Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00692 and MPMX19_00693 are separated by 243 nucleotides MPMX19_00693 and MPMX19_00694 are separated by 123 nucleotides MPMX19_00694 and MPMX19_00695 are separated by 172 nucleotides MPMX19_00695 and MPMX19_00696 are separated by 36 nucleotides
MPMX19_00692: MPMX19_00692 - hypothetical protein, at 714,800 to 715,108
_00692
MPMX19_00693: MPMX19_00693 - 5-formyltetrahydrofolate cyclo-ligase, at 715,352 to 715,942
_00693
MPMX19_00694: MPMX19_00694 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 716,066 to 716,890
_00694
MPMX19_00695: MPMX19_00695 - putative transcriptional regulatory protein, at 717,063 to 717,815
_00695
MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940
_00696
Position (kb) 716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.115 kb on - strand at 715.115 kb on - strand at 715.115 kb on - strand at 715.152 kb on + strand at 715.152 kb on + strand at 715.152 kb on + strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.181 kb on + strand at 715.181 kb on + strand at 715.181 kb on + strand at 715.182 kb on - strand at 715.182 kb on - strand at 715.182 kb on - strand at 715.216 kb on + strand at 715.217 kb on - strand at 715.217 kb on - strand at 715.253 kb on + strand at 715.254 kb on - strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.260 kb on - strand at 715.260 kb on - strand at 715.292 kb on + strand at 715.292 kb on + strand at 715.292 kb on + strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.511 kb on + strand, within MPMX19_00693 at 715.511 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.665 kb on - strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.764 kb on - strand, within MPMX19_00693 at 715.775 kb on + strand, within MPMX19_00693 at 715.776 kb on - strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.947 kb on + strand at 715.947 kb on + strand at 715.947 kb on + strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.964 kb on + strand at 715.964 kb on + strand at 715.965 kb on - strand at 715.981 kb on + strand at 715.981 kb on + strand at 715.982 kb on - strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.984 kb on - strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.336 kb on + strand, within MPMX19_00694 at 716.337 kb on - strand, within MPMX19_00694 at 716.363 kb on + strand, within MPMX19_00694 at 716.364 kb on - strand, within MPMX19_00694 at 716.364 kb on - strand, within MPMX19_00694 at 716.681 kb on + strand, within MPMX19_00694 at 716.681 kb on + strand, within MPMX19_00694 at 716.682 kb on - strand, within MPMX19_00694 at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.932 kb on + strand at 716.933 kb on - strand at 716.933 kb on - strand at 716.933 kb on - strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.324 kb on + strand, within MPMX19_00695 at 717.333 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 715,106 + -0.0 715,106 + -1.2 715,106 + -0.4 715,106 + +0.4 715,106 + -0.9 715,106 + -1.2 715,107 - -1.0 715,107 - +0.2 715,107 - +0.3 715,107 - -0.4 715,107 - -0.0 715,107 - -1.0 715,107 - +1.0 715,107 - -0.3 715,107 - -1.4 715,114 + -0.4 715,114 + -0.6 715,114 + -0.5 715,114 + +0.6 715,114 + +0.8 715,114 + +0.7 715,114 + +0.6 715,115 - +0.6 715,115 - +0.6 715,115 - +0.1 715,152 + -1.1 715,152 + +0.1 715,152 + -0.9 715,153 - +0.4 715,153 - -0.8 715,153 - -1.4 715,153 - -0.4 715,153 - +0.8 715,153 - -1.5 715,153 - +0.6 715,153 - -0.0 715,153 - -1.9 715,153 - +0.2 715,153 - -0.0 715,153 - -0.4 715,181 + +1.0 715,181 + +0.6 715,181 + +1.1 715,182 - -1.0 715,182 - +0.6 715,182 - -0.0 715,216 + -1.0 715,217 - +2.0 715,217 - +0.6 715,253 + -1.6 715,254 - +0.6 715,259 + -1.0 715,259 + -0.0 715,259 + -0.4 715,259 + -0.8 715,259 + +0.3 715,259 + +2.6 715,259 + -1.9 715,260 - -0.2 715,260 - -0.4 715,292 + -0.8 715,292 + -1.1 715,292 + -0.4 715,293 - +0.4 715,293 - -1.0 715,293 - -0.0 715,293 - -1.9 715,293 - -0.0 715,511 + MPMX19_00693 0.27 -0.3 715,511 + MPMX19_00693 0.27 +0.1 715,561 + MPMX19_00693 0.35 +0.4 715,561 + MPMX19_00693 0.35 -1.6 715,561 + MPMX19_00693 0.35 -0.8 715,561 + MPMX19_00693 0.35 +0.0 715,561 + MPMX19_00693 0.35 -0.3 715,561 + MPMX19_00693 0.35 +0.6 715,561 + MPMX19_00693 0.35 -1.2 715,561 + MPMX19_00693 0.35 +0.1 715,561 + MPMX19_00693 0.35 -0.9 715,562 - MPMX19_00693 0.36 -1.2 715,562 - MPMX19_00693 0.36 +0.7 715,562 - MPMX19_00693 0.36 -0.3 715,562 - MPMX19_00693 0.36 -1.4 715,562 - MPMX19_00693 0.36 +0.1 715,665 - MPMX19_00693 0.53 -1.4 715,763 + MPMX19_00693 0.70 +0.2 715,763 + MPMX19_00693 0.70 -1.2 715,763 + MPMX19_00693 0.70 -0.6 715,764 - MPMX19_00693 0.70 +1.1 715,775 + MPMX19_00693 0.72 -0.3 715,776 - MPMX19_00693 0.72 -0.3 715,778 + MPMX19_00693 0.72 +0.1 715,778 + MPMX19_00693 0.72 -0.0 715,778 + MPMX19_00693 0.72 -1.3 715,778 + MPMX19_00693 0.72 +0.8 715,778 + MPMX19_00693 0.72 -1.0 715,778 + MPMX19_00693 0.72 +0.4 715,778 + MPMX19_00693 0.72 +0.7 715,778 + MPMX19_00693 0.72 -0.7 715,778 + MPMX19_00693 0.72 +0.3 715,778 + MPMX19_00693 0.72 -0.3 715,779 - MPMX19_00693 0.72 -0.4 715,779 - MPMX19_00693 0.72 +1.1 715,779 - MPMX19_00693 0.72 +1.6 715,779 - MPMX19_00693 0.72 +0.2 715,779 - MPMX19_00693 0.72 -0.4 715,779 - MPMX19_00693 0.72 +0.7 715,936 + +0.2 715,936 + +0.4 715,936 + +0.3 715,936 + +0.2 715,936 + +0.1 715,936 + -2.3 715,936 + -0.6 715,936 + +0.3 715,936 + -0.4 715,936 + +0.4 715,936 + +0.4 715,936 + -1.1 715,936 + -0.9 715,936 + -1.0 715,936 + +0.3 715,936 + -1.4 715,936 + +0.3 715,936 + -1.0 715,937 - +0.6 715,937 - -0.4 715,937 - +0.6 715,937 - +0.1 715,937 - +1.0 715,937 - -0.6 715,937 - +0.6 715,937 - +2.3 715,937 - +0.2 715,937 - -0.2 715,937 - -1.4 715,937 - -1.7 715,945 + -0.2 715,945 + -0.0 715,945 + +0.1 715,945 + +0.4 715,945 + -0.5 715,945 + -1.1 715,945 + +0.7 715,945 + -0.3 715,945 + -0.6 715,945 + +0.7 715,946 - -0.0 715,946 - -0.0 715,946 - +1.0 715,946 - -0.4 715,947 + -0.6 715,947 + -1.0 715,947 + -1.7 715,948 - -1.3 715,948 - +0.2 715,948 - -1.0 715,948 - -0.8 715,961 + -0.0 715,961 + +0.6 715,961 + -0.9 715,961 + -1.5 715,961 + -0.9 715,961 + -0.5 715,962 - +1.0 715,962 - -0.2 715,962 - -0.7 715,962 - -0.2 715,964 + -0.4 715,964 + -0.3 715,965 - +1.2 715,981 + +0.1 715,981 + -0.3 715,982 - +1.1 715,983 + +0.8 715,983 + -0.8 715,983 + -0.6 715,983 + -0.8 715,983 + -0.2 715,983 + -1.8 715,983 + -0.2 715,983 + +1.0 715,983 + +0.5 715,983 + -0.0 715,984 - -0.8 716,046 + +2.1 716,046 + +1.3 716,046 + -1.4 716,046 + -0.8 716,046 + +0.2 716,129 - -0.2 716,129 - -0.4 716,129 - -0.4 716,129 - +0.2 716,129 - -1.2 716,269 + MPMX19_00694 0.25 -1.4 716,269 + MPMX19_00694 0.25 +1.0 716,269 + MPMX19_00694 0.25 +0.6 716,269 + MPMX19_00694 0.25 +0.2 716,269 + MPMX19_00694 0.25 +0.2 716,269 + MPMX19_00694 0.25 -0.0 716,270 - MPMX19_00694 0.25 -1.2 716,270 - MPMX19_00694 0.25 -0.8 716,270 - MPMX19_00694 0.25 -1.2 716,336 + MPMX19_00694 0.33 -1.0 716,337 - MPMX19_00694 0.33 +1.0 716,363 + MPMX19_00694 0.36 -1.2 716,364 - MPMX19_00694 0.36 +0.6 716,364 - MPMX19_00694 0.36 -0.6 716,681 + MPMX19_00694 0.75 +0.2 716,681 + MPMX19_00694 0.75 +0.2 716,682 - MPMX19_00694 0.75 -0.0 716,888 + +0.2 716,888 + +0.6 716,888 + -0.2 716,888 + +1.1 716,888 + -0.2 716,889 - -0.0 716,889 - +0.4 716,889 - +0.7 716,889 - +1.3 716,889 - +0.6 716,932 + +0.2 716,933 - -0.4 716,933 - -0.0 716,933 - -1.7 716,943 + -0.4 716,943 + -0.4 716,943 + +0.2 716,943 + +0.1 716,943 + +0.6 716,944 - +0.1 716,944 - +1.1 716,944 - +2.0 716,944 - -0.4 716,944 - -0.8 716,944 - +1.5 716,944 - -3.5 717,000 + +0.3 717,000 + -0.0 717,000 + -0.4 717,000 + -0.9 717,000 + -0.9 717,000 + -0.4 717,000 + +0.4 717,000 + -0.1 717,000 + +0.7 717,000 + -0.4 717,000 + -0.5 717,000 + -0.9 717,000 + +0.1 717,000 + -1.2 717,000 + -0.4 717,000 + +0.7 717,000 + +0.3 717,000 + +1.2 717,000 + -0.2 717,000 + +0.6 717,000 + -0.4 717,000 + -0.8 717,000 + -0.6 717,000 + +0.4 717,000 + -1.0 717,000 + -1.5 717,000 + +0.8 717,000 + +0.8 717,000 + -0.0 717,000 + -1.4 717,309 + MPMX19_00695 0.33 -0.6 717,309 + MPMX19_00695 0.33 -0.4 717,309 + MPMX19_00695 0.33 -0.0 717,309 + MPMX19_00695 0.33 -2.1 717,324 + MPMX19_00695 0.35 -1.1 717,333 + MPMX19_00695 0.36 +0.2 717,423 + MPMX19_00695 0.48 +0.9 717,423 + MPMX19_00695 0.48 -0.7 717,423 + MPMX19_00695 0.48 -0.8 717,423 + MPMX19_00695 0.48 +1.6
Or see this region's nucleotide sequence