Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03237

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03235 and MPMX19_03236 are separated by 164 nucleotidesMPMX19_03236 and MPMX19_03237 overlap by 4 nucleotidesMPMX19_03237 and MPMX19_03238 are separated by 15 nucleotides MPMX19_03235: MPMX19_03235 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 538,244 to 539,056 _03235 MPMX19_03236: MPMX19_03236 - Protein MbtH, at 539,221 to 539,436 _03236 MPMX19_03237: MPMX19_03237 - Linear gramicidin dehydrogenase LgrE, at 539,433 to 540,182 _03237 MPMX19_03238: MPMX19_03238 - hypothetical protein, at 540,198 to 541,208 _03238 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2at 538.590 kb on - strand, within MPMX19_03235at 538.590 kb on - strand, within MPMX19_03235at 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 539.109 kb on + strandat 539.110 kb on - strandat 539.138 kb on - strandat 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.362 kb on + strand, within MPMX19_03236at 539.363 kb on - strand, within MPMX19_03236at 539.363 kb on - strand, within MPMX19_03236at 539.502 kb on + strandat 539.503 kb on - strandat 539.503 kb on - strandat 539.503 kb on - strandat 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.962 kb on - strand, within MPMX19_03237at 539.967 kb on + strand, within MPMX19_03237at 539.967 kb on + strand, within MPMX19_03237at 540.059 kb on - strand, within MPMX19_03237at 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.418 kb on + strand, within MPMX19_03238at 540.419 kb on - strand, within MPMX19_03238at 540.419 kb on - strand, within MPMX19_03238at 540.468 kb on + strand, within MPMX19_03238at 540.468 kb on + strand, within MPMX19_03238at 540.469 kb on - strand, within MPMX19_03238at 540.513 kb on + strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.514 kb on - strand, within MPMX19_03238at 540.529 kb on - strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.570 kb on + strand, within MPMX19_03238at 540.571 kb on - strand, within MPMX19_03238at 540.571 kb on - strand, within MPMX19_03238at 540.571 kb on - strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.717 kb on + strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.718 kb on - strand, within MPMX19_03238at 540.729 kb on + strand, within MPMX19_03238at 540.729 kb on + strand, within MPMX19_03238at 540.729 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.798 kb on + strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 540.799 kb on - strand, within MPMX19_03238at 541.008 kb on + strand, within MPMX19_03238at 541.008 kb on + strand, within MPMX19_03238at 541.009 kb on - strand, within MPMX19_03238

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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538,590 - MPMX19_03235 0.43 +0.4
538,590 - MPMX19_03235 0.43 -1.5
538,991 + -0.1
538,991 + -0.9
538,991 + -2.4
538,991 + +0.8
538,991 + +0.6
538,991 + +1.5
538,991 + -0.3
538,991 + +1.2
538,991 + -0.9
538,992 - +0.1
538,992 - -0.1
538,992 - -2.5
538,992 - +1.7
539,109 + -1.7
539,110 - -0.3
539,138 - +0.2
539,278 + MPMX19_03236 0.26 -0.7
539,278 + MPMX19_03236 0.26 +0.3
539,278 + MPMX19_03236 0.26 +0.4
539,278 + MPMX19_03236 0.26 +0.5
539,278 + MPMX19_03236 0.26 -0.6
539,278 + MPMX19_03236 0.26 -0.1
539,278 + MPMX19_03236 0.26 +0.5
539,279 - MPMX19_03236 0.27 -0.8
539,279 - MPMX19_03236 0.27 -1.1
539,279 - MPMX19_03236 0.27 -0.1
539,279 - MPMX19_03236 0.27 -0.2
539,296 + MPMX19_03236 0.35 -0.5
539,296 + MPMX19_03236 0.35 +1.5
539,296 + MPMX19_03236 0.35 +0.5
539,296 + MPMX19_03236 0.35 -1.7
539,296 + MPMX19_03236 0.35 +0.3
539,296 + MPMX19_03236 0.35 -0.8
539,296 + MPMX19_03236 0.35 -0.1
539,296 + MPMX19_03236 0.35 +0.4
539,297 - MPMX19_03236 0.35 +0.6
539,297 - MPMX19_03236 0.35 +0.6
539,297 - MPMX19_03236 0.35 +0.9
539,297 - MPMX19_03236 0.35 -0.5
539,297 - MPMX19_03236 0.35 -0.3
539,297 - MPMX19_03236 0.35 -0.1
539,297 - MPMX19_03236 0.35 +0.3
539,362 + MPMX19_03236 0.65 -1.1
539,363 - MPMX19_03236 0.66 +0.7
539,363 - MPMX19_03236 0.66 +2.2
539,502 + +1.9
539,503 - -0.1
539,503 - +0.4
539,503 - -1.1
539,526 + MPMX19_03237 0.12 +0.1
539,526 + MPMX19_03237 0.12 -1.3
539,526 + MPMX19_03237 0.12 +0.0
539,526 + MPMX19_03237 0.12 +1.0
539,526 + MPMX19_03237 0.12 +0.7
539,526 + MPMX19_03237 0.12 +0.5
539,526 + MPMX19_03237 0.12 +0.8
539,526 + MPMX19_03237 0.12 -0.1
539,526 + MPMX19_03237 0.12 +0.5
539,526 + MPMX19_03237 0.12 -1.1
539,527 - MPMX19_03237 0.13 -0.5
539,527 - MPMX19_03237 0.13 -0.3
539,527 - MPMX19_03237 0.13 +0.7
539,527 - MPMX19_03237 0.13 -1.8
539,527 - MPMX19_03237 0.13 +0.5
539,527 - MPMX19_03237 0.13 +0.3
539,962 - MPMX19_03237 0.71 +0.8
539,967 + MPMX19_03237 0.71 +0.1
539,967 + MPMX19_03237 0.71 +1.5
540,059 - MPMX19_03237 0.83 -1.0
540,209 + +0.2
540,209 + -1.5
540,209 + +1.1
540,209 + +0.1
540,209 + -1.8
540,210 - -1.7
540,210 - +0.1
540,210 - +0.2
540,210 - +0.6
540,210 - -0.5
540,210 - -2.3
540,210 - -0.7
540,210 - -0.1
540,210 - +0.3
540,418 + MPMX19_03238 0.22 +0.9
540,419 - MPMX19_03238 0.22 -1.0
540,419 - MPMX19_03238 0.22 -0.7
540,468 + MPMX19_03238 0.27 -0.8
540,468 + MPMX19_03238 0.27 -0.5
540,469 - MPMX19_03238 0.27 +0.6
540,513 + MPMX19_03238 0.31 -1.1
540,514 - MPMX19_03238 0.31 +1.8
540,514 - MPMX19_03238 0.31 -0.8
540,514 - MPMX19_03238 0.31 +1.0
540,514 - MPMX19_03238 0.31 +1.2
540,529 - MPMX19_03238 0.33 -0.1
540,570 + MPMX19_03238 0.37 +0.1
540,570 + MPMX19_03238 0.37 -0.5
540,570 + MPMX19_03238 0.37 +0.3
540,570 + MPMX19_03238 0.37 -1.4
540,570 + MPMX19_03238 0.37 -0.8
540,571 - MPMX19_03238 0.37 -0.9
540,571 - MPMX19_03238 0.37 +1.1
540,571 - MPMX19_03238 0.37 -1.7
540,717 + MPMX19_03238 0.51 -1.1
540,717 + MPMX19_03238 0.51 +0.5
540,717 + MPMX19_03238 0.51 -0.1
540,717 + MPMX19_03238 0.51 +0.3
540,717 + MPMX19_03238 0.51 -0.4
540,717 + MPMX19_03238 0.51 -0.0
540,717 + MPMX19_03238 0.51 -1.3
540,717 + MPMX19_03238 0.51 -1.0
540,717 + MPMX19_03238 0.51 +0.3
540,717 + MPMX19_03238 0.51 -2.3
540,717 + MPMX19_03238 0.51 -1.2
540,717 + MPMX19_03238 0.51 +0.5
540,717 + MPMX19_03238 0.51 -0.2
540,717 + MPMX19_03238 0.51 -0.7
540,717 + MPMX19_03238 0.51 +0.6
540,717 + MPMX19_03238 0.51 +0.7
540,717 + MPMX19_03238 0.51 -0.7
540,717 + MPMX19_03238 0.51 +0.3
540,717 + MPMX19_03238 0.51 +0.2
540,717 + MPMX19_03238 0.51 -1.3
540,717 + MPMX19_03238 0.51 +0.8
540,717 + MPMX19_03238 0.51 -0.7
540,717 + MPMX19_03238 0.51 -0.8
540,717 + MPMX19_03238 0.51 -0.4
540,717 + MPMX19_03238 0.51 -0.7
540,718 - MPMX19_03238 0.51 -0.5
540,718 - MPMX19_03238 0.51 +0.7
540,718 - MPMX19_03238 0.51 +0.4
540,718 - MPMX19_03238 0.51 -0.5
540,718 - MPMX19_03238 0.51 -1.3
540,718 - MPMX19_03238 0.51 -0.7
540,718 - MPMX19_03238 0.51 -1.4
540,718 - MPMX19_03238 0.51 +0.7
540,718 - MPMX19_03238 0.51 -0.1
540,718 - MPMX19_03238 0.51 -0.5
540,718 - MPMX19_03238 0.51 +0.5
540,718 - MPMX19_03238 0.51 +0.1
540,718 - MPMX19_03238 0.51 +0.0
540,718 - MPMX19_03238 0.51 -0.0
540,718 - MPMX19_03238 0.51 +0.5
540,718 - MPMX19_03238 0.51 +0.5
540,718 - MPMX19_03238 0.51 +1.0
540,718 - MPMX19_03238 0.51 -0.1
540,718 - MPMX19_03238 0.51 -1.1
540,718 - MPMX19_03238 0.51 -0.6
540,718 - MPMX19_03238 0.51 +1.5
540,729 + MPMX19_03238 0.53 -2.5
540,729 + MPMX19_03238 0.53 +1.1
540,729 + MPMX19_03238 0.53 +1.4
540,798 + MPMX19_03238 0.59 +1.9
540,798 + MPMX19_03238 0.59 +0.3
540,798 + MPMX19_03238 0.59 -0.9
540,798 + MPMX19_03238 0.59 -0.1
540,798 + MPMX19_03238 0.59 -0.3
540,799 - MPMX19_03238 0.59 -0.7
540,799 - MPMX19_03238 0.59 -0.1
540,799 - MPMX19_03238 0.59 +0.4
540,799 - MPMX19_03238 0.59 +0.4
540,799 - MPMX19_03238 0.59 +0.2
540,799 - MPMX19_03238 0.59 -0.6
541,008 + MPMX19_03238 0.80 -1.1
541,008 + MPMX19_03238 0.80 -0.2
541,009 - MPMX19_03238 0.80 +0.5

Or see this region's nucleotide sequence