Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00341

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00340 and MPMX19_00341 are separated by 71 nucleotidesMPMX19_00341 and MPMX19_00342 are separated by 18 nucleotides MPMX19_00340: MPMX19_00340 - Penicillin-binding protein 1A, at 346,133 to 348,670 _00340 MPMX19_00341: MPMX19_00341 - hypothetical protein, at 348,742 to 349,866 _00341 MPMX19_00342: MPMX19_00342 - Peptidoglycan O-acetyltransferase, at 349,885 to 351,321 _00342 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.989 kb on + strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.990 kb on - strand, within MPMX19_00341at 348.991 kb on - strand, within MPMX19_00341at 349.001 kb on + strand, within MPMX19_00341at 349.001 kb on + strand, within MPMX19_00341at 349.001 kb on + strand, within MPMX19_00341at 349.002 kb on - strand, within MPMX19_00341at 349.002 kb on - strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.298 kb on + strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.299 kb on - strand, within MPMX19_00341at 349.301 kb on + strand, within MPMX19_00341at 349.301 kb on + strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.302 kb on - strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.397 kb on + strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.398 kb on - strand, within MPMX19_00341at 349.745 kb on + strand, within MPMX19_00341at 349.745 kb on + strand, within MPMX19_00341at 349.745 kb on + strand, within MPMX19_00341at 349.862 kb on + strandat 349.862 kb on + strandat 349.862 kb on + strandat 349.862 kb on + strandat 349.862 kb on + strandat 349.862 kb on + strandat 349.863 kb on - strandat 349.863 kb on - strandat 349.863 kb on - strandat 349.863 kb on - strandat 349.863 kb on - strandat 349.863 kb on - strandat 349.863 kb on - strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.898 kb on + strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.899 kb on - strandat 349.994 kb on + strandat 349.994 kb on + strandat 349.994 kb on + strandat 349.994 kb on + strandat 349.995 kb on - strandat 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.429 kb on + strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.430 kb on - strand, within MPMX19_00342at 350.435 kb on + strand, within MPMX19_00342at 350.435 kb on + strand, within MPMX19_00342at 350.435 kb on + strand, within MPMX19_00342at 350.435 kb on + strand, within MPMX19_00342at 350.435 kb on + strand, within MPMX19_00342at 350.435 kb on + strand, within MPMX19_00342at 350.435 kb on + strand, within MPMX19_00342at 350.436 kb on - strand, within MPMX19_00342at 350.436 kb on - strand, within MPMX19_00342at 350.436 kb on - strand, within MPMX19_00342at 350.436 kb on - strand, within MPMX19_00342at 350.436 kb on - strand, within MPMX19_00342at 350.436 kb on - strand, within MPMX19_00342at 350.436 kb on - strand, within MPMX19_00342at 350.504 kb on + strand, within MPMX19_00342at 350.504 kb on + strand, within MPMX19_00342at 350.535 kb on - strand, within MPMX19_00342at 350.573 kb on + strand, within MPMX19_00342at 350.574 kb on - strand, within MPMX19_00342at 350.591 kb on + strand, within MPMX19_00342at 350.591 kb on + strand, within MPMX19_00342at 350.591 kb on + strand, within MPMX19_00342at 350.591 kb on + strand, within MPMX19_00342at 350.591 kb on + strand, within MPMX19_00342at 350.592 kb on - strand, within MPMX19_00342at 350.592 kb on - strand, within MPMX19_00342at 350.592 kb on - strand, within MPMX19_00342at 350.592 kb on - strand, within MPMX19_00342at 350.592 kb on - strand, within MPMX19_00342at 350.714 kb on + strand, within MPMX19_00342at 350.715 kb on - strand, within MPMX19_00342at 350.715 kb on - strand, within MPMX19_00342at 350.715 kb on - strand, within MPMX19_00342at 350.715 kb on - strand, within MPMX19_00342at 350.715 kb on - strand, within MPMX19_00342at 350.858 kb on + strand, within MPMX19_00342at 350.859 kb on - strand, within MPMX19_00342

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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348,989 + MPMX19_00341 0.22 +1.3
348,989 + MPMX19_00341 0.22 +0.1
348,989 + MPMX19_00341 0.22 -0.3
348,989 + MPMX19_00341 0.22 +0.4
348,989 + MPMX19_00341 0.22 +0.4
348,989 + MPMX19_00341 0.22 -1.2
348,989 + MPMX19_00341 0.22 +0.3
348,989 + MPMX19_00341 0.22 -2.7
348,989 + MPMX19_00341 0.22 +0.4
348,989 + MPMX19_00341 0.22 +0.6
348,990 - MPMX19_00341 0.22 +0.8
348,990 - MPMX19_00341 0.22 -0.4
348,990 - MPMX19_00341 0.22 -1.6
348,990 - MPMX19_00341 0.22 +0.9
348,990 - MPMX19_00341 0.22 -0.8
348,990 - MPMX19_00341 0.22 -0.7
348,990 - MPMX19_00341 0.22 +0.6
348,990 - MPMX19_00341 0.22 -1.3
348,990 - MPMX19_00341 0.22 -0.1
348,990 - MPMX19_00341 0.22 -0.4
348,990 - MPMX19_00341 0.22 +0.7
348,990 - MPMX19_00341 0.22 -0.8
348,990 - MPMX19_00341 0.22 -1.7
348,990 - MPMX19_00341 0.22 -1.1
348,991 - MPMX19_00341 0.22 +0.8
349,001 + MPMX19_00341 0.23 +0.8
349,001 + MPMX19_00341 0.23 -0.9
349,001 + MPMX19_00341 0.23 +2.1
349,002 - MPMX19_00341 0.23 +0.1
349,002 - MPMX19_00341 0.23 +0.2
349,298 + MPMX19_00341 0.49 +0.3
349,298 + MPMX19_00341 0.49 -0.8
349,298 + MPMX19_00341 0.49 -2.9
349,298 + MPMX19_00341 0.49 -0.9
349,298 + MPMX19_00341 0.49 -1.4
349,298 + MPMX19_00341 0.49 +0.8
349,298 + MPMX19_00341 0.49 +0.6
349,298 + MPMX19_00341 0.49 -0.6
349,298 + MPMX19_00341 0.49 -0.4
349,298 + MPMX19_00341 0.49 -1.3
349,299 - MPMX19_00341 0.50 -1.2
349,299 - MPMX19_00341 0.50 -1.6
349,299 - MPMX19_00341 0.50 -0.7
349,299 - MPMX19_00341 0.50 +0.4
349,299 - MPMX19_00341 0.50 -1.6
349,299 - MPMX19_00341 0.50 -1.7
349,299 - MPMX19_00341 0.50 -0.6
349,299 - MPMX19_00341 0.50 -0.0
349,299 - MPMX19_00341 0.50 -0.9
349,299 - MPMX19_00341 0.50 -0.0
349,299 - MPMX19_00341 0.50 -0.7
349,299 - MPMX19_00341 0.50 -0.9
349,299 - MPMX19_00341 0.50 +0.3
349,299 - MPMX19_00341 0.50 -1.1
349,299 - MPMX19_00341 0.50 +0.4
349,299 - MPMX19_00341 0.50 -0.5
349,299 - MPMX19_00341 0.50 -1.2
349,301 + MPMX19_00341 0.50 -0.6
349,301 + MPMX19_00341 0.50 -1.2
349,302 - MPMX19_00341 0.50 +0.5
349,302 - MPMX19_00341 0.50 -1.1
349,302 - MPMX19_00341 0.50 -0.0
349,302 - MPMX19_00341 0.50 +0.5
349,397 + MPMX19_00341 0.58 -0.3
349,397 + MPMX19_00341 0.58 -1.7
349,397 + MPMX19_00341 0.58 -1.4
349,397 + MPMX19_00341 0.58 +0.7
349,397 + MPMX19_00341 0.58 -1.1
349,397 + MPMX19_00341 0.58 -0.4
349,397 + MPMX19_00341 0.58 -0.0
349,398 - MPMX19_00341 0.58 +1.0
349,398 - MPMX19_00341 0.58 +0.5
349,398 - MPMX19_00341 0.58 -0.1
349,398 - MPMX19_00341 0.58 -0.8
349,398 - MPMX19_00341 0.58 -1.5
349,398 - MPMX19_00341 0.58 -0.0
349,398 - MPMX19_00341 0.58 +0.9
349,398 - MPMX19_00341 0.58 -1.7
349,398 - MPMX19_00341 0.58 +0.4
349,398 - MPMX19_00341 0.58 -1.2
349,745 + MPMX19_00341 0.89 +0.4
349,745 + MPMX19_00341 0.89 -1.6
349,745 + MPMX19_00341 0.89 -0.0
349,862 + +0.6
349,862 + +0.8
349,862 + -0.6
349,862 + +1.6
349,862 + +0.1
349,862 + -1.9
349,863 - +0.1
349,863 - -1.0
349,863 - -0.4
349,863 - +1.3
349,863 - -1.6
349,863 - -0.4
349,863 - -0.6
349,898 + -0.2
349,898 + -0.1
349,898 + +0.3
349,898 + +0.1
349,898 + +0.5
349,898 + -0.6
349,898 + -0.2
349,898 + +1.4
349,898 + -0.2
349,898 + +0.2
349,898 + -0.6
349,898 + -1.4
349,899 - -1.2
349,899 - -0.0
349,899 - -0.0
349,899 - -0.3
349,899 - +0.5
349,899 - -0.2
349,899 - +1.2
349,899 - -0.2
349,899 - -2.7
349,899 - +0.3
349,899 - -1.2
349,899 - +0.1
349,899 - +0.7
349,899 - +0.6
349,899 - -1.4
349,899 - -1.3
349,994 + -1.0
349,994 + -0.1
349,994 + +1.4
349,994 + +0.1
349,995 - -0.1
350,429 + MPMX19_00342 0.38 +1.0
350,429 + MPMX19_00342 0.38 -1.2
350,429 + MPMX19_00342 0.38 -0.4
350,429 + MPMX19_00342 0.38 -0.0
350,429 + MPMX19_00342 0.38 -0.2
350,429 + MPMX19_00342 0.38 -0.1
350,429 + MPMX19_00342 0.38 -0.9
350,429 + MPMX19_00342 0.38 -0.6
350,429 + MPMX19_00342 0.38 -0.2
350,429 + MPMX19_00342 0.38 +1.0
350,429 + MPMX19_00342 0.38 -0.1
350,429 + MPMX19_00342 0.38 -0.8
350,429 + MPMX19_00342 0.38 -0.8
350,429 + MPMX19_00342 0.38 +0.4
350,429 + MPMX19_00342 0.38 +0.2
350,429 + MPMX19_00342 0.38 -0.4
350,429 + MPMX19_00342 0.38 -0.9
350,429 + MPMX19_00342 0.38 -0.1
350,429 + MPMX19_00342 0.38 +0.5
350,429 + MPMX19_00342 0.38 -1.7
350,429 + MPMX19_00342 0.38 +0.3
350,429 + MPMX19_00342 0.38 -2.0
350,429 + MPMX19_00342 0.38 +1.6
350,429 + MPMX19_00342 0.38 +0.2
350,429 + MPMX19_00342 0.38 -1.0
350,429 + MPMX19_00342 0.38 -0.7
350,429 + MPMX19_00342 0.38 +0.5
350,429 + MPMX19_00342 0.38 +0.2
350,429 + MPMX19_00342 0.38 +1.2
350,429 + MPMX19_00342 0.38 -0.2
350,429 + MPMX19_00342 0.38 -0.4
350,429 + MPMX19_00342 0.38 +0.4
350,430 - MPMX19_00342 0.38 -0.1
350,430 - MPMX19_00342 0.38 -0.6
350,430 - MPMX19_00342 0.38 -0.7
350,430 - MPMX19_00342 0.38 -0.5
350,430 - MPMX19_00342 0.38 +0.4
350,430 - MPMX19_00342 0.38 -0.7
350,430 - MPMX19_00342 0.38 -0.6
350,430 - MPMX19_00342 0.38 -1.9
350,430 - MPMX19_00342 0.38 -1.2
350,430 - MPMX19_00342 0.38 -2.0
350,430 - MPMX19_00342 0.38 -1.3
350,430 - MPMX19_00342 0.38 +1.0
350,430 - MPMX19_00342 0.38 +0.9
350,430 - MPMX19_00342 0.38 -0.3
350,430 - MPMX19_00342 0.38 -0.2
350,430 - MPMX19_00342 0.38 -0.4
350,430 - MPMX19_00342 0.38 -2.3
350,430 - MPMX19_00342 0.38 +1.4
350,430 - MPMX19_00342 0.38 +0.1
350,430 - MPMX19_00342 0.38 -3.1
350,430 - MPMX19_00342 0.38 -1.6
350,430 - MPMX19_00342 0.38 -0.9
350,430 - MPMX19_00342 0.38 -1.2
350,430 - MPMX19_00342 0.38 -1.0
350,430 - MPMX19_00342 0.38 -0.6
350,430 - MPMX19_00342 0.38 +0.2
350,430 - MPMX19_00342 0.38 +0.1
350,430 - MPMX19_00342 0.38 -0.4
350,430 - MPMX19_00342 0.38 -0.4
350,430 - MPMX19_00342 0.38 +0.4
350,430 - MPMX19_00342 0.38 +1.6
350,430 - MPMX19_00342 0.38 -1.0
350,430 - MPMX19_00342 0.38 -1.6
350,430 - MPMX19_00342 0.38 +1.1
350,430 - MPMX19_00342 0.38 -0.7
350,435 + MPMX19_00342 0.38 +0.1
350,435 + MPMX19_00342 0.38 -0.2
350,435 + MPMX19_00342 0.38 -1.7
350,435 + MPMX19_00342 0.38 -1.2
350,435 + MPMX19_00342 0.38 -0.9
350,435 + MPMX19_00342 0.38 -0.5
350,435 + MPMX19_00342 0.38 -0.5
350,436 - MPMX19_00342 0.38 +0.6
350,436 - MPMX19_00342 0.38 +1.3
350,436 - MPMX19_00342 0.38 +0.4
350,436 - MPMX19_00342 0.38 -0.6
350,436 - MPMX19_00342 0.38 -2.1
350,436 - MPMX19_00342 0.38 +1.1
350,436 - MPMX19_00342 0.38 -1.3
350,504 + MPMX19_00342 0.43 -0.0
350,504 + MPMX19_00342 0.43 -0.8
350,535 - MPMX19_00342 0.45 +0.6
350,573 + MPMX19_00342 0.48 +1.6
350,574 - MPMX19_00342 0.48 -1.5
350,591 + MPMX19_00342 0.49 -0.2
350,591 + MPMX19_00342 0.49 -0.3
350,591 + MPMX19_00342 0.49 +0.2
350,591 + MPMX19_00342 0.49 -1.0
350,591 + MPMX19_00342 0.49 -0.7
350,592 - MPMX19_00342 0.49 +0.7
350,592 - MPMX19_00342 0.49 -0.7
350,592 - MPMX19_00342 0.49 -1.1
350,592 - MPMX19_00342 0.49 +0.3
350,592 - MPMX19_00342 0.49 +0.7
350,714 + MPMX19_00342 0.58 +0.4
350,715 - MPMX19_00342 0.58 -0.4
350,715 - MPMX19_00342 0.58 -1.0
350,715 - MPMX19_00342 0.58 -0.8
350,715 - MPMX19_00342 0.58 +1.0
350,715 - MPMX19_00342 0.58 -0.0
350,858 + MPMX19_00342 0.68 -0.0
350,859 - MPMX19_00342 0.68 +0.7

Or see this region's nucleotide sequence