19_04637 0.66 -2.1 16,678 - MPMX19_04637 0.66 -0.3 16,678 - MPMX19_04637 0.66 -1.5 16,970 + MPMX19_04637 0.83 -0.3 17,341 + -1.1 17,341 + +0.7 17,341 + -0.1 17,341 + -0.5 17,342 - -0.2 17,342 - -0.3 17,342 - +0.7 17,590 + MPMX19_04638 0.27 -1.5 17,591 - MPMX19_04638 0.27 +1.5 18,031 + MPMX19_04638 0.64 +1.8 18,031 + MPMX19_04638 0.64 -0.4 18,031 + MPMX19_04638 0.64 -1.8 18,032 - MPMX19_04638 0.64 -1.5 18,032 - MPMX19_04638 0.64 -2.0 18,044 - MPMX19_04638 0.65 -1.0 18,431 + -0.6 18,431 + +0.6 18,432 - -0.8 18,432 - -1.1 18,432 - +1.0 18,560 + -1.1 18,561 - +1.3 18,583 - -0.1 18,780 - -1.1 18,793 + +0.2 18,957 + -1.8 19,011 + +0.3 19,012 - -0.1 19,012 - +0.0 19,012 - -0.8 19,012 - +1.8 19,113 + MPMX19_04639 0.11 -0.2 19,113 + MPMX19_04639 0.11 +0.6 19,113 + MPMX19_04639 0.11 -0.6 19,113 + MPMX19_04639 0.11 -0.7 19,113 + MPMX19_04639 0.11 +0.1 19,113 + MPMX19_04639 0.11 +0.5 19,113 + MPMX19_04639 0.11 -0.8 19,113 + MPMX19_04639 0.11 -0.6 19,113 + MPMX19_04639 0.11 -1.1 19,113 + MPMX19_04639 0.11 +0.7 19,113 + MPMX19_04639 0.11 +0.1 19,114 - MPMX19_04639 0.11 +0.1 19,114 - MPMX19_04639 0.11 +0.8 19,114 - MPMX19_04639 0.11 -1.5 19,114 - MPMX19_04639 0.11 -0.2 19,114 - MPMX19_04639 0.11 -1.0 19,114 - MPMX19_04639 0.11 -2.3 19,114 - MPMX19_04639 0.11 +1.0 19,114 - MPMX19_04639 0.11 +0.5 19,114 - MPMX19_04639 0.11 +1.3 19,114 - MPMX19_04639 0.11 +0.2 19,114 - MPMX19_04639 0.11 +0.2 19,114 - MPMX19_04639 0.11 +0.1 19,167 + MPMX19_04639 0.13 +0.8 19,395 + MPMX19_04639 0.21 -0.2 19,395 + MPMX19_04639 0.21 -0.1 19,395 + MPMX19_04639 0.21 -2.5 19,395 + MPMX19_04639 0.21 -0.1 19,396 - MPMX19_04639 0.21 +0.3 19,396 - MPMX19_04639 0.21 +0.9 19,396 - MPMX19_04639 0.21 -0.6 19,396 - MPMX19_04639 0.21 +0.2 19,449 + MPMX19_04639 0.23 +0.1 19,449 + MPMX19_04639 0.23 -0.8 19,449 + MPMX19_04639 0.23 -1.1 19,449 + MPMX19_04639 0.23 +0.1 19,449 + MPMX19_04639 0.23 -1.2 19,449 + MPMX19_04639 0.23 -0.2
Or see this region's nucleotide sequence