Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06234

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06232 and MPMX19_06233 are separated by 158 nucleotidesMPMX19_06233 and MPMX19_06234 are separated by 31 nucleotidesMPMX19_06234 and MPMX19_06235 are separated by 149 nucleotides MPMX19_06232: MPMX19_06232 - Pyruvate/proton symporter BtsT, at 420,879 to 422,684 _06232 MPMX19_06233: MPMX19_06233 - putative oxidoreductase YgfF, at 422,843 to 423,604 _06233 MPMX19_06234: MPMX19_06234 - hypothetical protein, at 423,636 to 424,832 _06234 MPMX19_06235: MPMX19_06235 - Glycine cleavage system transcriptional activator, at 424,982 to 425,878 _06235 Position (kb) 423 424 425Strain fitness (log2 ratio) -2 -1 0 1at 422.718 kb on + strandat 422.719 kb on - strandat 422.719 kb on - strandat 422.838 kb on + strandat 422.838 kb on + strandat 422.838 kb on + strandat 422.839 kb on - strandat 422.839 kb on - strandat 422.839 kb on - strandat 422.839 kb on - strandat 422.839 kb on - strandat 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.018 kb on + strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.019 kb on - strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.120 kb on + strand, within MPMX19_06233at 423.121 kb on - strand, within MPMX19_06233at 423.121 kb on - strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.129 kb on + strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.130 kb on - strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.510 kb on + strand, within MPMX19_06233at 423.511 kb on - strand, within MPMX19_06233at 423.511 kb on - strand, within MPMX19_06233at 423.620 kb on + strandat 423.620 kb on + strandat 423.621 kb on - strandat 423.793 kb on + strand, within MPMX19_06234at 423.794 kb on - strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.835 kb on + strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.836 kb on - strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.892 kb on + strand, within MPMX19_06234at 423.893 kb on - strand, within MPMX19_06234at 423.893 kb on - strand, within MPMX19_06234at 423.893 kb on - strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.162 kb on + strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.163 kb on - strand, within MPMX19_06234at 424.412 kb on + strand, within MPMX19_06234at 424.412 kb on + strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.413 kb on - strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.414 kb on + strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.415 kb on - strand, within MPMX19_06234at 424.447 kb on + strand, within MPMX19_06234at 424.447 kb on + strand, within MPMX19_06234at 424.666 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.696 kb on + strand, within MPMX19_06234at 424.697 kb on - strand, within MPMX19_06234at 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.738 kb on + strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.739 kb on - strandat 424.754 kb on - strandat 424.896 kb on + strandat 424.919 kb on + strandat 424.920 kb on - strandat 424.922 kb on + strandat 424.940 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.045 kb on + strandat 425.046 kb on - strandat 425.046 kb on - strandat 425.046 kb on - strandat 425.046 kb on - strandat 425.324 kb on + strand, within MPMX19_06235at 425.325 kb on - strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.643 kb on + strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.644 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235at 425.787 kb on - strand, within MPMX19_06235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
422,718 + +0.3
422,719 - +1.0
422,719 - -0.3
422,838 + +0.0
422,838 + -0.7
422,838 + +0.6
422,839 - +0.2
422,839 - -0.3
422,839 - -0.5
422,839 - -0.3
422,839 - -0.3
423,018 + MPMX19_06233 0.23 +0.0
423,018 + MPMX19_06233 0.23 -1.1
423,018 + MPMX19_06233 0.23 -2.2
423,018 + MPMX19_06233 0.23 -1.1
423,018 + MPMX19_06233 0.23 -0.6
423,018 + MPMX19_06233 0.23 +0.6
423,018 + MPMX19_06233 0.23 -1.7
423,018 + MPMX19_06233 0.23 +0.0
423,018 + MPMX19_06233 0.23 -0.7
423,019 - MPMX19_06233 0.23 -1.1
423,019 - MPMX19_06233 0.23 -0.4
423,019 - MPMX19_06233 0.23 -2.3
423,019 - MPMX19_06233 0.23 +0.0
423,019 - MPMX19_06233 0.23 -1.0
423,019 - MPMX19_06233 0.23 -1.3
423,019 - MPMX19_06233 0.23 -0.5
423,120 + MPMX19_06233 0.36 -2.4
423,120 + MPMX19_06233 0.36 -0.4
423,120 + MPMX19_06233 0.36 -0.5
423,120 + MPMX19_06233 0.36 +0.4
423,120 + MPMX19_06233 0.36 -0.3
423,121 - MPMX19_06233 0.36 -0.6
423,121 - MPMX19_06233 0.36 -0.7
423,129 + MPMX19_06233 0.38 -0.9
423,129 + MPMX19_06233 0.38 -2.1
423,129 + MPMX19_06233 0.38 -1.7
423,129 + MPMX19_06233 0.38 +0.2
423,129 + MPMX19_06233 0.38 -2.2
423,129 + MPMX19_06233 0.38 -0.4
423,129 + MPMX19_06233 0.38 +0.0
423,129 + MPMX19_06233 0.38 +0.2
423,129 + MPMX19_06233 0.38 +0.4
423,129 + MPMX19_06233 0.38 -1.9
423,129 + MPMX19_06233 0.38 -2.2
423,130 - MPMX19_06233 0.38 -0.5
423,130 - MPMX19_06233 0.38 +0.3
423,130 - MPMX19_06233 0.38 -2.6
423,130 - MPMX19_06233 0.38 -0.2
423,130 - MPMX19_06233 0.38 -1.1
423,130 - MPMX19_06233 0.38 -1.4
423,510 + MPMX19_06233 0.88 -0.3
423,510 + MPMX19_06233 0.88 -0.1
423,510 + MPMX19_06233 0.88 +0.0
423,510 + MPMX19_06233 0.88 -0.4
423,510 + MPMX19_06233 0.88 -0.6
423,511 - MPMX19_06233 0.88 -0.2
423,511 - MPMX19_06233 0.88 -0.5
423,620 + -1.0
423,620 + -0.8
423,621 - -2.2
423,793 + MPMX19_06234 0.13 +0.6
423,794 - MPMX19_06234 0.13 -0.6
423,835 + MPMX19_06234 0.17 -1.3
423,835 + MPMX19_06234 0.17 -1.7
423,835 + MPMX19_06234 0.17 -0.5
423,835 + MPMX19_06234 0.17 -0.9
423,835 + MPMX19_06234 0.17 +0.1
423,835 + MPMX19_06234 0.17 -0.5
423,835 + MPMX19_06234 0.17 -1.0
423,836 - MPMX19_06234 0.17 -2.1
423,836 - MPMX19_06234 0.17 -1.3
423,836 - MPMX19_06234 0.17 +0.6
423,836 - MPMX19_06234 0.17 +0.1
423,836 - MPMX19_06234 0.17 -0.2
423,836 - MPMX19_06234 0.17 +0.0
423,836 - MPMX19_06234 0.17 -1.3
423,892 + MPMX19_06234 0.21 +1.3
423,892 + MPMX19_06234 0.21 +0.1
423,892 + MPMX19_06234 0.21 +1.1
423,892 + MPMX19_06234 0.21 +1.6
423,893 - MPMX19_06234 0.21 -0.8
423,893 - MPMX19_06234 0.21 -2.1
423,893 - MPMX19_06234 0.21 -1.2
424,162 + MPMX19_06234 0.44 -0.9
424,162 + MPMX19_06234 0.44 -1.2
424,162 + MPMX19_06234 0.44 -0.6
424,162 + MPMX19_06234 0.44 -0.9
424,162 + MPMX19_06234 0.44 -0.6
424,162 + MPMX19_06234 0.44 -1.7
424,162 + MPMX19_06234 0.44 +0.8
424,162 + MPMX19_06234 0.44 -2.6
424,162 + MPMX19_06234 0.44 +0.8
424,162 + MPMX19_06234 0.44 -0.3
424,163 - MPMX19_06234 0.44 -0.4
424,163 - MPMX19_06234 0.44 -0.1
424,163 - MPMX19_06234 0.44 -0.8
424,163 - MPMX19_06234 0.44 -0.7
424,163 - MPMX19_06234 0.44 +1.6
424,163 - MPMX19_06234 0.44 -1.1
424,412 + MPMX19_06234 0.65 +0.8
424,412 + MPMX19_06234 0.65 -1.0
424,413 - MPMX19_06234 0.65 -0.6
424,413 - MPMX19_06234 0.65 -0.5
424,413 - MPMX19_06234 0.65 -0.9
424,413 - MPMX19_06234 0.65 +0.6
424,413 - MPMX19_06234 0.65 -1.0
424,413 - MPMX19_06234 0.65 -1.1
424,413 - MPMX19_06234 0.65 -1.5
424,413 - MPMX19_06234 0.65 -0.4
424,413 - MPMX19_06234 0.65 -1.4
424,413 - MPMX19_06234 0.65 +0.4
424,414 + MPMX19_06234 0.65 +0.2
424,414 + MPMX19_06234 0.65 +0.5
424,414 + MPMX19_06234 0.65 +1.0
424,414 + MPMX19_06234 0.65 -0.6
424,414 + MPMX19_06234 0.65 -1.6
424,414 + MPMX19_06234 0.65 +0.7
424,414 + MPMX19_06234 0.65 -1.1
424,414 + MPMX19_06234 0.65 -2.7
424,414 + MPMX19_06234 0.65 +0.2
424,414 + MPMX19_06234 0.65 -0.3
424,414 + MPMX19_06234 0.65 -0.2
424,414 + MPMX19_06234 0.65 +0.6
424,415 - MPMX19_06234 0.65 -0.7
424,415 - MPMX19_06234 0.65 +0.2
424,415 - MPMX19_06234 0.65 -0.2
424,415 - MPMX19_06234 0.65 -0.2
424,415 - MPMX19_06234 0.65 -0.7
424,415 - MPMX19_06234 0.65 +0.0
424,415 - MPMX19_06234 0.65 -0.3
424,415 - MPMX19_06234 0.65 -1.6
424,415 - MPMX19_06234 0.65 -1.2
424,415 - MPMX19_06234 0.65 -0.3
424,415 - MPMX19_06234 0.65 -0.9
424,415 - MPMX19_06234 0.65 -0.7
424,415 - MPMX19_06234 0.65 +0.0
424,415 - MPMX19_06234 0.65 +0.0
424,415 - MPMX19_06234 0.65 -0.4
424,415 - MPMX19_06234 0.65 +0.1
424,415 - MPMX19_06234 0.65 -0.9
424,415 - MPMX19_06234 0.65 -0.6
424,447 + MPMX19_06234 0.68 +0.0
424,447 + MPMX19_06234 0.68 -2.1
424,666 + MPMX19_06234 0.86 -0.1
424,696 + MPMX19_06234 0.89 -1.6
424,696 + MPMX19_06234 0.89 +0.4
424,696 + MPMX19_06234 0.89 -0.3
424,696 + MPMX19_06234 0.89 -1.4
424,697 - MPMX19_06234 0.89 -0.3
424,738 + -2.3
424,738 + -0.2
424,738 + -0.6
424,738 + -1.6
424,738 + -1.2
424,738 + -0.6
424,738 + +0.0
424,739 - -1.2
424,739 - -0.3
424,739 - +0.6
424,739 - -1.4
424,739 - +0.3
424,739 - -0.4
424,739 - +1.2
424,739 - -0.9
424,739 - -0.7
424,754 - +0.3
424,896 + -0.3
424,919 + -1.1
424,920 - +1.2
424,922 + -0.3
424,940 + -1.2
425,045 + +0.0
425,045 + -2.5
425,045 + +0.2
425,045 + -0.4
425,045 + +0.3
425,046 - -0.9
425,046 - +0.1
425,046 - -0.9
425,046 - -0.6
425,324 + MPMX19_06235 0.38 -0.3
425,325 - MPMX19_06235 0.38 -0.7
425,643 + MPMX19_06235 0.74 -1.3
425,643 + MPMX19_06235 0.74 +0.0
425,644 - MPMX19_06235 0.74 -0.5
425,644 - MPMX19_06235 0.74 +1.0
425,644 - MPMX19_06235 0.74 -1.6
425,787 - MPMX19_06235 0.90 -0.5
425,787 - MPMX19_06235 0.90 -1.4
425,787 - MPMX19_06235 0.90 +0.1

Or see this region's nucleotide sequence