Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02556 and MPMX19_02557 are separated by 92 nucleotides MPMX19_02557 and MPMX19_02558 are separated by 436 nucleotides
MPMX19_02556: MPMX19_02556 - Ferrochelatase, at 2,671,947 to 2,673,101
_02556
MPMX19_02557: MPMX19_02557 - Uroporphyrinogen decarboxylase, at 2,673,194 to 2,674,297
_02557
MPMX19_02558: MPMX19_02558 - Putative pyruvate, phosphate dikinase regulatory protein, at 2,674,734 to 2,675,573
_02558
Position (kb)
2673
2674
2675 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2673.112 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2673.170 kb on - strand at 2674.361 kb on - strand at 2674.361 kb on - strand at 2674.361 kb on - strand at 2674.378 kb on - strand at 2674.378 kb on - strand at 2674.378 kb on - strand at 2674.380 kb on - strand at 2674.380 kb on - strand at 2674.750 kb on + strand at 2674.750 kb on + strand at 2674.750 kb on + strand at 2674.750 kb on + strand at 2674.750 kb on + strand at 2674.750 kb on + strand at 2674.750 kb on + strand at 2674.750 kb on + strand at 2675.085 kb on + strand, within MPMX19_02558 at 2675.214 kb on + strand, within MPMX19_02558 at 2675.214 kb on + strand, within MPMX19_02558 at 2675.214 kb on + strand, within MPMX19_02558 at 2675.214 kb on + strand, within MPMX19_02558 at 2675.214 kb on + strand, within MPMX19_02558
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 2,673,112 - -1.7 2,673,170 - -0.0 2,673,170 - -0.1 2,673,170 - +0.4 2,673,170 - +0.8 2,673,170 - -0.9 2,673,170 - -0.7 2,673,170 - +0.2 2,673,170 - +1.2 2,673,170 - -1.8 2,673,170 - -0.4 2,673,170 - +1.2 2,673,170 - +0.1 2,673,170 - -0.2 2,673,170 - -0.5 2,674,361 - -0.9 2,674,361 - +0.5 2,674,361 - +1.6 2,674,378 - +1.8 2,674,378 - +0.2 2,674,378 - -0.4 2,674,380 - -2.2 2,674,380 - -0.4 2,674,750 + -1.8 2,674,750 + +1.8 2,674,750 + -1.1 2,674,750 + -1.2 2,674,750 + +0.9 2,674,750 + +0.0 2,674,750 + -0.4 2,674,750 + -0.9 2,675,085 + MPMX19_02558 0.42 -0.7 2,675,214 + MPMX19_02558 0.57 +0.2 2,675,214 + MPMX19_02558 0.57 -1.1 2,675,214 + MPMX19_02558 0.57 -1.2 2,675,214 + MPMX19_02558 0.57 +0.4 2,675,214 + MPMX19_02558 0.57 -2.2
Or see this region's nucleotide sequence