Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04741

Experiment: NL-CCM_agar

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04740 and MPMX19_04741 are separated by 346 nucleotidesMPMX19_04741 and MPMX19_04742 overlap by 8 nucleotides MPMX19_04740: MPMX19_04740 - hypothetical protein, at 130,776 to 131,810 _04740 MPMX19_04741: MPMX19_04741 - Formyltransferase/hydrolase complex Fhc subunit B, at 132,157 to 133,353 _04741 MPMX19_04742: MPMX19_04742 - Formyltransferase/hydrolase complex Fhc subunit A, at 133,346 to 135,034 _04742 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 131.186 kb on - strand, within MPMX19_04740at 131.186 kb on - strand, within MPMX19_04740at 131.186 kb on - strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.815 kb on + strandat 131.815 kb on + strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.853 kb on + strandat 131.858 kb on - strandat 131.858 kb on - strandat 131.875 kb on + strandat 131.911 kb on - strandat 131.990 kb on - strandat 131.993 kb on + strandat 132.031 kb on + strandat 132.031 kb on + strandat 132.032 kb on - strandat 132.043 kb on + strandat 132.044 kb on - strandat 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.431 kb on - strandat 133.431 kb on - strandat 133.431 kb on - strandat 133.679 kb on + strand, within MPMX19_04742at 133.680 kb on - strand, within MPMX19_04742at 133.680 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.862 kb on + strand, within MPMX19_04742at 133.862 kb on + strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
remove
131,186 - MPMX19_04740 0.40 -1.8
131,186 - MPMX19_04740 0.40 -0.5
131,186 - MPMX19_04740 0.40 +0.3
131,596 + MPMX19_04740 0.79 +2.0
131,596 + MPMX19_04740 0.79 -0.1
131,596 + MPMX19_04740 0.79 +0.5
131,597 - MPMX19_04740 0.79 -0.0
131,597 - MPMX19_04740 0.79 -0.7
131,597 - MPMX19_04740 0.79 +0.5
131,597 - MPMX19_04740 0.79 -0.1
131,597 - MPMX19_04740 0.79 -0.2
131,597 - MPMX19_04740 0.79 -0.8
131,815 + -0.6
131,815 + +0.4
131,816 - -0.4
131,816 - -1.1
131,816 - -0.1
131,816 - +0.5
131,853 + -1.3
131,858 - -1.3
131,858 - +1.0
131,875 + -0.8
131,911 - -0.1
131,990 - -1.1
131,993 + +0.5
132,031 + +0.0
132,031 + -1.2
132,032 - -0.6
132,043 + +0.3
132,044 - -1.5
132,931 + MPMX19_04741 0.65 -0.5
132,931 + MPMX19_04741 0.65 +0.6
132,931 + MPMX19_04741 0.65 -1.3
132,931 + MPMX19_04741 0.65 -0.8
132,931 + MPMX19_04741 0.65 +0.5
132,931 + MPMX19_04741 0.65 -0.2
132,931 + MPMX19_04741 0.65 +1.5
132,931 + MPMX19_04741 0.65 -1.0
132,931 + MPMX19_04741 0.65 +0.2
132,931 + MPMX19_04741 0.65 +0.3
132,931 + MPMX19_04741 0.65 +0.6
132,932 - MPMX19_04741 0.65 -0.5
132,932 - MPMX19_04741 0.65 -0.1
132,932 - MPMX19_04741 0.65 +0.4
132,932 - MPMX19_04741 0.65 -2.3
132,932 - MPMX19_04741 0.65 +0.1
132,932 - MPMX19_04741 0.65 -1.4
132,932 - MPMX19_04741 0.65 -1.1
132,932 - MPMX19_04741 0.65 +0.0
132,932 - MPMX19_04741 0.65 +0.8
132,932 - MPMX19_04741 0.65 +0.1
132,950 - MPMX19_04741 0.66 +1.0
132,950 - MPMX19_04741 0.66 +0.3
132,950 - MPMX19_04741 0.66 -1.1
133,358 + +0.6
133,358 + -1.2
133,358 + +0.5
133,358 + +1.9
133,358 + -1.8
133,358 + +0.2
133,358 + +0.2
133,358 + +0.5
133,358 + -0.2
133,359 - -0.3
133,359 - +0.7
133,359 - -0.8
133,359 - -0.1
133,359 - -1.0
133,359 - -0.5
133,359 - +0.7
133,359 - +0.7
133,359 - -1.2
133,430 + -0.5
133,430 + -1.0
133,430 + -1.4
133,430 + -0.2
133,431 - -1.3
133,431 - +0.9
133,431 - +0.4
133,679 + MPMX19_04742 0.20 -1.3
133,680 - MPMX19_04742 0.20 +1.1
133,680 - MPMX19_04742 0.20 -0.8
133,695 - MPMX19_04742 0.21 -0.8
133,695 - MPMX19_04742 0.21 +0.1
133,695 - MPMX19_04742 0.21 -0.6
133,787 + MPMX19_04742 0.26 -1.4
133,787 + MPMX19_04742 0.26 -0.7
133,787 + MPMX19_04742 0.26 +0.3
133,787 + MPMX19_04742 0.26 +0.9
133,787 + MPMX19_04742 0.26 -0.4
133,788 - MPMX19_04742 0.26 -0.5
133,788 - MPMX19_04742 0.26 -2.0
133,788 - MPMX19_04742 0.26 +0.1
133,788 - MPMX19_04742 0.26 -0.9
133,862 + MPMX19_04742 0.31 -1.1
133,862 + MPMX19_04742 0.31 -0.1
133,863 - MPMX19_04742 0.31 -2.1
133,863 - MPMX19_04742 0.31 +0.8
133,863 - MPMX19_04742 0.31 -0.2
133,863 - MPMX19_04742 0.31 +0.0
133,863 - MPMX19_04742 0.31 +0.2
133,863 - MPMX19_04742 0.31 -1.3
133,863 - MPMX19_04742 0.31 +0.4
133,863 - MPMX19_04742 0.31 -1.7
134,168 + MPMX19_04742 0.49 +0.9
134,168 + MPMX19_04742 0.49 +1.0
134,168 + MPMX19_04742 0.49 -0.5
134,168 + MPMX19_04742 0.49 +0.4
134,168 + MPMX19_04742 0.49 -1.3
134,168 + MPMX19_04742 0.49 -0.8
134,168 + MPMX19_04742 0.49 +0.5
134,169 - MPMX19_04742 0.49 -1.1
134,169 - MPMX19_04742 0.49 -0.8
134,169 - MPMX19_04742 0.49 -1.0
134,169 - MPMX19_04742 0.49 +1.0
134,169 - MPMX19_04742 0.49 +0.2
134,169 - MPMX19_04742 0.49 +1.5
134,169 - MPMX19_04742 0.49 +0.3

Or see this region's nucleotide sequence