Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00568 and MPMX19_00569 are separated by 379 nucleotides MPMX19_00569 and MPMX19_00570 are separated by 90 nucleotides
MPMX19_00568: MPMX19_00568 - Methyl-accepting chemotaxis protein, at 582,795 to 584,063
_00568
MPMX19_00569: MPMX19_00569 - hypothetical protein, at 584,443 to 585,489
_00569
MPMX19_00570: MPMX19_00570 - L-Ala-D/L-Glu epimerase, at 585,580 to 586,572
_00570
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 584.176 kb on + strand at 584.213 kb on + strand at 584.213 kb on + strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.254 kb on + strand at 584.255 kb on - strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.260 kb on - strand at 584.260 kb on - strand at 584.280 kb on + strand at 584.280 kb on + strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.313 kb on + strand at 584.314 kb on - strand at 584.314 kb on - strand at 584.387 kb on - strand at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 585.007 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.142 kb on + strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.143 kb on - strand, within MPMX19_00569 at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.388 kb on + strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.389 kb on - strand at 585.436 kb on + strand at 585.437 kb on - strand at 585.437 kb on - strand at 585.437 kb on - strand at 585.437 kb on - strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.445 kb on + strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.446 kb on - strand at 585.493 kb on + strand at 585.493 kb on + strand at 585.493 kb on + strand at 585.494 kb on - strand at 585.503 kb on + strand at 585.503 kb on + strand at 585.503 kb on + strand at 585.504 kb on - strand at 585.504 kb on - strand at 585.504 kb on - strand at 585.504 kb on - strand at 585.504 kb on - strand at 585.504 kb on - strand at 585.504 kb on - strand at 585.504 kb on - strand at 585.525 kb on - strand at 585.542 kb on + strand at 585.542 kb on + strand at 585.542 kb on + strand at 585.727 kb on + strand, within MPMX19_00570 at 585.728 kb on - strand, within MPMX19_00570 at 585.736 kb on + strand, within MPMX19_00570 at 585.737 kb on - strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 586.306 kb on + strand, within MPMX19_00570 at 586.306 kb on + strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 584,176 + -2.2 584,213 + -0.8 584,213 + -0.3 584,214 - -0.8 584,214 - -1.0 584,214 - +1.0 584,214 - -0.8 584,214 - -3.3 584,254 + -0.8 584,255 - +0.2 584,259 + +0.7 584,259 + -0.9 584,259 + -1.9 584,259 + -1.6 584,259 + -1.4 584,259 + -1.3 584,259 + -0.3 584,259 + -1.3 584,260 - -0.2 584,260 - +0.6 584,280 + +1.0 584,280 + -0.2 584,281 - -1.4 584,281 - -0.4 584,281 - -1.8 584,281 - -0.8 584,281 - -1.9 584,313 + +0.1 584,314 - -0.2 584,314 - -0.2 584,387 - +0.1 584,812 + MPMX19_00569 0.35 +0.4 584,812 + MPMX19_00569 0.35 -0.6 584,812 + MPMX19_00569 0.35 +0.2 584,812 + MPMX19_00569 0.35 -0.8 584,812 + MPMX19_00569 0.35 -0.2 584,812 + MPMX19_00569 0.35 -0.2 584,812 + MPMX19_00569 0.35 -0.8 584,812 + MPMX19_00569 0.35 -0.8 584,813 - MPMX19_00569 0.35 +0.1 584,813 - MPMX19_00569 0.35 +0.1 584,813 - MPMX19_00569 0.35 +0.4 584,813 - MPMX19_00569 0.35 +0.9 584,813 - MPMX19_00569 0.35 +0.1 584,813 - MPMX19_00569 0.35 -0.0 584,813 - MPMX19_00569 0.35 -1.0 584,813 - MPMX19_00569 0.35 -1.6 584,813 - MPMX19_00569 0.35 -1.4 584,813 - MPMX19_00569 0.35 -0.5 584,813 - MPMX19_00569 0.35 +0.8 584,813 - MPMX19_00569 0.35 -1.3 584,813 - MPMX19_00569 0.35 -0.8 584,813 - MPMX19_00569 0.35 -0.7 584,813 - MPMX19_00569 0.35 -2.2 584,813 - MPMX19_00569 0.35 -2.4 584,935 + MPMX19_00569 0.47 +1.0 584,935 + MPMX19_00569 0.47 +1.6 584,935 + MPMX19_00569 0.47 -1.1 584,935 + MPMX19_00569 0.47 -2.6 584,935 + MPMX19_00569 0.47 -0.6 584,935 + MPMX19_00569 0.47 -0.7 584,935 + MPMX19_00569 0.47 +0.2 584,935 + MPMX19_00569 0.47 -1.0 584,935 + MPMX19_00569 0.47 +1.0 584,935 + MPMX19_00569 0.47 +0.4 584,935 + MPMX19_00569 0.47 -0.5 584,935 + MPMX19_00569 0.47 -0.6 584,935 + MPMX19_00569 0.47 -0.8 584,936 - MPMX19_00569 0.47 -1.0 584,936 - MPMX19_00569 0.47 -0.4 584,936 - MPMX19_00569 0.47 -1.4 584,936 - MPMX19_00569 0.47 +0.7 584,936 - MPMX19_00569 0.47 -0.6 584,936 - MPMX19_00569 0.47 +0.8 584,936 - MPMX19_00569 0.47 -0.2 584,936 - MPMX19_00569 0.47 -0.2 584,936 - MPMX19_00569 0.47 -0.8 584,944 + MPMX19_00569 0.48 -1.1 584,944 + MPMX19_00569 0.48 -0.9 584,944 + MPMX19_00569 0.48 +0.2 584,944 + MPMX19_00569 0.48 -0.2 584,944 + MPMX19_00569 0.48 +0.3 584,944 + MPMX19_00569 0.48 +0.2 584,945 - MPMX19_00569 0.48 +0.3 584,945 - MPMX19_00569 0.48 -0.4 584,945 - MPMX19_00569 0.48 -0.0 584,945 - MPMX19_00569 0.48 +0.4 585,007 + MPMX19_00569 0.54 -0.4 585,142 + MPMX19_00569 0.67 -0.2 585,142 + MPMX19_00569 0.67 -1.1 585,142 + MPMX19_00569 0.67 -0.8 585,142 + MPMX19_00569 0.67 -0.2 585,142 + MPMX19_00569 0.67 -0.8 585,142 + MPMX19_00569 0.67 -2.5 585,142 + MPMX19_00569 0.67 -0.1 585,142 + MPMX19_00569 0.67 -1.4 585,142 + MPMX19_00569 0.67 +1.2 585,142 + MPMX19_00569 0.67 -0.4 585,142 + MPMX19_00569 0.67 +1.0 585,143 - MPMX19_00569 0.67 +0.6 585,143 - MPMX19_00569 0.67 -0.8 585,143 - MPMX19_00569 0.67 -1.2 585,143 - MPMX19_00569 0.67 -0.8 585,143 - MPMX19_00569 0.67 -0.4 585,143 - MPMX19_00569 0.67 -0.2 585,143 - MPMX19_00569 0.67 +1.6 585,143 - MPMX19_00569 0.67 -0.8 585,143 - MPMX19_00569 0.67 +0.6 585,143 - MPMX19_00569 0.67 -0.4 585,143 - MPMX19_00569 0.67 -0.4 585,143 - MPMX19_00569 0.67 +0.1 585,143 - MPMX19_00569 0.67 -0.4 585,143 - MPMX19_00569 0.67 +1.2 585,143 - MPMX19_00569 0.67 -1.2 585,143 - MPMX19_00569 0.67 -0.9 585,143 - MPMX19_00569 0.67 -0.3 585,388 + -0.1 585,388 + -0.1 585,388 + -1.8 585,388 + -0.8 585,388 + +0.2 585,388 + +0.3 585,388 + +0.5 585,388 + -0.1 585,388 + -0.6 585,388 + -0.8 585,388 + +1.0 585,388 + +0.4 585,388 + -1.0 585,388 + -0.9 585,388 + +0.6 585,389 - -1.0 585,389 - +0.5 585,389 - -1.6 585,389 - +1.2 585,389 - -1.0 585,389 - +0.2 585,389 - +0.8 585,389 - -0.0 585,389 - +0.2 585,389 - -0.3 585,389 - -0.7 585,389 - +0.4 585,389 - +1.3 585,389 - -0.7 585,389 - -0.1 585,389 - -1.4 585,389 - -0.2 585,389 - -0.6 585,389 - +0.1 585,389 - -0.6 585,389 - -1.2 585,389 - -2.0 585,389 - -0.0 585,389 - +0.6 585,389 - -2.4 585,389 - -0.2 585,389 - -1.0 585,389 - -0.8 585,389 - -1.2 585,389 - +1.1 585,389 - -1.7 585,436 + +2.6 585,437 - -0.2 585,437 - -0.6 585,437 - -0.6 585,437 - -0.0 585,445 + -0.7 585,445 + -0.8 585,445 + +1.2 585,445 + -1.6 585,445 + -1.0 585,445 + -1.8 585,445 + -0.3 585,445 + -0.3 585,445 + -0.8 585,445 + -0.3 585,445 + -0.2 585,445 + -0.9 585,445 + +1.3 585,445 + -0.1 585,445 + -0.8 585,445 + +0.4 585,445 + -0.4 585,445 + +0.3 585,445 + -0.6 585,445 + -1.3 585,445 + -0.6 585,445 + -1.3 585,445 + +0.0 585,446 - -1.4 585,446 - -1.2 585,446 - +0.5 585,446 - -0.5 585,446 - -0.2 585,446 - -0.0 585,446 - +0.7 585,446 - -0.4 585,446 - +1.6 585,446 - -0.6 585,446 - +1.2 585,446 - +0.3 585,446 - +0.9 585,446 - +0.3 585,446 - +0.8 585,446 - -0.3 585,446 - -0.8 585,446 - +0.1 585,446 - +0.0 585,446 - +0.6 585,446 - -1.1 585,446 - -0.2 585,446 - +0.2 585,446 - -1.6 585,446 - -0.5 585,446 - +0.3 585,493 + -1.3 585,493 + -0.4 585,493 + -0.8 585,494 - -0.9 585,503 + +0.1 585,503 + -1.4 585,503 + -1.2 585,504 - -2.2 585,504 - -0.3 585,504 - -0.8 585,504 - -0.6 585,504 - -0.8 585,504 - -1.0 585,504 - -0.4 585,504 - -1.0 585,525 - -0.2 585,542 + -2.4 585,542 + -0.8 585,542 + -0.6 585,727 + MPMX19_00570 0.15 -0.4 585,728 - MPMX19_00570 0.15 -0.5 585,736 + MPMX19_00570 0.16 -0.8 585,737 - MPMX19_00570 0.16 -0.5 585,955 + MPMX19_00570 0.38 +0.7 585,955 + MPMX19_00570 0.38 +0.3 585,955 + MPMX19_00570 0.38 -0.4 585,955 + MPMX19_00570 0.38 -0.3 585,955 + MPMX19_00570 0.38 -0.8 585,955 + MPMX19_00570 0.38 +0.2 585,955 + MPMX19_00570 0.38 +1.6 585,955 + MPMX19_00570 0.38 -0.4 585,955 + MPMX19_00570 0.38 -2.1 585,956 - MPMX19_00570 0.38 -0.1 585,956 - MPMX19_00570 0.38 -0.5 585,956 - MPMX19_00570 0.38 +0.3 585,956 - MPMX19_00570 0.38 -1.6 585,956 - MPMX19_00570 0.38 -0.9 586,306 + MPMX19_00570 0.73 -0.6 586,306 + MPMX19_00570 0.73 -0.4 586,307 - MPMX19_00570 0.73 -0.2 586,307 - MPMX19_00570 0.73 +0.1 586,468 + MPMX19_00570 0.89 +0.3 586,468 + MPMX19_00570 0.89 -0.3 586,468 + MPMX19_00570 0.89 +0.9 586,468 + MPMX19_00570 0.89 -0.8 586,468 + MPMX19_00570 0.89 +0.3 586,468 + MPMX19_00570 0.89 -1.2 586,468 + MPMX19_00570 0.89 +0.8 586,469 - MPMX19_00570 0.90 -0.0 586,469 - MPMX19_00570 0.90 -0.2 586,469 - MPMX19_00570 0.90 -2.9 586,469 - MPMX19_00570 0.90 -1.6 586,469 - MPMX19_00570 0.90 +0.6 586,469 - MPMX19_00570 0.90 -0.2 586,469 - MPMX19_00570 0.90 -0.9 586,469 - MPMX19_00570 0.90 -0.2 586,469 - MPMX19_00570 0.90 -0.2 586,469 - MPMX19_00570 0.90 -0.5
Or see this region's nucleotide sequence