Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04463 and MPMX19_04464 are separated by 79 nucleotides MPMX19_04464 and MPMX19_04465 are separated by 201 nucleotides MPMX19_04465 and MPMX19_04466 are separated by 168 nucleotides MPMX19_04466 and MPMX19_04467 are separated by 216 nucleotides MPMX19_04467 and MPMX19_04468 are separated by 206 nucleotides
MPMX19_04463: MPMX19_04463 - Oxalate:formate antiporter, at 830,643 to 831,950
_04463
MPMX19_04464: MPMX19_04464 - hypothetical protein, at 832,030 to 832,440
_04464
MPMX19_04465: MPMX19_04465 - Pantothenate synthetase, at 832,642 to 833,550
_04465
MPMX19_04466: MPMX19_04466 - hypothetical protein, at 833,719 to 833,883
_04466
MPMX19_04467: MPMX19_04467 - tRNA-Val, at 834,100 to 834,174
_04467
MPMX19_04468: MPMX19_04468 - hypothetical protein, at 834,381 to 835,286
_04468
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 831.738 kb on + strand, within MPMX19_04463 at 831.738 kb on + strand, within MPMX19_04463 at 831.738 kb on + strand, within MPMX19_04463 at 831.738 kb on + strand, within MPMX19_04463 at 831.739 kb on - strand, within MPMX19_04463 at 831.739 kb on - strand, within MPMX19_04463 at 831.739 kb on - strand, within MPMX19_04463 at 831.822 kb on + strand at 831.822 kb on + strand at 831.822 kb on + strand at 831.822 kb on + strand at 831.823 kb on - strand at 831.823 kb on - strand at 831.823 kb on - strand at 831.823 kb on - strand at 831.823 kb on - strand at 831.894 kb on + strand at 831.894 kb on + strand at 831.894 kb on + strand at 831.895 kb on - strand at 831.895 kb on - strand at 831.895 kb on - strand at 831.895 kb on - strand at 831.962 kb on + strand at 831.962 kb on + strand at 831.962 kb on + strand at 831.962 kb on + strand at 831.962 kb on + strand at 831.962 kb on + strand at 831.962 kb on + strand at 831.963 kb on - strand at 831.963 kb on - strand at 831.963 kb on - strand at 831.963 kb on - strand at 831.963 kb on - strand at 831.963 kb on - strand at 831.963 kb on - strand at 832.031 kb on + strand at 832.031 kb on + strand at 832.031 kb on + strand at 832.031 kb on + strand at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.205 kb on + strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.206 kb on - strand, within MPMX19_04464 at 832.319 kb on + strand, within MPMX19_04464 at 832.319 kb on + strand, within MPMX19_04464 at 832.319 kb on + strand, within MPMX19_04464 at 832.319 kb on + strand, within MPMX19_04464 at 832.320 kb on - strand, within MPMX19_04464 at 832.320 kb on - strand, within MPMX19_04464 at 832.320 kb on - strand, within MPMX19_04464 at 832.320 kb on - strand, within MPMX19_04464 at 832.320 kb on - strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.379 kb on + strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.380 kb on - strand, within MPMX19_04464 at 832.552 kb on + strand at 832.552 kb on + strand at 832.552 kb on + strand at 832.552 kb on + strand at 832.552 kb on + strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.553 kb on - strand at 832.620 kb on + strand at 832.621 kb on - strand at 832.621 kb on - strand at 832.621 kb on - strand at 832.621 kb on - strand at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.772 kb on + strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.773 kb on - strand, within MPMX19_04465 at 832.780 kb on - strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.922 kb on + strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 832.923 kb on - strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.039 kb on + strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.040 kb on - strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.195 kb on + strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.196 kb on - strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.219 kb on + strand, within MPMX19_04465 at 833.220 kb on - strand, within MPMX19_04465 at 833.635 kb on + strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.636 kb on - strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.646 kb on + strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.647 kb on - strand at 833.727 kb on + strand at 833.747 kb on + strand, within MPMX19_04466 at 833.747 kb on + strand, within MPMX19_04466 at 833.748 kb on + strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.748 kb on - strand, within MPMX19_04466 at 833.874 kb on + strand at 833.928 kb on + strand at 833.928 kb on + strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.929 kb on - strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.933 kb on + strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.934 kb on - strand at 833.990 kb on + strand at 833.990 kb on + strand at 833.991 kb on - strand at 833.991 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.098 kb on - strand at 834.300 kb on + strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.301 kb on - strand at 834.531 kb on + strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468 at 834.532 kb on - strand, within MPMX19_04468
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 831,738 + MPMX19_04463 0.84 -1.2 831,738 + MPMX19_04463 0.84 +0.1 831,738 + MPMX19_04463 0.84 +0.6 831,738 + MPMX19_04463 0.84 -1.1 831,739 - MPMX19_04463 0.84 +1.4 831,739 - MPMX19_04463 0.84 -0.3 831,739 - MPMX19_04463 0.84 -1.8 831,822 + -2.0 831,822 + +0.1 831,822 + -0.7 831,822 + -0.1 831,823 - -1.0 831,823 - +0.0 831,823 - +1.0 831,823 - -0.2 831,823 - -1.7 831,894 + -0.6 831,894 + -0.4 831,894 + +0.9 831,895 - -1.2 831,895 - -0.9 831,895 - +0.0 831,895 - -2.4 831,962 + -0.8 831,962 + -0.2 831,962 + -2.1 831,962 + -2.2 831,962 + -0.7 831,962 + -0.5 831,962 + +0.5 831,963 - +0.8 831,963 - +0.4 831,963 - +0.3 831,963 - +0.0 831,963 - +0.6 831,963 - +0.6 831,963 - -0.7 832,031 + +0.0 832,031 + -0.2 832,031 + +0.0 832,031 + +0.6 832,205 + MPMX19_04464 0.43 +0.9 832,205 + MPMX19_04464 0.43 +0.6 832,205 + MPMX19_04464 0.43 -0.1 832,205 + MPMX19_04464 0.43 +0.1 832,205 + MPMX19_04464 0.43 -1.4 832,205 + MPMX19_04464 0.43 -1.0 832,205 + MPMX19_04464 0.43 +1.9 832,205 + MPMX19_04464 0.43 -1.5 832,205 + MPMX19_04464 0.43 -0.2 832,205 + MPMX19_04464 0.43 -0.4 832,205 + MPMX19_04464 0.43 +0.1 832,205 + MPMX19_04464 0.43 +0.2 832,205 + MPMX19_04464 0.43 -0.3 832,205 + MPMX19_04464 0.43 -2.1 832,205 + MPMX19_04464 0.43 +0.2 832,206 - MPMX19_04464 0.43 -0.2 832,206 - MPMX19_04464 0.43 +0.1 832,206 - MPMX19_04464 0.43 +0.6 832,206 - MPMX19_04464 0.43 +0.3 832,206 - MPMX19_04464 0.43 -0.2 832,206 - MPMX19_04464 0.43 -0.6 832,206 - MPMX19_04464 0.43 +0.6 832,206 - MPMX19_04464 0.43 +0.1 832,206 - MPMX19_04464 0.43 +0.5 832,206 - MPMX19_04464 0.43 -1.6 832,206 - MPMX19_04464 0.43 -0.1 832,206 - MPMX19_04464 0.43 -0.5 832,319 + MPMX19_04464 0.70 -1.6 832,319 + MPMX19_04464 0.70 -0.1 832,319 + MPMX19_04464 0.70 +1.2 832,319 + MPMX19_04464 0.70 -1.3 832,320 - MPMX19_04464 0.71 +0.7 832,320 - MPMX19_04464 0.71 +0.1 832,320 - MPMX19_04464 0.71 +0.3 832,320 - MPMX19_04464 0.71 -0.9 832,320 - MPMX19_04464 0.71 +0.2 832,379 + MPMX19_04464 0.85 -0.1 832,379 + MPMX19_04464 0.85 +0.4 832,379 + MPMX19_04464 0.85 +0.3 832,379 + MPMX19_04464 0.85 +0.3 832,379 + MPMX19_04464 0.85 -1.2 832,379 + MPMX19_04464 0.85 -1.2 832,379 + MPMX19_04464 0.85 -0.6 832,379 + MPMX19_04464 0.85 +0.2 832,379 + MPMX19_04464 0.85 -0.2 832,379 + MPMX19_04464 0.85 -0.1 832,379 + MPMX19_04464 0.85 -1.6 832,379 + MPMX19_04464 0.85 +0.9 832,379 + MPMX19_04464 0.85 +0.3 832,379 + MPMX19_04464 0.85 -0.1 832,379 + MPMX19_04464 0.85 -0.0 832,379 + MPMX19_04464 0.85 -2.6 832,379 + MPMX19_04464 0.85 -0.9 832,379 + MPMX19_04464 0.85 -0.2 832,379 + MPMX19_04464 0.85 -0.7 832,379 + MPMX19_04464 0.85 -1.5 832,379 + MPMX19_04464 0.85 -0.7 832,380 - MPMX19_04464 0.85 -0.6 832,380 - MPMX19_04464 0.85 -0.4 832,380 - MPMX19_04464 0.85 +1.1 832,380 - MPMX19_04464 0.85 +0.4 832,380 - MPMX19_04464 0.85 +0.2 832,380 - MPMX19_04464 0.85 -0.7 832,380 - MPMX19_04464 0.85 -1.0 832,380 - MPMX19_04464 0.85 -0.4 832,380 - MPMX19_04464 0.85 -0.4 832,380 - MPMX19_04464 0.85 +0.0 832,380 - MPMX19_04464 0.85 +1.3 832,380 - MPMX19_04464 0.85 +0.2 832,380 - MPMX19_04464 0.85 -0.7 832,380 - MPMX19_04464 0.85 -1.7 832,380 - MPMX19_04464 0.85 -1.2 832,380 - MPMX19_04464 0.85 -0.9 832,380 - MPMX19_04464 0.85 -0.5 832,380 - MPMX19_04464 0.85 -0.1 832,552 + +0.5 832,552 + +0.3 832,552 + +0.9 832,552 + -0.6 832,552 + -0.3 832,553 - -0.1 832,553 - -1.4 832,553 - -2.9 832,553 - +0.0 832,553 - -0.9 832,553 - -1.1 832,553 - -0.1 832,553 - -0.4 832,553 - -0.3 832,553 - -1.9 832,553 - -1.2 832,553 - +1.1 832,620 + +0.3 832,621 - -0.4 832,621 - -0.2 832,621 - -1.9 832,621 - -0.2 832,772 + MPMX19_04465 0.14 -0.9 832,772 + MPMX19_04465 0.14 -0.9 832,772 + MPMX19_04465 0.14 -0.6 832,772 + MPMX19_04465 0.14 +0.1 832,772 + MPMX19_04465 0.14 -0.8 832,772 + MPMX19_04465 0.14 -0.2 832,772 + MPMX19_04465 0.14 -1.0 832,772 + MPMX19_04465 0.14 +1.2 832,772 + MPMX19_04465 0.14 +0.3 832,772 + MPMX19_04465 0.14 +0.6 832,773 - MPMX19_04465 0.14 -0.1 832,773 - MPMX19_04465 0.14 -0.7 832,773 - MPMX19_04465 0.14 -0.1 832,773 - MPMX19_04465 0.14 +0.0 832,773 - MPMX19_04465 0.14 -1.4 832,773 - MPMX19_04465 0.14 -0.7 832,773 - MPMX19_04465 0.14 -2.4 832,773 - MPMX19_04465 0.14 -0.6 832,773 - MPMX19_04465 0.14 -0.9 832,773 - MPMX19_04465 0.14 -1.6 832,773 - MPMX19_04465 0.14 -1.2 832,773 - MPMX19_04465 0.14 -1.6 832,773 - MPMX19_04465 0.14 -1.0 832,780 - MPMX19_04465 0.15 -0.2 832,922 + MPMX19_04465 0.31 +1.9 832,922 + MPMX19_04465 0.31 +0.3 832,922 + MPMX19_04465 0.31 +1.3 832,922 + MPMX19_04465 0.31 -0.7 832,922 + MPMX19_04465 0.31 -0.2 832,922 + MPMX19_04465 0.31 -1.1 832,922 + MPMX19_04465 0.31 -0.7 832,923 - MPMX19_04465 0.31 -1.1 832,923 - MPMX19_04465 0.31 -1.6 832,923 - MPMX19_04465 0.31 -0.9 832,923 - MPMX19_04465 0.31 -0.4 832,923 - MPMX19_04465 0.31 -0.6 833,039 + MPMX19_04465 0.44 +1.4 833,039 + MPMX19_04465 0.44 +0.0 833,039 + MPMX19_04465 0.44 -0.4 833,039 + MPMX19_04465 0.44 -0.1 833,040 - MPMX19_04465 0.44 +0.6 833,040 - MPMX19_04465 0.44 -1.5 833,040 - MPMX19_04465 0.44 -0.3 833,195 + MPMX19_04465 0.61 +0.2 833,195 + MPMX19_04465 0.61 -0.4 833,195 + MPMX19_04465 0.61 -0.1 833,195 + MPMX19_04465 0.61 +0.3 833,195 + MPMX19_04465 0.61 -1.3 833,195 + MPMX19_04465 0.61 -0.6 833,195 + MPMX19_04465 0.61 -2.0 833,196 - MPMX19_04465 0.61 +1.0 833,196 - MPMX19_04465 0.61 -0.7 833,196 - MPMX19_04465 0.61 +0.3 833,196 - MPMX19_04465 0.61 -0.5 833,196 - MPMX19_04465 0.61 +0.0 833,196 - MPMX19_04465 0.61 +0.2 833,196 - MPMX19_04465 0.61 -0.4 833,196 - MPMX19_04465 0.61 -0.9 833,219 + MPMX19_04465 0.63 -0.4 833,219 + MPMX19_04465 0.63 +1.0 833,219 + MPMX19_04465 0.63 +0.8 833,220 - MPMX19_04465 0.64 -2.0 833,635 + -1.7 833,636 - -1.3 833,636 - -0.2 833,636 - +0.1 833,646 + +0.3 833,646 + +0.4 833,646 + -1.5 833,646 + +0.6 833,646 + -0.4 833,647 - -3.7 833,647 - +0.1 833,647 - -0.2 833,647 - -0.4 833,727 + -1.0 833,747 + MPMX19_04466 0.17 -0.9 833,747 + MPMX19_04466 0.17 +0.8 833,748 + MPMX19_04466 0.18 -0.3 833,748 - MPMX19_04466 0.18 -0.4 833,748 - MPMX19_04466 0.18 +0.5 833,748 - MPMX19_04466 0.18 -0.4 833,748 - MPMX19_04466 0.18 -1.3 833,748 - MPMX19_04466 0.18 -0.6 833,748 - MPMX19_04466 0.18 -0.7 833,874 + -2.0 833,928 + -0.3 833,928 + +0.2 833,929 - -0.2 833,929 - -1.0 833,929 - -1.6 833,929 - +0.8 833,929 - +0.5 833,929 - -0.7 833,933 + -2.6 833,933 + -0.1 833,933 + +0.9 833,934 - +0.9 833,934 - +0.1 833,934 - -0.1 833,934 - -0.3 833,934 - +0.3 833,934 - -2.0 833,934 - +0.3 833,934 - -1.7 833,990 + -0.7 833,990 + -1.8 833,991 - +1.4 833,991 - +0.9 834,098 - -0.3 834,098 - -0.6 834,098 - -0.4 834,300 + -1.2 834,301 - +0.6 834,301 - +0.9 834,301 - -2.1 834,531 + MPMX19_04468 0.17 -1.7 834,532 - MPMX19_04468 0.17 -1.2 834,532 - MPMX19_04468 0.17 +0.1 834,532 - MPMX19_04468 0.17 +0.8 834,532 - MPMX19_04468 0.17 -0.9
Or see this region's nucleotide sequence