Strain Fitness in Methylophilus sp. DMC18 around GFF1317

Experiment: Methanol and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1316 and GFF1317 are separated by 210 nucleotidesGFF1317 and GFF1318 are separated by 39 nucleotidesGFF1318 and GFF1319 overlap by 11 nucleotides GFF1316 - hypothetical protein, at 577,938 to 579,506 GFF1316 GFF1317 - Hydroxyacylglutathione hydrolase, at 579,717 to 580,496 GFF1317 GFF1318 - hypothetical protein, at 580,536 to 581,366 GFF1318 GFF1319 - Ribonuclease H, at 581,356 to 581,781 GFF1319 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1at 578.842 kb on + strand, within GFF1316at 578.949 kb on - strand, within GFF1316at 579.089 kb on + strand, within GFF1316at 579.090 kb on - strand, within GFF1316at 579.090 kb on - strand, within GFF1316at 579.101 kb on + strand, within GFF1316at 579.108 kb on - strand, within GFF1316at 579.185 kb on - strand, within GFF1316at 579.185 kb on - strand, within GFF1316at 579.185 kb on - strand, within GFF1316at 579.224 kb on - strand, within GFF1316at 579.224 kb on - strand, within GFF1316at 579.266 kb on - strand, within GFF1316at 579.266 kb on - strand, within GFF1316at 579.338 kb on + strand, within GFF1316at 579.373 kb on - strandat 579.373 kb on - strandat 579.400 kb on + strandat 579.439 kb on + strandat 579.440 kb on - strandat 579.440 kb on - strandat 579.440 kb on - strandat 579.513 kb on - strandat 579.513 kb on - strandat 579.515 kb on + strandat 579.515 kb on + strandat 579.516 kb on - strandat 579.516 kb on - strandat 579.520 kb on + strandat 579.568 kb on + strandat 579.569 kb on - strandat 579.611 kb on - strandat 579.617 kb on - strandat 579.617 kb on - strandat 579.652 kb on - strandat 579.652 kb on - strandat 579.652 kb on - strandat 579.652 kb on - strandat 579.877 kb on - strand, within GFF1317at 579.877 kb on - strand, within GFF1317at 579.906 kb on + strand, within GFF1317at 579.927 kb on + strand, within GFF1317at 579.959 kb on + strand, within GFF1317at 579.959 kb on + strand, within GFF1317at 579.960 kb on - strand, within GFF1317at 579.961 kb on + strand, within GFF1317at 579.961 kb on + strand, within GFF1317at 579.961 kb on + strand, within GFF1317at 579.962 kb on - strand, within GFF1317at 579.962 kb on - strand, within GFF1317at 580.014 kb on + strand, within GFF1317at 580.015 kb on - strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.024 kb on + strand, within GFF1317at 580.025 kb on - strand, within GFF1317at 580.025 kb on - strand, within GFF1317at 580.025 kb on - strand, within GFF1317at 580.111 kb on + strand, within GFF1317at 580.111 kb on + strand, within GFF1317at 580.111 kb on + strand, within GFF1317at 580.112 kb on - strand, within GFF1317at 580.112 kb on - strand, within GFF1317at 580.112 kb on - strand, within GFF1317at 580.112 kb on - strand, within GFF1317at 580.114 kb on + strand, within GFF1317at 580.114 kb on + strand, within GFF1317at 580.115 kb on - strand, within GFF1317at 580.115 kb on - strand, within GFF1317at 580.115 kb on - strand, within GFF1317at 580.133 kb on + strand, within GFF1317at 580.134 kb on - strand, within GFF1317at 580.134 kb on - strand, within GFF1317at 580.164 kb on + strand, within GFF1317at 580.164 kb on + strand, within GFF1317at 580.165 kb on - strand, within GFF1317at 580.165 kb on - strand, within GFF1317at 580.167 kb on + strand, within GFF1317at 580.167 kb on + strand, within GFF1317at 580.168 kb on - strand, within GFF1317at 580.168 kb on - strand, within GFF1317at 580.168 kb on - strand, within GFF1317at 580.168 kb on - strand, within GFF1317at 580.168 kb on - strand, within GFF1317at 580.168 kb on - strand, within GFF1317at 580.190 kb on + strand, within GFF1317at 580.190 kb on + strand, within GFF1317at 580.232 kb on - strand, within GFF1317at 580.258 kb on + strand, within GFF1317at 580.259 kb on - strand, within GFF1317at 580.259 kb on - strand, within GFF1317at 580.330 kb on - strand, within GFF1317at 580.341 kb on + strand, within GFF1317at 580.342 kb on - strand, within GFF1317at 580.342 kb on - strand, within GFF1317at 580.429 kb on - strandat 580.438 kb on + strandat 580.438 kb on + strandat 580.438 kb on + strandat 580.438 kb on + strandat 580.438 kb on + strandat 580.438 kb on + strandat 580.438 kb on + strandat 580.439 kb on - strandat 580.439 kb on - strandat 580.439 kb on - strandat 580.439 kb on - strandat 580.474 kb on - strandat 580.474 kb on - strandat 580.475 kb on + strandat 580.476 kb on - strandat 580.583 kb on + strandat 580.583 kb on + strandat 580.584 kb on - strandat 580.584 kb on - strandat 580.584 kb on - strandat 580.584 kb on - strandat 580.635 kb on + strand, within GFF1318at 580.635 kb on + strand, within GFF1318at 580.635 kb on + strand, within GFF1318at 580.635 kb on + strand, within GFF1318at 580.635 kb on + strand, within GFF1318at 580.636 kb on - strand, within GFF1318at 580.636 kb on - strand, within GFF1318at 580.636 kb on - strand, within GFF1318at 580.636 kb on - strand, within GFF1318at 580.636 kb on - strand, within GFF1318at 580.637 kb on + strand, within GFF1318at 580.637 kb on + strand, within GFF1318at 580.637 kb on + strand, within GFF1318at 580.638 kb on - strand, within GFF1318at 580.638 kb on - strand, within GFF1318at 580.638 kb on - strand, within GFF1318at 580.638 kb on - strand, within GFF1318at 580.638 kb on - strand, within GFF1318at 580.638 kb on - strand, within GFF1318at 580.638 kb on - strand, within GFF1318at 580.795 kb on + strand, within GFF1318at 580.795 kb on + strand, within GFF1318at 580.795 kb on + strand, within GFF1318at 580.796 kb on - strand, within GFF1318at 580.796 kb on - strand, within GFF1318at 580.928 kb on + strand, within GFF1318at 580.929 kb on - strand, within GFF1318at 580.929 kb on - strand, within GFF1318at 581.056 kb on + strand, within GFF1318at 581.056 kb on + strand, within GFF1318at 581.056 kb on + strand, within GFF1318at 581.078 kb on + strand, within GFF1318at 581.078 kb on + strand, within GFF1318at 581.086 kb on - strand, within GFF1318at 581.187 kb on + strand, within GFF1318at 581.187 kb on + strand, within GFF1318at 581.188 kb on - strand, within GFF1318at 581.227 kb on + strand, within GFF1318at 581.227 kb on + strand, within GFF1318at 581.228 kb on - strand, within GFF1318at 581.228 kb on - strand, within GFF1318at 581.230 kb on + strand, within GFF1318at 581.230 kb on + strand, within GFF1318at 581.296 kb on + strandat 581.297 kb on - strandat 581.297 kb on - strandat 581.321 kb on - strandat 581.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol and casaminos (C)
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578,842 + GFF1316 0.58 +0.7
578,949 - GFF1316 0.64 +1.2
579,089 + GFF1316 0.73 +0.7
579,090 - GFF1316 0.73 -0.2
579,090 - GFF1316 0.73 -0.2
579,101 + GFF1316 0.74 +1.1
579,108 - GFF1316 0.75 -1.5
579,185 - GFF1316 0.79 -0.2
579,185 - GFF1316 0.79 +0.4
579,185 - GFF1316 0.79 +0.1
579,224 - GFF1316 0.82 -1.9
579,224 - GFF1316 0.82 -0.2
579,266 - GFF1316 0.85 -0.9
579,266 - GFF1316 0.85 -0.5
579,338 + GFF1316 0.89 -0.7
579,373 - +1.4
579,373 - -0.6
579,400 + +0.5
579,439 + -1.1
579,440 - -0.2
579,440 - +0.0
579,440 - -1.7
579,513 - -0.6
579,513 - -0.1
579,515 + +0.5
579,515 + +0.2
579,516 - -0.8
579,516 - -0.1
579,520 + -0.8
579,568 + -0.3
579,569 - +0.1
579,611 - +0.4
579,617 - -0.9
579,617 - +0.5
579,652 - -0.5
579,652 - +0.5
579,652 - -0.4
579,652 - -2.1
579,877 - GFF1317 0.21 -1.5
579,877 - GFF1317 0.21 +0.8
579,906 + GFF1317 0.24 -1.1
579,927 + GFF1317 0.27 -0.1
579,959 + GFF1317 0.31 -0.9
579,959 + GFF1317 0.31 +0.1
579,960 - GFF1317 0.31 +0.1
579,961 + GFF1317 0.31 -1.2
579,961 + GFF1317 0.31 +0.3
579,961 + GFF1317 0.31 -0.9
579,962 - GFF1317 0.31 +0.4
579,962 - GFF1317 0.31 +1.3
580,014 + GFF1317 0.38 +1.1
580,015 - GFF1317 0.38 -0.2
580,024 + GFF1317 0.39 -0.2
580,024 + GFF1317 0.39 +0.8
580,024 + GFF1317 0.39 -1.2
580,024 + GFF1317 0.39 -2.2
580,024 + GFF1317 0.39 -1.4
580,024 + GFF1317 0.39 -0.8
580,024 + GFF1317 0.39 -2.2
580,024 + GFF1317 0.39 -0.2
580,025 - GFF1317 0.39 +0.0
580,025 - GFF1317 0.39 -0.9
580,025 - GFF1317 0.39 +0.1
580,111 + GFF1317 0.51 -0.3
580,111 + GFF1317 0.51 -0.7
580,111 + GFF1317 0.51 +0.3
580,112 - GFF1317 0.51 +1.1
580,112 - GFF1317 0.51 +0.7
580,112 - GFF1317 0.51 -0.1
580,112 - GFF1317 0.51 -1.2
580,114 + GFF1317 0.51 -1.5
580,114 + GFF1317 0.51 +0.8
580,115 - GFF1317 0.51 -0.9
580,115 - GFF1317 0.51 +0.1
580,115 - GFF1317 0.51 +0.8
580,133 + GFF1317 0.53 -1.9
580,134 - GFF1317 0.53 +1.1
580,134 - GFF1317 0.53 +0.1
580,164 + GFF1317 0.57 -2.3
580,164 + GFF1317 0.57 -0.3
580,165 - GFF1317 0.57 +0.6
580,165 - GFF1317 0.57 +0.4
580,167 + GFF1317 0.58 +1.1
580,167 + GFF1317 0.58 -0.9
580,168 - GFF1317 0.58 -1.2
580,168 - GFF1317 0.58 +0.1
580,168 - GFF1317 0.58 -0.2
580,168 - GFF1317 0.58 +1.0
580,168 - GFF1317 0.58 -1.7
580,168 - GFF1317 0.58 -0.9
580,190 + GFF1317 0.61 -0.9
580,190 + GFF1317 0.61 -0.2
580,232 - GFF1317 0.66 +0.2
580,258 + GFF1317 0.69 -0.5
580,259 - GFF1317 0.69 +0.4
580,259 - GFF1317 0.69 -0.5
580,330 - GFF1317 0.79 -0.3
580,341 + GFF1317 0.80 -0.0
580,342 - GFF1317 0.80 -0.2
580,342 - GFF1317 0.80 -0.9
580,429 - -0.9
580,438 + -0.3
580,438 + -0.6
580,438 + -0.9
580,438 + -0.3
580,438 + -2.7
580,438 + -1.2
580,438 + -1.0
580,439 - -0.0
580,439 - +0.1
580,439 - -0.5
580,439 - -0.0
580,474 - +0.1
580,474 - -0.1
580,475 + +0.1
580,476 - -1.0
580,583 + +0.1
580,583 + +0.1
580,584 - +0.3
580,584 - -0.1
580,584 - -0.7
580,584 - -2.2
580,635 + GFF1318 0.12 -0.5
580,635 + GFF1318 0.12 -1.3
580,635 + GFF1318 0.12 +0.2
580,635 + GFF1318 0.12 -0.3
580,635 + GFF1318 0.12 +0.3
580,636 - GFF1318 0.12 +0.4
580,636 - GFF1318 0.12 -0.5
580,636 - GFF1318 0.12 -0.9
580,636 - GFF1318 0.12 +0.2
580,636 - GFF1318 0.12 +0.4
580,637 + GFF1318 0.12 +0.1
580,637 + GFF1318 0.12 -0.3
580,637 + GFF1318 0.12 -1.8
580,638 - GFF1318 0.12 -0.8
580,638 - GFF1318 0.12 -0.6
580,638 - GFF1318 0.12 -0.0
580,638 - GFF1318 0.12 -2.2
580,638 - GFF1318 0.12 -0.5
580,638 - GFF1318 0.12 -0.5
580,638 - GFF1318 0.12 -0.6
580,795 + GFF1318 0.31 +0.4
580,795 + GFF1318 0.31 -0.2
580,795 + GFF1318 0.31 -0.5
580,796 - GFF1318 0.31 -1.2
580,796 - GFF1318 0.31 -0.0
580,928 + GFF1318 0.47 -0.5
580,929 - GFF1318 0.47 +0.1
580,929 - GFF1318 0.47 -1.5
581,056 + GFF1318 0.63 -0.4
581,056 + GFF1318 0.63 -0.9
581,056 + GFF1318 0.63 -0.3
581,078 + GFF1318 0.65 -1.5
581,078 + GFF1318 0.65 -1.0
581,086 - GFF1318 0.66 -0.2
581,187 + GFF1318 0.78 -0.9
581,187 + GFF1318 0.78 +1.1
581,188 - GFF1318 0.78 -0.3
581,227 + GFF1318 0.83 +0.4
581,227 + GFF1318 0.83 +0.2
581,228 - GFF1318 0.83 +0.4
581,228 - GFF1318 0.83 +0.4
581,230 + GFF1318 0.84 +1.4
581,230 + GFF1318 0.84 -1.2
581,296 + -0.5
581,297 - -2.6
581,297 - -1.0
581,321 - +0.7
581,321 - -1.0

Or see this region's nucleotide sequence