Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04276

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04274 and MPMX19_04275 overlap by 4 nucleotidesMPMX19_04275 and MPMX19_04276 overlap by 4 nucleotidesMPMX19_04276 and MPMX19_04277 are separated by 397 nucleotides MPMX19_04274: MPMX19_04274 - RNA polymerase sigma-H factor, at 634,961 to 635,497 _04274 MPMX19_04275: MPMX19_04275 - hypothetical protein, at 635,494 to 635,922 _04275 MPMX19_04276: MPMX19_04276 - hypothetical protein, at 635,919 to 636,362 _04276 MPMX19_04277: MPMX19_04277 - Protein YhgF, at 636,760 to 639,114 _04277 Position (kb) 635 636 637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 634.930 kb on + strandat 634.931 kb on - strandat 635.159 kb on + strand, within MPMX19_04274at 635.159 kb on + strand, within MPMX19_04274at 635.159 kb on + strand, within MPMX19_04274at 635.159 kb on + strand, within MPMX19_04274at 635.160 kb on - strand, within MPMX19_04274at 635.160 kb on - strand, within MPMX19_04274at 635.160 kb on - strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.189 kb on + strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.190 kb on - strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.351 kb on + strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.352 kb on - strand, within MPMX19_04274at 635.388 kb on + strand, within MPMX19_04274at 635.518 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.530 kb on + strandat 635.902 kb on + strandat 635.902 kb on + strandat 635.902 kb on + strandat 635.902 kb on + strandat 635.903 kb on - strandat 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.981 kb on + strand, within MPMX19_04276at 635.982 kb on - strand, within MPMX19_04276at 636.488 kb on + strandat 636.508 kb on + strandat 636.508 kb on + strandat 636.508 kb on + strandat 636.508 kb on + strandat 636.508 kb on + strandat 636.551 kb on + strandat 636.552 kb on - strandat 636.552 kb on - strandat 636.552 kb on - strandat 636.552 kb on - strandat 636.553 kb on + strandat 636.553 kb on + strandat 636.553 kb on + strandat 636.554 kb on - strandat 636.554 kb on - strandat 636.609 kb on + strandat 636.609 kb on + strandat 636.610 kb on - strandat 636.711 kb on + strandat 636.711 kb on + strandat 636.711 kb on + strandat 636.712 kb on - strandat 636.712 kb on - strandat 636.712 kb on - strandat 636.712 kb on - strandat 636.937 kb on + strandat 636.937 kb on + strandat 636.938 kb on - strandat 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.063 kb on + strand, within MPMX19_04277at 637.064 kb on - strand, within MPMX19_04277at 637.064 kb on - strand, within MPMX19_04277at 637.064 kb on - strand, within MPMX19_04277at 637.064 kb on - strand, within MPMX19_04277at 637.064 kb on - strand, within MPMX19_04277at 637.064 kb on - strand, within MPMX19_04277at 637.064 kb on - strand, within MPMX19_04277at 637.072 kb on + strand, within MPMX19_04277at 637.072 kb on + strand, within MPMX19_04277at 637.072 kb on + strand, within MPMX19_04277at 637.072 kb on + strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.073 kb on - strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.155 kb on + strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277at 637.156 kb on - strand, within MPMX19_04277

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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634,930 + +0.0
634,931 - -0.5
635,159 + MPMX19_04274 0.37 -0.8
635,159 + MPMX19_04274 0.37 -0.6
635,159 + MPMX19_04274 0.37 +0.9
635,159 + MPMX19_04274 0.37 -0.2
635,160 - MPMX19_04274 0.37 -3.2
635,160 - MPMX19_04274 0.37 -1.7
635,160 - MPMX19_04274 0.37 -0.6
635,189 + MPMX19_04274 0.42 +0.2
635,189 + MPMX19_04274 0.42 +0.3
635,189 + MPMX19_04274 0.42 +1.2
635,189 + MPMX19_04274 0.42 -0.4
635,189 + MPMX19_04274 0.42 +2.6
635,189 + MPMX19_04274 0.42 -0.1
635,189 + MPMX19_04274 0.42 -1.2
635,189 + MPMX19_04274 0.42 -1.4
635,189 + MPMX19_04274 0.42 -1.2
635,190 - MPMX19_04274 0.43 -0.4
635,190 - MPMX19_04274 0.43 +0.1
635,190 - MPMX19_04274 0.43 -0.8
635,190 - MPMX19_04274 0.43 -0.7
635,190 - MPMX19_04274 0.43 -1.2
635,190 - MPMX19_04274 0.43 +1.8
635,351 + MPMX19_04274 0.73 -1.0
635,351 + MPMX19_04274 0.73 +0.1
635,351 + MPMX19_04274 0.73 +0.3
635,351 + MPMX19_04274 0.73 +0.0
635,351 + MPMX19_04274 0.73 -1.1
635,351 + MPMX19_04274 0.73 -1.2
635,352 - MPMX19_04274 0.73 -0.5
635,352 - MPMX19_04274 0.73 +0.0
635,352 - MPMX19_04274 0.73 +0.8
635,352 - MPMX19_04274 0.73 -1.7
635,352 - MPMX19_04274 0.73 -0.4
635,352 - MPMX19_04274 0.73 -1.0
635,352 - MPMX19_04274 0.73 +0.1
635,352 - MPMX19_04274 0.73 +0.4
635,388 + MPMX19_04274 0.80 -1.1
635,518 + -2.4
635,530 + +0.3
635,530 + +0.5
635,530 + -0.6
635,530 + -0.3
635,530 + -2.4
635,530 + -2.0
635,530 + -1.3
635,902 + -2.2
635,902 + -0.7
635,902 + -0.5
635,902 + -1.1
635,903 - -1.6
635,981 + MPMX19_04276 0.14 -0.6
635,981 + MPMX19_04276 0.14 -1.2
635,981 + MPMX19_04276 0.14 -1.3
635,981 + MPMX19_04276 0.14 -2.0
635,981 + MPMX19_04276 0.14 +0.6
635,982 - MPMX19_04276 0.14 -2.2
636,488 + -0.1
636,508 + +0.3
636,508 + -2.2
636,508 + -2.0
636,508 + -0.5
636,508 + -0.1
636,551 + +0.2
636,552 - -1.1
636,552 - -0.3
636,552 - +1.0
636,552 - -1.0
636,553 + -2.2
636,553 + +0.0
636,553 + -1.1
636,554 - +0.9
636,554 - -1.2
636,609 + +0.0
636,609 + -0.8
636,610 - -2.4
636,711 + -0.1
636,711 + -1.0
636,711 + +0.4
636,712 - +0.6
636,712 - -0.7
636,712 - -1.8
636,712 - -1.2
636,937 + +0.3
636,937 + -0.6
636,938 - -1.0
637,063 + MPMX19_04277 0.13 +0.6
637,063 + MPMX19_04277 0.13 +0.3
637,063 + MPMX19_04277 0.13 -0.5
637,063 + MPMX19_04277 0.13 -0.8
637,063 + MPMX19_04277 0.13 +0.0
637,063 + MPMX19_04277 0.13 -0.7
637,063 + MPMX19_04277 0.13 -0.8
637,063 + MPMX19_04277 0.13 -1.7
637,063 + MPMX19_04277 0.13 -0.8
637,063 + MPMX19_04277 0.13 -1.1
637,063 + MPMX19_04277 0.13 -1.4
637,063 + MPMX19_04277 0.13 +0.2
637,063 + MPMX19_04277 0.13 -1.1
637,064 - MPMX19_04277 0.13 +0.4
637,064 - MPMX19_04277 0.13 -1.0
637,064 - MPMX19_04277 0.13 +0.6
637,064 - MPMX19_04277 0.13 -0.5
637,064 - MPMX19_04277 0.13 -1.8
637,064 - MPMX19_04277 0.13 +0.2
637,064 - MPMX19_04277 0.13 -1.4
637,072 + MPMX19_04277 0.13 -3.2
637,072 + MPMX19_04277 0.13 +0.2
637,072 + MPMX19_04277 0.13 +0.3
637,072 + MPMX19_04277 0.13 +0.3
637,073 - MPMX19_04277 0.13 -0.7
637,073 - MPMX19_04277 0.13 -0.5
637,073 - MPMX19_04277 0.13 -2.0
637,073 - MPMX19_04277 0.13 -1.7
637,073 - MPMX19_04277 0.13 -0.8
637,073 - MPMX19_04277 0.13 -1.2
637,073 - MPMX19_04277 0.13 -0.7
637,073 - MPMX19_04277 0.13 -0.2
637,155 + MPMX19_04277 0.17 -1.0
637,155 + MPMX19_04277 0.17 -0.7
637,155 + MPMX19_04277 0.17 -0.4
637,155 + MPMX19_04277 0.17 -1.2
637,155 + MPMX19_04277 0.17 +0.2
637,155 + MPMX19_04277 0.17 +2.4
637,155 + MPMX19_04277 0.17 +0.8
637,155 + MPMX19_04277 0.17 -1.0
637,155 + MPMX19_04277 0.17 +0.4
637,155 + MPMX19_04277 0.17 -1.3
637,155 + MPMX19_04277 0.17 -0.3
637,155 + MPMX19_04277 0.17 -1.4
637,155 + MPMX19_04277 0.17 -1.1
637,155 + MPMX19_04277 0.17 +0.3
637,155 + MPMX19_04277 0.17 +0.3
637,155 + MPMX19_04277 0.17 -0.2
637,156 - MPMX19_04277 0.17 -0.4
637,156 - MPMX19_04277 0.17 -1.4
637,156 - MPMX19_04277 0.17 +0.0
637,156 - MPMX19_04277 0.17 +1.2
637,156 - MPMX19_04277 0.17 -1.0
637,156 - MPMX19_04277 0.17 -1.2
637,156 - MPMX19_04277 0.17 -0.4
637,156 - MPMX19_04277 0.17 -0.4
637,156 - MPMX19_04277 0.17 -0.4
637,156 - MPMX19_04277 0.17 -1.1
637,156 - MPMX19_04277 0.17 +0.0
637,156 - MPMX19_04277 0.17 -1.7

Or see this region's nucleotide sequence