Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04588 and MPMX19_04589 overlap by 56 nucleotides MPMX19_04589 and MPMX19_04590 are separated by 370 nucleotides
MPMX19_04588: MPMX19_04588 - Sensor histidine kinase RcsC, at 967,808 to 971,281
_04588
MPMX19_04589: MPMX19_04589 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 971,226 to 972,200
_04589
MPMX19_04590: MPMX19_04590 - Nitrate import ATP-binding protein NrtD, at 972,571 to 973,404
_04590
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 970.979 kb on + strand at 970.979 kb on + strand at 970.979 kb on + strand at 970.980 kb on - strand at 970.980 kb on - strand at 970.980 kb on - strand at 970.980 kb on - strand at 970.980 kb on - strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.084 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.180 kb on + strand at 971.181 kb on - strand at 971.181 kb on - strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.195 kb on + strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.196 kb on - strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.197 kb on + strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.198 kb on - strand at 971.220 kb on - strand at 971.220 kb on - strand at 971.220 kb on - strand at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.543 kb on + strand, within MPMX19_04589 at 971.544 kb on - strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.577 kb on + strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.578 kb on - strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.622 kb on + strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 971.623 kb on - strand, within MPMX19_04589 at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.129 kb on + strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.130 kb on - strand at 972.198 kb on + strand at 972.198 kb on + strand at 972.198 kb on + strand at 972.198 kb on + strand at 972.213 kb on + strand at 972.213 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.334 kb on + strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.335 kb on - strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.361 kb on + strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.362 kb on - strand at 972.406 kb on + strand at 972.407 kb on - strand at 972.658 kb on - strand, within MPMX19_04590 at 972.674 kb on + strand, within MPMX19_04590 at 972.674 kb on + strand, within MPMX19_04590 at 972.674 kb on + strand, within MPMX19_04590 at 972.675 kb on - strand, within MPMX19_04590 at 972.675 kb on - strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.694 kb on + strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.695 kb on - strand, within MPMX19_04590 at 972.727 kb on + strand, within MPMX19_04590 at 972.727 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.763 kb on + strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.764 kb on - strand, within MPMX19_04590 at 972.823 kb on + strand, within MPMX19_04590 at 972.824 kb on - strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.015 kb on + strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.016 kb on - strand, within MPMX19_04590 at 973.147 kb on + strand, within MPMX19_04590 at 973.147 kb on + strand, within MPMX19_04590 at 973.147 kb on + strand, within MPMX19_04590 at 973.148 kb on - strand, within MPMX19_04590 at 973.148 kb on - strand, within MPMX19_04590 at 973.148 kb on - strand, within MPMX19_04590
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 970,979 + +0.0 970,979 + -0.4 970,979 + -0.3 970,980 - +0.0 970,980 - +0.5 970,980 - -0.6 970,980 - -1.2 970,980 - +1.7 971,084 + +0.7 971,084 + -1.1 971,084 + +0.2 971,084 + -0.4 971,084 + +1.6 971,084 + +1.6 971,180 + +0.3 971,180 + +0.4 971,180 + +0.2 971,180 + +1.1 971,180 + +0.6 971,180 + +1.8 971,180 + -0.1 971,180 + -0.1 971,180 + +1.9 971,181 - -0.3 971,181 - +0.8 971,195 + +0.0 971,195 + +0.4 971,195 + -1.4 971,195 + +1.6 971,195 + -0.1 971,195 + +1.6 971,195 + -0.1 971,195 + +0.9 971,195 + +0.4 971,195 + -0.6 971,195 + -1.0 971,195 + -0.1 971,195 + -2.7 971,196 - -0.2 971,196 - +0.2 971,196 - -0.1 971,196 - +0.4 971,196 - -1.4 971,196 - -2.0 971,196 - -1.4 971,196 - -1.4 971,196 - -0.4 971,197 + -0.6 971,197 + -1.1 971,197 + +0.6 971,197 + -0.4 971,197 + -0.4 971,197 + +0.3 971,197 + -1.6 971,197 + +0.6 971,197 + +0.2 971,198 - +0.3 971,198 - +0.2 971,198 - +0.1 971,198 - +1.3 971,198 - +0.3 971,198 - +0.4 971,198 - +1.1 971,198 - -0.1 971,198 - -0.7 971,198 - +0.7 971,220 - -2.2 971,220 - -0.3 971,220 - +1.2 971,543 + MPMX19_04589 0.33 -0.2 971,543 + MPMX19_04589 0.33 +0.1 971,543 + MPMX19_04589 0.33 -1.9 971,543 + MPMX19_04589 0.33 +0.4 971,543 + MPMX19_04589 0.33 +0.9 971,544 - MPMX19_04589 0.33 -0.3 971,577 + MPMX19_04589 0.36 +0.4 971,577 + MPMX19_04589 0.36 +0.0 971,577 + MPMX19_04589 0.36 +0.4 971,577 + MPMX19_04589 0.36 +0.1 971,578 - MPMX19_04589 0.36 +0.3 971,578 - MPMX19_04589 0.36 +1.4 971,578 - MPMX19_04589 0.36 +0.4 971,578 - MPMX19_04589 0.36 +0.1 971,578 - MPMX19_04589 0.36 +0.6 971,578 - MPMX19_04589 0.36 -0.4 971,578 - MPMX19_04589 0.36 -0.7 971,622 + MPMX19_04589 0.41 -0.4 971,622 + MPMX19_04589 0.41 -0.3 971,622 + MPMX19_04589 0.41 +1.6 971,622 + MPMX19_04589 0.41 -0.7 971,622 + MPMX19_04589 0.41 -0.4 971,622 + MPMX19_04589 0.41 -0.6 971,622 + MPMX19_04589 0.41 -2.9 971,622 + MPMX19_04589 0.41 +0.4 971,622 + MPMX19_04589 0.41 -1.6 971,622 + MPMX19_04589 0.41 +0.3 971,622 + MPMX19_04589 0.41 +0.1 971,622 + MPMX19_04589 0.41 +0.4 971,622 + MPMX19_04589 0.41 +0.2 971,622 + MPMX19_04589 0.41 -1.9 971,622 + MPMX19_04589 0.41 +0.8 971,622 + MPMX19_04589 0.41 -1.4 971,623 - MPMX19_04589 0.41 -0.9 971,623 - MPMX19_04589 0.41 +0.6 971,623 - MPMX19_04589 0.41 +0.6 971,623 - MPMX19_04589 0.41 -0.1 971,623 - MPMX19_04589 0.41 +0.8 971,623 - MPMX19_04589 0.41 -0.1 971,623 - MPMX19_04589 0.41 -0.5 971,623 - MPMX19_04589 0.41 +1.1 971,623 - MPMX19_04589 0.41 +1.6 971,623 - MPMX19_04589 0.41 +0.5 971,623 - MPMX19_04589 0.41 -0.2 971,623 - MPMX19_04589 0.41 +0.8 971,623 - MPMX19_04589 0.41 -1.0 971,623 - MPMX19_04589 0.41 +0.5 972,129 + -0.8 972,129 + -1.1 972,129 + +0.3 972,129 + -0.1 972,129 + -1.4 972,129 + -1.9 972,129 + -2.2 972,129 + -0.6 972,129 + +0.9 972,129 + -0.9 972,129 + -1.1 972,130 - -0.2 972,130 - +0.4 972,130 - -0.5 972,130 - -0.6 972,130 - +0.8 972,130 - +0.5 972,130 - -1.2 972,130 - -0.6 972,198 + -1.4 972,198 + -1.9 972,198 + +0.0 972,198 + +0.6 972,213 + -1.4 972,213 + -1.9 972,334 + +0.7 972,334 + -0.5 972,334 + +0.6 972,334 + +1.6 972,334 + +0.0 972,334 + +0.4 972,334 + +1.6 972,334 + -0.6 972,334 + -0.4 972,334 + -0.2 972,334 + -0.6 972,334 + +1.0 972,334 + -0.7 972,334 + -0.6 972,334 + -0.1 972,334 + -1.2 972,334 + +0.2 972,334 + +0.8 972,335 - -1.8 972,335 - -0.1 972,335 - +2.0 972,335 - +0.0 972,335 - +0.3 972,335 - -0.9 972,335 - -0.2 972,335 - +0.2 972,361 + -1.2 972,361 + +0.8 972,361 + +0.4 972,361 + +1.0 972,361 + -0.7 972,361 + +0.6 972,361 + +0.6 972,361 + -1.0 972,361 + -0.4 972,361 + -0.6 972,361 + +1.3 972,361 + +0.5 972,361 + +0.0 972,362 - -0.7 972,362 - +0.0 972,362 - +0.0 972,362 - +1.4 972,362 - -1.7 972,406 + -3.0 972,407 - -0.3 972,658 - MPMX19_04590 0.10 -0.3 972,674 + MPMX19_04590 0.12 +0.1 972,674 + MPMX19_04590 0.12 +0.2 972,674 + MPMX19_04590 0.12 +0.2 972,675 - MPMX19_04590 0.12 -0.2 972,675 - MPMX19_04590 0.12 -0.3 972,694 + MPMX19_04590 0.15 +0.3 972,694 + MPMX19_04590 0.15 -0.4 972,694 + MPMX19_04590 0.15 -0.9 972,694 + MPMX19_04590 0.15 -0.7 972,694 + MPMX19_04590 0.15 -1.1 972,694 + MPMX19_04590 0.15 +1.0 972,695 - MPMX19_04590 0.15 +1.3 972,695 - MPMX19_04590 0.15 +0.6 972,695 - MPMX19_04590 0.15 +0.1 972,695 - MPMX19_04590 0.15 -0.2 972,695 - MPMX19_04590 0.15 +0.2 972,695 - MPMX19_04590 0.15 -0.9 972,727 + MPMX19_04590 0.19 +0.4 972,727 + MPMX19_04590 0.19 +1.4 972,763 + MPMX19_04590 0.23 -1.0 972,763 + MPMX19_04590 0.23 -0.8 972,763 + MPMX19_04590 0.23 -0.2 972,763 + MPMX19_04590 0.23 -0.3 972,763 + MPMX19_04590 0.23 +0.3 972,763 + MPMX19_04590 0.23 -1.7 972,764 - MPMX19_04590 0.23 +0.3 972,764 - MPMX19_04590 0.23 +1.1 972,764 - MPMX19_04590 0.23 +0.2 972,764 - MPMX19_04590 0.23 +0.4 972,764 - MPMX19_04590 0.23 -0.2 972,764 - MPMX19_04590 0.23 +1.4 972,823 + MPMX19_04590 0.30 +0.8 972,824 - MPMX19_04590 0.30 -0.3 973,015 + MPMX19_04590 0.53 +1.1 973,015 + MPMX19_04590 0.53 -1.6 973,015 + MPMX19_04590 0.53 +0.4 973,015 + MPMX19_04590 0.53 +0.3 973,015 + MPMX19_04590 0.53 +2.2 973,015 + MPMX19_04590 0.53 -1.0 973,015 + MPMX19_04590 0.53 -1.3 973,015 + MPMX19_04590 0.53 +0.4 973,016 - MPMX19_04590 0.53 -0.4 973,016 - MPMX19_04590 0.53 +0.3 973,016 - MPMX19_04590 0.53 +0.7 973,016 - MPMX19_04590 0.53 -0.4 973,016 - MPMX19_04590 0.53 +0.5 973,016 - MPMX19_04590 0.53 +0.3 973,016 - MPMX19_04590 0.53 +0.2 973,016 - MPMX19_04590 0.53 +0.2 973,016 - MPMX19_04590 0.53 -0.6 973,016 - MPMX19_04590 0.53 -1.5 973,016 - MPMX19_04590 0.53 +1.0 973,147 + MPMX19_04590 0.69 -1.6 973,147 + MPMX19_04590 0.69 +0.2 973,147 + MPMX19_04590 0.69 +0.0 973,148 - MPMX19_04590 0.69 +2.3 973,148 - MPMX19_04590 0.69 -1.9 973,148 - MPMX19_04590 0.69 +0.3
Or see this region's nucleotide sequence