Experiment: Methanol and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2015 and GFF2016 are separated by 271 nucleotides GFF2016 and GFF2017 are separated by 51 nucleotides GFF2017 and GFF2018 are separated by 244 nucleotides
GFF2015 - hypothetical protein, at 53,449 to 54,678
GFF2015
GFF2016 - Thiamine thiazole synthase, at 54,950 to 56,464
GFF2016
GFF2017 - hypothetical protein, at 56,516 to 56,794
GFF2017
GFF2018 - Biosynthetic peptidoglycan transglycosylase, at 57,039 to 57,725
GFF2018
Position (kb) 54
55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.982 kb on - strand, within GFF2015 at 54.026 kb on + strand, within GFF2015 at 54.026 kb on + strand, within GFF2015 at 54.026 kb on + strand, within GFF2015 at 54.026 kb on + strand, within GFF2015 at 54.026 kb on + strand, within GFF2015 at 54.089 kb on - strand, within GFF2015 at 54.098 kb on + strand, within GFF2015 at 54.098 kb on + strand, within GFF2015 at 54.098 kb on + strand, within GFF2015 at 54.098 kb on + strand, within GFF2015 at 54.099 kb on - strand, within GFF2015 at 54.099 kb on - strand, within GFF2015 at 54.099 kb on - strand, within GFF2015 at 54.099 kb on - strand, within GFF2015 at 54.099 kb on - strand, within GFF2015 at 54.104 kb on + strand, within GFF2015 at 54.104 kb on + strand, within GFF2015 at 54.104 kb on + strand, within GFF2015 at 54.104 kb on + strand, within GFF2015 at 54.104 kb on + strand, within GFF2015 at 54.104 kb on + strand, within GFF2015 at 54.104 kb on + strand, within GFF2015 at 54.105 kb on - strand, within GFF2015 at 54.105 kb on - strand, within GFF2015 at 54.105 kb on - strand, within GFF2015 at 54.105 kb on - strand, within GFF2015 at 54.105 kb on - strand, within GFF2015 at 54.105 kb on - strand, within GFF2015 at 54.105 kb on - strand, within GFF2015 at 54.190 kb on - strand, within GFF2015 at 54.211 kb on + strand, within GFF2015 at 54.211 kb on + strand, within GFF2015 at 54.242 kb on - strand, within GFF2015 at 54.242 kb on - strand, within GFF2015 at 54.242 kb on - strand, within GFF2015 at 54.243 kb on + strand, within GFF2015 at 54.243 kb on + strand, within GFF2015 at 54.243 kb on + strand, within GFF2015 at 54.244 kb on - strand, within GFF2015 at 54.244 kb on - strand, within GFF2015 at 54.244 kb on - strand, within GFF2015 at 54.244 kb on - strand, within GFF2015 at 54.244 kb on - strand, within GFF2015 at 54.247 kb on + strand, within GFF2015 at 54.248 kb on - strand, within GFF2015 at 54.248 kb on - strand, within GFF2015 at 54.254 kb on + strand, within GFF2015 at 54.258 kb on - strand, within GFF2015 at 54.258 kb on - strand, within GFF2015 at 54.375 kb on + strand, within GFF2015 at 54.376 kb on - strand, within GFF2015 at 54.376 kb on - strand, within GFF2015 at 54.428 kb on + strand, within GFF2015 at 54.447 kb on + strand, within GFF2015 at 54.474 kb on + strand, within GFF2015 at 54.494 kb on + strand, within GFF2015 at 54.516 kb on + strand, within GFF2015 at 54.516 kb on + strand, within GFF2015 at 54.516 kb on + strand, within GFF2015 at 54.516 kb on + strand, within GFF2015 at 54.516 kb on + strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.517 kb on - strand, within GFF2015 at 54.518 kb on + strand, within GFF2015 at 54.518 kb on + strand, within GFF2015 at 54.518 kb on + strand, within GFF2015 at 54.518 kb on + strand, within GFF2015 at 54.518 kb on + strand, within GFF2015 at 54.518 kb on + strand, within GFF2015 at 54.518 kb on + strand, within GFF2015 at 54.519 kb on - strand, within GFF2015 at 54.519 kb on - strand, within GFF2015 at 54.519 kb on - strand, within GFF2015 at 54.519 kb on - strand, within GFF2015 at 54.519 kb on - strand, within GFF2015 at 54.534 kb on - strand, within GFF2015 at 54.534 kb on - strand, within GFF2015 at 54.555 kb on + strand, within GFF2015 at 54.556 kb on - strand at 54.629 kb on + strand at 54.630 kb on - strand at 54.637 kb on - strand at 54.741 kb on + strand at 54.844 kb on + strand at 54.904 kb on + strand at 54.921 kb on + strand at 54.921 kb on + strand at 54.921 kb on + strand at 54.956 kb on - strand at 54.956 kb on - strand at 55.088 kb on - strand at 55.118 kb on + strand, within GFF2016 at 55.118 kb on + strand, within GFF2016 at 55.119 kb on - strand, within GFF2016 at 55.119 kb on - strand, within GFF2016 at 55.119 kb on - strand, within GFF2016 at 55.187 kb on + strand, within GFF2016 at 55.187 kb on + strand, within GFF2016 at 55.199 kb on + strand, within GFF2016 at 55.199 kb on + strand, within GFF2016 at 55.200 kb on - strand, within GFF2016 at 55.201 kb on + strand, within GFF2016 at 55.201 kb on + strand, within GFF2016 at 55.202 kb on - strand, within GFF2016 at 55.240 kb on + strand, within GFF2016 at 55.335 kb on + strand, within GFF2016 at 55.336 kb on - strand, within GFF2016 at 55.379 kb on + strand, within GFF2016 at 55.418 kb on - strand, within GFF2016 at 55.418 kb on - strand, within GFF2016 at 55.418 kb on - strand, within GFF2016 at 55.418 kb on - strand, within GFF2016 at 55.418 kb on - strand, within GFF2016 at 55.601 kb on + strand, within GFF2016 at 55.607 kb on + strand, within GFF2016 at 55.608 kb on - strand, within GFF2016 at 55.643 kb on - strand, within GFF2016 at 55.646 kb on + strand, within GFF2016 at 55.646 kb on + strand, within GFF2016 at 55.646 kb on + strand, within GFF2016 at 55.646 kb on + strand, within GFF2016 at 55.646 kb on + strand, within GFF2016 at 55.647 kb on - strand, within GFF2016 at 55.702 kb on + strand, within GFF2016 at 55.703 kb on - strand, within GFF2016 at 55.892 kb on - strand, within GFF2016 at 55.892 kb on - strand, within GFF2016 at 55.924 kb on - strand, within GFF2016 at 55.924 kb on - strand, within GFF2016 at 56.048 kb on + strand, within GFF2016 at 56.048 kb on + strand, within GFF2016 at 56.090 kb on - strand, within GFF2016 at 56.096 kb on + strand, within GFF2016 at 56.096 kb on + strand, within GFF2016 at 56.098 kb on + strand, within GFF2016 at 56.098 kb on + strand, within GFF2016 at 56.098 kb on + strand, within GFF2016 at 56.098 kb on + strand, within GFF2016 at 56.098 kb on + strand, within GFF2016 at 56.099 kb on - strand, within GFF2016 at 56.099 kb on - strand, within GFF2016 at 56.099 kb on - strand, within GFF2016 at 56.099 kb on - strand, within GFF2016 at 56.099 kb on - strand, within GFF2016 at 56.133 kb on + strand, within GFF2016 at 56.133 kb on + strand, within GFF2016 at 56.239 kb on + strand, within GFF2016 at 56.269 kb on + strand, within GFF2016 at 56.269 kb on + strand, within GFF2016 at 56.270 kb on - strand, within GFF2016 at 56.270 kb on - strand, within GFF2016 at 56.293 kb on + strand, within GFF2016 at 56.293 kb on + strand, within GFF2016 at 56.293 kb on + strand, within GFF2016 at 56.293 kb on + strand, within GFF2016 at 56.294 kb on - strand, within GFF2016 at 56.294 kb on - strand, within GFF2016 at 56.294 kb on - strand, within GFF2016 at 56.362 kb on - strand at 56.387 kb on + strand at 56.388 kb on - strand at 56.515 kb on + strand at 56.516 kb on - strand at 56.516 kb on - strand at 56.516 kb on - strand at 56.516 kb on - strand at 56.527 kb on + strand at 56.527 kb on + strand at 56.527 kb on + strand at 56.527 kb on + strand at 56.527 kb on + strand at 56.527 kb on + strand at 56.528 kb on - strand at 56.528 kb on - strand at 56.528 kb on - strand at 56.528 kb on - strand at 56.528 kb on - strand at 56.528 kb on - strand at 56.530 kb on + strand at 56.531 kb on - strand at 56.627 kb on + strand, within GFF2017 at 56.628 kb on - strand, within GFF2017 at 56.646 kb on + strand, within GFF2017 at 56.646 kb on + strand, within GFF2017 at 56.646 kb on + strand, within GFF2017 at 56.647 kb on - strand, within GFF2017 at 56.647 kb on - strand, within GFF2017 at 56.734 kb on - strand, within GFF2017 at 56.748 kb on - strand, within GFF2017 at 56.748 kb on - strand, within GFF2017 at 56.884 kb on + strand at 56.884 kb on + strand at 56.884 kb on + strand at 56.885 kb on - strand at 56.907 kb on + strand at 56.945 kb on + strand at 56.946 kb on - strand at 56.946 kb on - strand at 56.967 kb on + strand at 56.967 kb on + strand at 56.968 kb on - strand at 56.968 kb on - strand at 56.968 kb on - strand at 56.968 kb on - strand at 56.968 kb on - strand at 56.968 kb on - strand at 56.968 kb on - strand at 56.983 kb on - strand at 56.983 kb on - strand at 56.994 kb on + strand at 56.994 kb on + strand at 56.994 kb on + strand at 56.994 kb on + strand at 56.995 kb on - strand at 56.995 kb on - strand at 56.995 kb on - strand at 56.995 kb on - strand at 57.022 kb on - strand at 57.093 kb on + strand at 57.094 kb on - strand at 57.094 kb on - strand at 57.094 kb on - strand at 57.097 kb on + strand at 57.122 kb on - strand, within GFF2018 at 57.200 kb on - strand, within GFF2018 at 57.303 kb on - strand, within GFF2018 at 57.309 kb on - strand, within GFF2018
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol and casaminos (C) remove 53,982 - GFF2015 0.43 -0.7 54,026 + GFF2015 0.47 +0.2 54,026 + GFF2015 0.47 -0.1 54,026 + GFF2015 0.47 +0.0 54,026 + GFF2015 0.47 -0.3 54,026 + GFF2015 0.47 -0.3 54,089 - GFF2015 0.52 +0.2 54,098 + GFF2015 0.53 +0.3 54,098 + GFF2015 0.53 -1.5 54,098 + GFF2015 0.53 -2.5 54,098 + GFF2015 0.53 -1.4 54,099 - GFF2015 0.53 +1.1 54,099 - GFF2015 0.53 -0.6 54,099 - GFF2015 0.53 -0.1 54,099 - GFF2015 0.53 +0.9 54,099 - GFF2015 0.53 -0.2 54,104 + GFF2015 0.53 -0.5 54,104 + GFF2015 0.53 -1.5 54,104 + GFF2015 0.53 -0.5 54,104 + GFF2015 0.53 -0.4 54,104 + GFF2015 0.53 -0.9 54,104 + GFF2015 0.53 -0.6 54,104 + GFF2015 0.53 +0.6 54,105 - GFF2015 0.53 +0.2 54,105 - GFF2015 0.53 -1.0 54,105 - GFF2015 0.53 -0.3 54,105 - GFF2015 0.53 -1.0 54,105 - GFF2015 0.53 -0.7 54,105 - GFF2015 0.53 -1.5 54,105 - GFF2015 0.53 +1.0 54,190 - GFF2015 0.60 -0.3 54,211 + GFF2015 0.62 -0.3 54,211 + GFF2015 0.62 -0.4 54,242 - GFF2015 0.64 -0.1 54,242 - GFF2015 0.64 -0.1 54,242 - GFF2015 0.64 -0.3 54,243 + GFF2015 0.65 +0.9 54,243 + GFF2015 0.65 -1.1 54,243 + GFF2015 0.65 +0.3 54,244 - GFF2015 0.65 -1.4 54,244 - GFF2015 0.65 -0.7 54,244 - GFF2015 0.65 -1.9 54,244 - GFF2015 0.65 +1.4 54,244 - GFF2015 0.65 -1.5 54,247 + GFF2015 0.65 -0.5 54,248 - GFF2015 0.65 +0.0 54,248 - GFF2015 0.65 -0.1 54,254 + GFF2015 0.65 +0.1 54,258 - GFF2015 0.66 +0.1 54,258 - GFF2015 0.66 +0.1 54,375 + GFF2015 0.75 -1.5 54,376 - GFF2015 0.75 -1.7 54,376 - GFF2015 0.75 -0.4 54,428 + GFF2015 0.80 -0.5 54,447 + GFF2015 0.81 -0.7 54,474 + GFF2015 0.83 +0.4 54,494 + GFF2015 0.85 -0.6 54,516 + GFF2015 0.87 -0.7 54,516 + GFF2015 0.87 -0.1 54,516 + GFF2015 0.87 -1.7 54,516 + GFF2015 0.87 +0.1 54,516 + GFF2015 0.87 +0.1 54,517 - GFF2015 0.87 +0.7 54,517 - GFF2015 0.87 +0.1 54,517 - GFF2015 0.87 -0.6 54,517 - GFF2015 0.87 +0.3 54,517 - GFF2015 0.87 -1.3 54,517 - GFF2015 0.87 +1.1 54,517 - GFF2015 0.87 -1.1 54,517 - GFF2015 0.87 +0.3 54,518 + GFF2015 0.87 -2.7 54,518 + GFF2015 0.87 -0.9 54,518 + GFF2015 0.87 -0.8 54,518 + GFF2015 0.87 +0.2 54,518 + GFF2015 0.87 -0.1 54,518 + GFF2015 0.87 -0.8 54,518 + GFF2015 0.87 -0.7 54,519 - GFF2015 0.87 -1.2 54,519 - GFF2015 0.87 -1.1 54,519 - GFF2015 0.87 +0.4 54,519 - GFF2015 0.87 -0.7 54,519 - GFF2015 0.87 -0.1 54,534 - GFF2015 0.88 +0.9 54,534 - GFF2015 0.88 -0.1 54,555 + GFF2015 0.90 -1.1 54,556 - -0.5 54,629 + +0.4 54,630 - -0.9 54,637 - -0.1 54,741 + -0.5 54,844 + -1.0 54,904 + -0.8 54,921 + -1.1 54,921 + +0.1 54,921 + +1.2 54,956 - -1.1 54,956 - -1.1 55,088 - -1.7 55,118 + GFF2016 0.11 -0.7 55,118 + GFF2016 0.11 -0.9 55,119 - GFF2016 0.11 +1.3 55,119 - GFF2016 0.11 -0.3 55,119 - GFF2016 0.11 -0.6 55,187 + GFF2016 0.16 -0.3 55,187 + GFF2016 0.16 -1.9 55,199 + GFF2016 0.16 +0.5 55,199 + GFF2016 0.16 -0.3 55,200 - GFF2016 0.17 +0.9 55,201 + GFF2016 0.17 -0.3 55,201 + GFF2016 0.17 -0.1 55,202 - GFF2016 0.17 +0.5 55,240 + GFF2016 0.19 +0.1 55,335 + GFF2016 0.25 -2.3 55,336 - GFF2016 0.25 -1.4 55,379 + GFF2016 0.28 -0.8 55,418 - GFF2016 0.31 -0.7 55,418 - GFF2016 0.31 +0.3 55,418 - GFF2016 0.31 +0.9 55,418 - GFF2016 0.31 -1.1 55,418 - GFF2016 0.31 -1.3 55,601 + GFF2016 0.43 -0.9 55,607 + GFF2016 0.43 -0.7 55,608 - GFF2016 0.43 +0.9 55,643 - GFF2016 0.46 -0.1 55,646 + GFF2016 0.46 +0.3 55,646 + GFF2016 0.46 +0.1 55,646 + GFF2016 0.46 +0.4 55,646 + GFF2016 0.46 -0.3 55,646 + GFF2016 0.46 +0.6 55,647 - GFF2016 0.46 +0.4 55,702 + GFF2016 0.50 -0.1 55,703 - GFF2016 0.50 +0.3 55,892 - GFF2016 0.62 +0.1 55,892 - GFF2016 0.62 -0.8 55,924 - GFF2016 0.64 -1.1 55,924 - GFF2016 0.64 -0.1 56,048 + GFF2016 0.72 -0.8 56,048 + GFF2016 0.72 +0.8 56,090 - GFF2016 0.75 -1.7 56,096 + GFF2016 0.76 +0.4 56,096 + GFF2016 0.76 -0.3 56,098 + GFF2016 0.76 +0.9 56,098 + GFF2016 0.76 -1.5 56,098 + GFF2016 0.76 +0.5 56,098 + GFF2016 0.76 -1.2 56,098 + GFF2016 0.76 +1.4 56,099 - GFF2016 0.76 +0.4 56,099 - GFF2016 0.76 -0.5 56,099 - GFF2016 0.76 +0.6 56,099 - GFF2016 0.76 +0.1 56,099 - GFF2016 0.76 +0.4 56,133 + GFF2016 0.78 -0.4 56,133 + GFF2016 0.78 -0.7 56,239 + GFF2016 0.85 +0.4 56,269 + GFF2016 0.87 +1.1 56,269 + GFF2016 0.87 -0.2 56,270 - GFF2016 0.87 -0.7 56,270 - GFF2016 0.87 -0.8 56,293 + GFF2016 0.89 -0.2 56,293 + GFF2016 0.89 +0.9 56,293 + GFF2016 0.89 +0.2 56,293 + GFF2016 0.89 +0.9 56,294 - GFF2016 0.89 -0.3 56,294 - GFF2016 0.89 -0.6 56,294 - GFF2016 0.89 +1.4 56,362 - -1.1 56,387 + -0.4 56,388 - -0.4 56,515 + -2.1 56,516 - -0.8 56,516 - +0.1 56,516 - +0.7 56,516 - -1.1 56,527 + -0.2 56,527 + -1.3 56,527 + +0.1 56,527 + -1.2 56,527 + -0.1 56,527 + +0.0 56,528 - +0.1 56,528 - -1.5 56,528 - -1.1 56,528 - -0.4 56,528 - +1.9 56,528 - -0.1 56,530 + -1.8 56,531 - -0.4 56,627 + GFF2017 0.40 +0.3 56,628 - GFF2017 0.40 -0.1 56,646 + GFF2017 0.47 +1.1 56,646 + GFF2017 0.47 -0.1 56,646 + GFF2017 0.47 -0.1 56,647 - GFF2017 0.47 +0.5 56,647 - GFF2017 0.47 -2.3 56,734 - GFF2017 0.78 +1.1 56,748 - GFF2017 0.83 +0.9 56,748 - GFF2017 0.83 +0.3 56,884 + +0.4 56,884 + -0.0 56,884 + -1.1 56,885 - -0.9 56,907 + -0.7 56,945 + -1.2 56,946 - -0.3 56,946 - +0.9 56,967 + +0.9 56,967 + -1.7 56,968 - -0.1 56,968 - +0.7 56,968 - -0.6 56,968 - -0.5 56,968 - -0.4 56,968 - -0.6 56,968 - -0.2 56,983 - -0.1 56,983 - -0.7 56,994 + -1.5 56,994 + -0.7 56,994 + -1.1 56,994 + -0.7 56,995 - -0.7 56,995 - -0.1 56,995 - -0.9 56,995 - -1.7 57,022 - -0.5 57,093 + -0.7 57,094 - -0.6 57,094 - +0.1 57,094 - -1.4 57,097 + +0.5 57,122 - GFF2018 0.12 -0.1 57,200 - GFF2018 0.23 -1.3 57,303 - GFF2018 0.38 -0.7 57,309 - GFF2018 0.39 -0.8
Or see this region's nucleotide sequence