Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04628

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04627 and MPMX19_04628 are separated by 518 nucleotidesMPMX19_04628 and MPMX19_04629 are separated by 41 nucleotides MPMX19_04627: MPMX19_04627 - HTH-type transcriptional regulator DegA, at 1 to 1,014 _04627 MPMX19_04628: MPMX19_04628 - hypothetical protein, at 1,533 to 2,918 _04628 MPMX19_04629: MPMX19_04629 - D-inositol-3-phosphate glycosyltransferase, at 2,960 to 4,807 _04629 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 1.119 kb on + strandat 1.169 kb on + strandat 1.170 kb on - strandat 1.170 kb on - strandat 1.170 kb on - strandat 1.170 kb on - strandat 1.174 kb on + strandat 1.174 kb on + strandat 1.174 kb on + strandat 1.175 kb on - strandat 1.175 kb on - strandat 1.175 kb on - strandat 1.175 kb on - strandat 1.175 kb on - strandat 1.175 kb on - strandat 1.338 kb on + strandat 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.764 kb on + strand, within MPMX19_04628at 1.765 kb on - strand, within MPMX19_04628at 1.765 kb on - strand, within MPMX19_04628at 1.765 kb on - strand, within MPMX19_04628at 1.765 kb on - strand, within MPMX19_04628at 1.765 kb on - strand, within MPMX19_04628at 1.765 kb on - strand, within MPMX19_04628at 1.765 kb on - strand, within MPMX19_04628at 1.860 kb on + strand, within MPMX19_04628at 1.860 kb on + strand, within MPMX19_04628at 1.860 kb on + strand, within MPMX19_04628at 1.861 kb on - strand, within MPMX19_04628at 1.923 kb on + strand, within MPMX19_04628at 1.923 kb on + strand, within MPMX19_04628at 1.924 kb on - strand, within MPMX19_04628at 1.924 kb on - strand, within MPMX19_04628at 1.924 kb on - strand, within MPMX19_04628at 1.924 kb on - strand, within MPMX19_04628at 1.924 kb on - strand, within MPMX19_04628at 1.924 kb on - strand, within MPMX19_04628at 1.924 kb on - strand, within MPMX19_04628at 2.046 kb on + strand, within MPMX19_04628at 2.046 kb on + strand, within MPMX19_04628at 2.046 kb on + strand, within MPMX19_04628at 2.047 kb on - strand, within MPMX19_04628at 2.047 kb on - strand, within MPMX19_04628at 2.143 kb on + strand, within MPMX19_04628at 2.143 kb on + strand, within MPMX19_04628at 2.143 kb on + strand, within MPMX19_04628at 2.144 kb on - strand, within MPMX19_04628at 2.144 kb on - strand, within MPMX19_04628at 2.205 kb on + strand, within MPMX19_04628at 2.206 kb on - strand, within MPMX19_04628at 2.206 kb on - strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.307 kb on + strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.308 kb on - strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.505 kb on + strand, within MPMX19_04628at 2.506 kb on - strand, within MPMX19_04628at 2.506 kb on - strand, within MPMX19_04628at 2.506 kb on - strand, within MPMX19_04628at 2.568 kb on + strand, within MPMX19_04628at 2.601 kb on + strand, within MPMX19_04628at 2.601 kb on + strand, within MPMX19_04628at 2.602 kb on - strand, within MPMX19_04628at 2.731 kb on - strand, within MPMX19_04628at 2.731 kb on - strand, within MPMX19_04628at 2.763 kb on + strand, within MPMX19_04628at 2.763 kb on + strand, within MPMX19_04628at 2.763 kb on + strand, within MPMX19_04628at 2.764 kb on - strand, within MPMX19_04628at 2.879 kb on + strandat 2.879 kb on + strandat 2.880 kb on - strandat 2.880 kb on - strandat 2.880 kb on - strandat 2.880 kb on - strandat 2.940 kb on + strandat 2.941 kb on - strandat 2.987 kb on + strandat 3.064 kb on + strandat 3.065 kb on - strandat 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.422 kb on + strand, within MPMX19_04629at 3.423 kb on - strand, within MPMX19_04629at 3.461 kb on + strand, within MPMX19_04629at 3.461 kb on + strand, within MPMX19_04629at 3.461 kb on + strand, within MPMX19_04629at 3.462 kb on - strand, within MPMX19_04629

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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1,119 + -0.5
1,169 + -0.1
1,170 - -0.0
1,170 - +0.6
1,170 - -0.7
1,170 - +1.5
1,174 + -0.4
1,174 + -1.5
1,174 + +0.6
1,175 - +0.6
1,175 - -0.5
1,175 - +0.9
1,175 - +0.1
1,175 - -0.2
1,175 - +1.2
1,338 + +0.3
1,764 + MPMX19_04628 0.17 +1.7
1,764 + MPMX19_04628 0.17 -0.3
1,764 + MPMX19_04628 0.17 -0.4
1,764 + MPMX19_04628 0.17 +0.3
1,764 + MPMX19_04628 0.17 -0.1
1,764 + MPMX19_04628 0.17 +0.5
1,764 + MPMX19_04628 0.17 +0.1
1,764 + MPMX19_04628 0.17 -0.2
1,764 + MPMX19_04628 0.17 +0.0
1,764 + MPMX19_04628 0.17 +0.2
1,764 + MPMX19_04628 0.17 +1.5
1,764 + MPMX19_04628 0.17 -0.7
1,764 + MPMX19_04628 0.17 +0.5
1,765 - MPMX19_04628 0.17 +0.5
1,765 - MPMX19_04628 0.17 +0.1
1,765 - MPMX19_04628 0.17 -1.4
1,765 - MPMX19_04628 0.17 -0.6
1,765 - MPMX19_04628 0.17 -0.6
1,765 - MPMX19_04628 0.17 +0.2
1,765 - MPMX19_04628 0.17 +0.6
1,860 + MPMX19_04628 0.24 +0.9
1,860 + MPMX19_04628 0.24 -0.7
1,860 + MPMX19_04628 0.24 +0.2
1,861 - MPMX19_04628 0.24 +0.7
1,923 + MPMX19_04628 0.28 -0.8
1,923 + MPMX19_04628 0.28 -0.5
1,924 - MPMX19_04628 0.28 +0.8
1,924 - MPMX19_04628 0.28 +0.2
1,924 - MPMX19_04628 0.28 +0.2
1,924 - MPMX19_04628 0.28 -0.2
1,924 - MPMX19_04628 0.28 -0.5
1,924 - MPMX19_04628 0.28 +0.4
1,924 - MPMX19_04628 0.28 -0.5
2,046 + MPMX19_04628 0.37 +0.5
2,046 + MPMX19_04628 0.37 +1.7
2,046 + MPMX19_04628 0.37 +0.3
2,047 - MPMX19_04628 0.37 +0.5
2,047 - MPMX19_04628 0.37 +0.5
2,143 + MPMX19_04628 0.44 -1.1
2,143 + MPMX19_04628 0.44 -0.5
2,143 + MPMX19_04628 0.44 +1.5
2,144 - MPMX19_04628 0.44 -1.7
2,144 - MPMX19_04628 0.44 +0.8
2,205 + MPMX19_04628 0.48 -0.1
2,206 - MPMX19_04628 0.49 -0.6
2,206 - MPMX19_04628 0.49 +0.9
2,307 + MPMX19_04628 0.56 -0.5
2,307 + MPMX19_04628 0.56 +0.2
2,307 + MPMX19_04628 0.56 -1.8
2,307 + MPMX19_04628 0.56 +0.5
2,308 - MPMX19_04628 0.56 -1.1
2,308 - MPMX19_04628 0.56 +0.7
2,308 - MPMX19_04628 0.56 -1.4
2,308 - MPMX19_04628 0.56 +0.5
2,505 + MPMX19_04628 0.70 -1.7
2,505 + MPMX19_04628 0.70 +0.5
2,505 + MPMX19_04628 0.70 +0.3
2,505 + MPMX19_04628 0.70 -1.1
2,505 + MPMX19_04628 0.70 -0.0
2,505 + MPMX19_04628 0.70 +1.1
2,505 + MPMX19_04628 0.70 -0.0
2,505 + MPMX19_04628 0.70 -0.5
2,505 + MPMX19_04628 0.70 +0.1
2,506 - MPMX19_04628 0.70 +1.9
2,506 - MPMX19_04628 0.70 +0.5
2,506 - MPMX19_04628 0.70 +1.5
2,568 + MPMX19_04628 0.75 +1.3
2,601 + MPMX19_04628 0.77 -0.8
2,601 + MPMX19_04628 0.77 -0.3
2,602 - MPMX19_04628 0.77 +1.2
2,731 - MPMX19_04628 0.86 +0.2
2,731 - MPMX19_04628 0.86 +0.5
2,763 + MPMX19_04628 0.89 +1.0
2,763 + MPMX19_04628 0.89 +1.3
2,763 + MPMX19_04628 0.89 -1.2
2,764 - MPMX19_04628 0.89 -0.5
2,879 + -0.4
2,879 + -0.1
2,880 - +1.4
2,880 - -0.8
2,880 - +0.3
2,880 - +1.1
2,940 + -0.2
2,941 - +0.2
2,987 + +0.6
3,064 + -0.1
3,065 - -0.7
3,422 + MPMX19_04629 0.25 -0.5
3,422 + MPMX19_04629 0.25 +0.5
3,422 + MPMX19_04629 0.25 +0.6
3,422 + MPMX19_04629 0.25 +0.7
3,422 + MPMX19_04629 0.25 -0.2
3,422 + MPMX19_04629 0.25 +1.2
3,422 + MPMX19_04629 0.25 -2.1
3,422 + MPMX19_04629 0.25 +1.3
3,423 - MPMX19_04629 0.25 -1.6
3,461 + MPMX19_04629 0.27 +0.6
3,461 + MPMX19_04629 0.27 +0.8
3,461 + MPMX19_04629 0.27 +0.5
3,462 - MPMX19_04629 0.27 +0.2

Or see this region's nucleotide sequence