Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04389

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04386 and MPMX19_04387 are separated by 16 nucleotidesMPMX19_04387 and MPMX19_04388 overlap by 4 nucleotidesMPMX19_04388 and MPMX19_04389 are separated by 62 nucleotidesMPMX19_04389 and MPMX19_04390 are separated by 151 nucleotides MPMX19_04386: MPMX19_04386 - Cytosine deaminase, at 752,585 to 753,865 _04386 MPMX19_04387: MPMX19_04387 - hypothetical protein, at 753,882 to 754,127 _04387 MPMX19_04388: MPMX19_04388 - hypothetical protein, at 754,124 to 754,315 _04388 MPMX19_04389: MPMX19_04389 - Histidinol-phosphate aminotransferase, at 754,378 to 755,469 _04389 MPMX19_04390: MPMX19_04390 - hypothetical protein, at 755,621 to 756,517 _04390 Position (kb) 754 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.437 kb on + strand, within MPMX19_04386at 753.438 kb on - strand, within MPMX19_04386at 753.438 kb on - strand, within MPMX19_04386at 753.438 kb on - strand, within MPMX19_04386at 753.438 kb on - strand, within MPMX19_04386at 753.438 kb on - strand, within MPMX19_04386at 753.438 kb on - strand, within MPMX19_04386at 753.568 kb on + strand, within MPMX19_04386at 753.568 kb on + strand, within MPMX19_04386at 753.569 kb on - strand, within MPMX19_04386at 753.569 kb on - strand, within MPMX19_04386at 753.569 kb on - strand, within MPMX19_04386at 753.669 kb on - strand, within MPMX19_04386at 753.669 kb on - strand, within MPMX19_04386at 753.705 kb on + strand, within MPMX19_04386at 753.705 kb on + strand, within MPMX19_04386at 753.705 kb on + strand, within MPMX19_04386at 753.705 kb on + strand, within MPMX19_04386at 753.706 kb on - strand, within MPMX19_04386at 753.706 kb on - strand, within MPMX19_04386at 753.706 kb on - strand, within MPMX19_04386at 753.706 kb on - strand, within MPMX19_04386at 754.006 kb on + strand, within MPMX19_04387at 754.006 kb on + strand, within MPMX19_04387at 754.006 kb on + strand, within MPMX19_04387at 754.006 kb on + strand, within MPMX19_04387at 754.006 kb on + strand, within MPMX19_04387at 754.006 kb on + strand, within MPMX19_04387at 754.006 kb on + strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.007 kb on - strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.082 kb on + strand, within MPMX19_04387at 754.083 kb on - strand, within MPMX19_04387at 754.083 kb on - strand, within MPMX19_04387at 754.083 kb on - strand, within MPMX19_04387at 754.083 kb on - strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.084 kb on + strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.085 kb on - strand, within MPMX19_04387at 754.123 kb on + strandat 754.123 kb on + strandat 754.123 kb on + strandat 754.123 kb on + strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.124 kb on - strandat 754.136 kb on + strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.479 kb on - strandat 755.579 kb on + strandat 755.646 kb on + strandat 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.213 kb on + strand, within MPMX19_04390at 756.214 kb on - strand, within MPMX19_04390

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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753,437 + MPMX19_04386 0.67 -1.1
753,437 + MPMX19_04386 0.67 -1.6
753,437 + MPMX19_04386 0.67 +0.7
753,437 + MPMX19_04386 0.67 -0.8
753,437 + MPMX19_04386 0.67 -0.7
753,437 + MPMX19_04386 0.67 +0.7
753,437 + MPMX19_04386 0.67 -1.2
753,437 + MPMX19_04386 0.67 +0.5
753,437 + MPMX19_04386 0.67 +0.6
753,438 - MPMX19_04386 0.67 +0.2
753,438 - MPMX19_04386 0.67 -0.2
753,438 - MPMX19_04386 0.67 -0.7
753,438 - MPMX19_04386 0.67 -1.2
753,438 - MPMX19_04386 0.67 +0.6
753,438 - MPMX19_04386 0.67 -1.7
753,568 + MPMX19_04386 0.77 -1.4
753,568 + MPMX19_04386 0.77 -3.4
753,569 - MPMX19_04386 0.77 +0.4
753,569 - MPMX19_04386 0.77 +0.2
753,569 - MPMX19_04386 0.77 -0.5
753,669 - MPMX19_04386 0.85 -0.7
753,669 - MPMX19_04386 0.85 +0.3
753,705 + MPMX19_04386 0.87 -1.6
753,705 + MPMX19_04386 0.87 +0.8
753,705 + MPMX19_04386 0.87 +0.1
753,705 + MPMX19_04386 0.87 -0.3
753,706 - MPMX19_04386 0.88 -1.0
753,706 - MPMX19_04386 0.88 +0.5
753,706 - MPMX19_04386 0.88 +1.0
753,706 - MPMX19_04386 0.88 -0.9
754,006 + MPMX19_04387 0.50 -0.2
754,006 + MPMX19_04387 0.50 +0.6
754,006 + MPMX19_04387 0.50 -0.3
754,006 + MPMX19_04387 0.50 -1.0
754,006 + MPMX19_04387 0.50 -0.1
754,006 + MPMX19_04387 0.50 -1.2
754,006 + MPMX19_04387 0.50 -1.3
754,007 - MPMX19_04387 0.51 -0.7
754,007 - MPMX19_04387 0.51 +0.4
754,007 - MPMX19_04387 0.51 -2.7
754,007 - MPMX19_04387 0.51 -1.1
754,007 - MPMX19_04387 0.51 -0.7
754,007 - MPMX19_04387 0.51 +0.1
754,007 - MPMX19_04387 0.51 -0.7
754,007 - MPMX19_04387 0.51 -0.5
754,007 - MPMX19_04387 0.51 -0.8
754,007 - MPMX19_04387 0.51 -0.9
754,007 - MPMX19_04387 0.51 -1.0
754,007 - MPMX19_04387 0.51 -1.6
754,082 + MPMX19_04387 0.81 -0.4
754,082 + MPMX19_04387 0.81 +0.7
754,082 + MPMX19_04387 0.81 -2.2
754,082 + MPMX19_04387 0.81 -1.4
754,082 + MPMX19_04387 0.81 +0.0
754,082 + MPMX19_04387 0.81 +0.1
754,082 + MPMX19_04387 0.81 -1.7
754,082 + MPMX19_04387 0.81 +1.0
754,083 - MPMX19_04387 0.82 +1.1
754,083 - MPMX19_04387 0.82 -1.4
754,083 - MPMX19_04387 0.82 -0.9
754,083 - MPMX19_04387 0.82 -1.7
754,084 + MPMX19_04387 0.82 +0.6
754,084 + MPMX19_04387 0.82 -1.7
754,084 + MPMX19_04387 0.82 -1.1
754,084 + MPMX19_04387 0.82 -0.2
754,084 + MPMX19_04387 0.82 -0.3
754,084 + MPMX19_04387 0.82 +0.0
754,084 + MPMX19_04387 0.82 -0.6
754,084 + MPMX19_04387 0.82 +0.1
754,084 + MPMX19_04387 0.82 -1.3
754,084 + MPMX19_04387 0.82 +0.1
754,084 + MPMX19_04387 0.82 -0.7
754,084 + MPMX19_04387 0.82 -1.6
754,084 + MPMX19_04387 0.82 -0.9
754,084 + MPMX19_04387 0.82 -0.9
754,084 + MPMX19_04387 0.82 +1.1
754,084 + MPMX19_04387 0.82 -0.7
754,084 + MPMX19_04387 0.82 -1.9
754,084 + MPMX19_04387 0.82 +1.2
754,084 + MPMX19_04387 0.82 -1.4
754,085 - MPMX19_04387 0.83 +0.0
754,085 - MPMX19_04387 0.83 +0.3
754,085 - MPMX19_04387 0.83 -2.0
754,085 - MPMX19_04387 0.83 +0.3
754,085 - MPMX19_04387 0.83 -2.1
754,085 - MPMX19_04387 0.83 -0.6
754,085 - MPMX19_04387 0.83 -1.9
754,085 - MPMX19_04387 0.83 +0.8
754,085 - MPMX19_04387 0.83 -0.4
754,085 - MPMX19_04387 0.83 -0.5
754,085 - MPMX19_04387 0.83 -1.0
754,085 - MPMX19_04387 0.83 +0.0
754,085 - MPMX19_04387 0.83 +0.2
754,085 - MPMX19_04387 0.83 -0.9
754,085 - MPMX19_04387 0.83 +0.3
754,085 - MPMX19_04387 0.83 -0.4
754,085 - MPMX19_04387 0.83 +0.9
754,085 - MPMX19_04387 0.83 -0.7
754,085 - MPMX19_04387 0.83 +0.0
754,085 - MPMX19_04387 0.83 +0.2
754,085 - MPMX19_04387 0.83 -0.2
754,085 - MPMX19_04387 0.83 +0.3
754,085 - MPMX19_04387 0.83 -1.4
754,085 - MPMX19_04387 0.83 -1.4
754,085 - MPMX19_04387 0.83 -0.9
754,123 + -0.6
754,123 + -1.4
754,123 + -0.6
754,123 + -1.2
754,124 - +1.8
754,124 - +0.0
754,124 - +0.3
754,124 - +0.2
754,124 - -1.0
754,124 - -0.2
754,124 - -1.4
754,124 - -1.4
754,124 - -0.2
754,124 - -1.0
754,124 - -1.5
754,124 - -1.0
754,124 - +0.2
754,124 - +0.4
754,136 + +0.3
755,479 - -0.7
755,479 - +1.1
755,479 - -1.9
755,479 - -1.5
755,479 - -0.4
755,479 - +0.2
755,479 - +0.9
755,479 - -0.2
755,579 + +0.3
755,646 + +0.4
756,213 + MPMX19_04390 0.66 -0.7
756,213 + MPMX19_04390 0.66 -0.4
756,213 + MPMX19_04390 0.66 -0.6
756,213 + MPMX19_04390 0.66 -0.7
756,214 - MPMX19_04390 0.66 -0.4

Or see this region's nucleotide sequence