Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03368 and MPMX19_03369 overlap by 13 nucleotides MPMX19_03369 and MPMX19_03370 overlap by 4 nucleotides MPMX19_03370 and MPMX19_03371 are separated by 2 nucleotides MPMX19_03371 and MPMX19_03372 are separated by 14 nucleotides
MPMX19_03368: MPMX19_03368 - hypothetical protein, at 741,972 to 745,289
_03368
MPMX19_03369: MPMX19_03369 - hypothetical protein, at 745,277 to 746,047
_03369
MPMX19_03370: MPMX19_03370 - hypothetical protein, at 746,044 to 746,520
_03370
MPMX19_03371: MPMX19_03371 - hypothetical protein, at 746,523 to 746,906
_03371
MPMX19_03372: MPMX19_03372 - hypothetical protein, at 746,921 to 750,010
_03372
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 744.404 kb on + strand, within MPMX19_03368 at 744.404 kb on + strand, within MPMX19_03368 at 744.404 kb on + strand, within MPMX19_03368 at 744.405 kb on - strand, within MPMX19_03368 at 744.436 kb on + strand, within MPMX19_03368 at 744.436 kb on + strand, within MPMX19_03368 at 744.437 kb on - strand, within MPMX19_03368 at 744.437 kb on - strand, within MPMX19_03368 at 744.973 kb on + strand at 744.973 kb on + strand at 744.973 kb on + strand at 744.973 kb on + strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 744.974 kb on - strand at 745.162 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.171 kb on + strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.172 kb on - strand at 745.204 kb on + strand at 745.205 kb on - strand at 745.205 kb on - strand at 745.281 kb on + strand at 745.282 kb on - strand at 745.282 kb on - strand at 745.282 kb on - strand at 745.474 kb on - strand, within MPMX19_03369 at 745.474 kb on - strand, within MPMX19_03369 at 745.608 kb on + strand, within MPMX19_03369 at 745.609 kb on - strand, within MPMX19_03369 at 746.039 kb on + strand at 746.040 kb on - strand at 746.040 kb on - strand at 746.551 kb on + strand at 746.551 kb on + strand at 746.552 kb on - strand at 746.552 kb on - strand at 746.552 kb on - strand at 746.573 kb on - strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.737 kb on + strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.738 kb on - strand, within MPMX19_03371 at 746.776 kb on + strand, within MPMX19_03371 at 746.776 kb on + strand, within MPMX19_03371 at 746.777 kb on - strand, within MPMX19_03371 at 746.777 kb on - strand, within MPMX19_03371 at 746.777 kb on - strand, within MPMX19_03371 at 747.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 744,404 + MPMX19_03368 0.73 +0.5 744,404 + MPMX19_03368 0.73 +0.1 744,404 + MPMX19_03368 0.73 +0.9 744,405 - MPMX19_03368 0.73 -1.6 744,436 + MPMX19_03368 0.74 -0.2 744,436 + MPMX19_03368 0.74 +0.4 744,437 - MPMX19_03368 0.74 +0.9 744,437 - MPMX19_03368 0.74 +0.2 744,973 + +0.6 744,973 + -0.7 744,973 + -1.1 744,973 + +0.7 744,974 - +0.1 744,974 - -0.1 744,974 - +1.1 744,974 - +0.0 744,974 - -0.8 744,974 - +0.6 744,974 - -0.1 744,974 - +0.4 744,974 - -1.0 745,162 + -0.8 745,171 + -0.5 745,171 + -0.4 745,171 + -0.8 745,171 + -0.9 745,171 + +0.1 745,171 + +1.3 745,171 + -0.7 745,171 + -0.3 745,171 + -2.1 745,171 + -0.1 745,171 + +0.1 745,171 + -0.8 745,171 + +0.2 745,171 + -0.3 745,171 + +3.7 745,171 + +0.3 745,171 + -0.6 745,171 + -1.5 745,171 + -0.9 745,172 - -0.2 745,172 - -1.5 745,172 - -0.0 745,172 - +0.4 745,172 - -0.4 745,172 - -0.8 745,172 - -0.4 745,172 - -0.1 745,172 - +1.2 745,172 - +0.4 745,172 - -0.0 745,172 - +0.1 745,172 - +0.8 745,172 - +0.9 745,172 - -1.3 745,172 - -0.1 745,172 - -0.7 745,172 - -1.5 745,204 + +0.6 745,205 - +0.2 745,205 - -0.1 745,281 + -0.9 745,282 - +1.1 745,282 - -0.5 745,282 - +0.1 745,474 - MPMX19_03369 0.26 -0.1 745,474 - MPMX19_03369 0.26 -1.5 745,608 + MPMX19_03369 0.43 -2.5 745,609 - MPMX19_03369 0.43 -0.7 746,039 + +0.2 746,040 - -1.1 746,040 - -1.8 746,551 + -0.5 746,551 + -0.4 746,552 - -1.3 746,552 - -1.3 746,552 - -0.9 746,573 - MPMX19_03371 0.13 +0.8 746,737 + MPMX19_03371 0.56 +0.8 746,737 + MPMX19_03371 0.56 -1.2 746,737 + MPMX19_03371 0.56 +0.7 746,737 + MPMX19_03371 0.56 -0.5 746,738 - MPMX19_03371 0.56 +0.1 746,738 - MPMX19_03371 0.56 -0.2 746,738 - MPMX19_03371 0.56 +0.0 746,738 - MPMX19_03371 0.56 -0.8 746,776 + MPMX19_03371 0.66 -0.3 746,776 + MPMX19_03371 0.66 -0.3 746,777 - MPMX19_03371 0.66 -0.5 746,777 - MPMX19_03371 0.66 +0.3 746,777 - MPMX19_03371 0.66 +1.1 747,034 - +0.9
Or see this region's nucleotide sequence