Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05120

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05119 and MPMX19_05120 are separated by 456 nucleotidesMPMX19_05120 and MPMX19_05121 are separated by 115 nucleotidesMPMX19_05121 and MPMX19_05122 are separated by 40 nucleotidesMPMX19_05122 and MPMX19_05123 are separated by 329 nucleotides MPMX19_05119: MPMX19_05119 - Glucose-6-phosphate 1-dehydrogenase, at 605,269 to 606,789 _05119 MPMX19_05120: MPMX19_05120 - 16S ribosomal RNA, at 607,246 to 608,729 _05120 MPMX19_05121: MPMX19_05121 - tRNA-Ile, at 608,845 to 608,921 _05121 MPMX19_05122: MPMX19_05122 - tRNA-Ala, at 608,962 to 609,037 _05122 MPMX19_05123: MPMX19_05123 - 23S ribosomal RNA, at 609,367 to 612,102 _05123 Position (kb) 607 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 606.273 kb on + strand, within MPMX19_05119at 606.273 kb on + strand, within MPMX19_05119at 606.273 kb on + strand, within MPMX19_05119at 606.274 kb on - strand, within MPMX19_05119at 606.274 kb on - strand, within MPMX19_05119at 606.274 kb on - strand, within MPMX19_05119at 606.274 kb on - strand, within MPMX19_05119at 606.274 kb on - strand, within MPMX19_05119at 606.301 kb on + strand, within MPMX19_05119at 606.301 kb on + strand, within MPMX19_05119at 606.301 kb on + strand, within MPMX19_05119at 606.301 kb on + strand, within MPMX19_05119at 606.301 kb on + strand, within MPMX19_05119at 606.301 kb on + strand, within MPMX19_05119at 606.302 kb on - strand, within MPMX19_05119at 606.302 kb on - strand, within MPMX19_05119at 606.302 kb on - strand, within MPMX19_05119at 606.302 kb on - strand, within MPMX19_05119at 606.302 kb on - strand, within MPMX19_05119at 606.302 kb on - strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.401 kb on + strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.402 kb on - strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.556 kb on + strand, within MPMX19_05119at 606.557 kb on - strand, within MPMX19_05119at 606.557 kb on - strand, within MPMX19_05119at 606.557 kb on - strand, within MPMX19_05119at 606.557 kb on - strand, within MPMX19_05119at 606.557 kb on - strand, within MPMX19_05119at 606.557 kb on - strand, within MPMX19_05119at 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.691 kb on + strandat 606.692 kb on - strandat 606.692 kb on - strandat 606.692 kb on - strandat 606.692 kb on - strandat 606.693 kb on + strandat 606.693 kb on + strandat 606.694 kb on - strandat 606.694 kb on - strandat 606.694 kb on - strandat 606.694 kb on - strandat 606.892 kb on - strandat 606.892 kb on - strandat 606.892 kb on - strandat 606.892 kb on - strandat 606.892 kb on - strandat 606.892 kb on - strandat 606.892 kb on - strandat 606.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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606,273 + MPMX19_05119 0.66 -0.2
606,273 + MPMX19_05119 0.66 -0.9
606,273 + MPMX19_05119 0.66 +0.2
606,274 - MPMX19_05119 0.66 -1.5
606,274 - MPMX19_05119 0.66 -0.1
606,274 - MPMX19_05119 0.66 -0.8
606,274 - MPMX19_05119 0.66 -2.2
606,274 - MPMX19_05119 0.66 -0.1
606,301 + MPMX19_05119 0.68 -1.1
606,301 + MPMX19_05119 0.68 -1.7
606,301 + MPMX19_05119 0.68 -0.5
606,301 + MPMX19_05119 0.68 +1.5
606,301 + MPMX19_05119 0.68 +0.2
606,301 + MPMX19_05119 0.68 +1.2
606,302 - MPMX19_05119 0.68 -1.5
606,302 - MPMX19_05119 0.68 -1.6
606,302 - MPMX19_05119 0.68 -2.1
606,302 - MPMX19_05119 0.68 -0.1
606,302 - MPMX19_05119 0.68 -0.3
606,302 - MPMX19_05119 0.68 +0.4
606,401 + MPMX19_05119 0.74 -1.0
606,401 + MPMX19_05119 0.74 -0.1
606,401 + MPMX19_05119 0.74 -1.8
606,401 + MPMX19_05119 0.74 -1.1
606,401 + MPMX19_05119 0.74 -1.8
606,401 + MPMX19_05119 0.74 -2.5
606,401 + MPMX19_05119 0.74 -1.6
606,401 + MPMX19_05119 0.74 -1.8
606,401 + MPMX19_05119 0.74 -1.8
606,401 + MPMX19_05119 0.74 -0.8
606,401 + MPMX19_05119 0.74 +0.2
606,401 + MPMX19_05119 0.74 -1.8
606,402 - MPMX19_05119 0.74 -2.0
606,402 - MPMX19_05119 0.74 -0.3
606,402 - MPMX19_05119 0.74 -0.5
606,402 - MPMX19_05119 0.74 -1.7
606,402 - MPMX19_05119 0.74 +0.0
606,402 - MPMX19_05119 0.74 -0.4
606,402 - MPMX19_05119 0.74 -1.2
606,402 - MPMX19_05119 0.74 -1.5
606,402 - MPMX19_05119 0.74 -2.2
606,402 - MPMX19_05119 0.74 -0.2
606,402 - MPMX19_05119 0.74 -0.1
606,402 - MPMX19_05119 0.74 -1.3
606,402 - MPMX19_05119 0.74 -0.2
606,556 + MPMX19_05119 0.85 -3.5
606,556 + MPMX19_05119 0.85 +0.3
606,556 + MPMX19_05119 0.85 -0.7
606,556 + MPMX19_05119 0.85 -1.0
606,556 + MPMX19_05119 0.85 -2.3
606,556 + MPMX19_05119 0.85 -0.4
606,556 + MPMX19_05119 0.85 -0.5
606,556 + MPMX19_05119 0.85 -1.7
606,556 + MPMX19_05119 0.85 -1.8
606,556 + MPMX19_05119 0.85 -1.5
606,557 - MPMX19_05119 0.85 -1.1
606,557 - MPMX19_05119 0.85 -2.5
606,557 - MPMX19_05119 0.85 -1.8
606,557 - MPMX19_05119 0.85 -2.1
606,557 - MPMX19_05119 0.85 +1.8
606,557 - MPMX19_05119 0.85 -2.2
606,691 + -2.2
606,691 + -0.8
606,691 + -1.7
606,691 + -0.7
606,691 + -2.1
606,691 + -2.6
606,691 + -1.2
606,691 + -1.0
606,691 + +0.1
606,691 + -1.7
606,691 + -0.9
606,691 + -1.4
606,692 - -2.9
606,692 - -2.0
606,692 - -1.8
606,692 - -0.3
606,693 + -1.4
606,693 + +0.2
606,694 - -1.1
606,694 - +0.5
606,694 - -0.3
606,694 - +0.2
606,892 - -0.9
606,892 - -1.5
606,892 - -0.4
606,892 - -0.8
606,892 - +0.1
606,892 - -2.8
606,892 - -1.7
606,892 - +0.7

Or see this region's nucleotide sequence