Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04093

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04091 and MPMX19_04092 overlap by 1 nucleotidesMPMX19_04092 and MPMX19_04093 are separated by 34 nucleotidesMPMX19_04093 and MPMX19_04094 are separated by 62 nucleotides MPMX19_04091: MPMX19_04091 - Chemotaxis protein PomA, at 396,378 to 397,316 _04091 MPMX19_04092: MPMX19_04092 - Flagellar motor switch protein FliN, at 397,316 to 397,633 _04092 MPMX19_04093: MPMX19_04093 - hypothetical protein, at 397,668 to 398,444 _04093 MPMX19_04094: MPMX19_04094 - Flagellar M-ring protein, at 398,507 to 400,168 _04094 Position (kb) 397 398 399Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.413 kb on + strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.414 kb on - strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.539 kb on + strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.540 kb on - strand, within MPMX19_04092at 397.578 kb on + strand, within MPMX19_04092at 397.578 kb on + strand, within MPMX19_04092at 397.579 kb on - strand, within MPMX19_04092at 397.579 kb on - strand, within MPMX19_04092at 397.579 kb on - strand, within MPMX19_04092at 397.669 kb on + strandat 397.669 kb on + strandat 397.670 kb on - strandat 397.670 kb on - strandat 398.155 kb on + strand, within MPMX19_04093at 398.156 kb on - strand, within MPMX19_04093at 398.156 kb on - strand, within MPMX19_04093at 398.203 kb on + strand, within MPMX19_04093at 398.204 kb on - strand, within MPMX19_04093at 398.251 kb on + strand, within MPMX19_04093at 398.251 kb on + strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.252 kb on - strand, within MPMX19_04093at 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.520 kb on + strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 398.521 kb on - strandat 399.045 kb on + strand, within MPMX19_04094at 399.046 kb on - strand, within MPMX19_04094at 399.046 kb on - strand, within MPMX19_04094at 399.046 kb on - strand, within MPMX19_04094at 399.046 kb on - strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.075 kb on + strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.076 kb on - strand, within MPMX19_04094at 399.162 kb on + strand, within MPMX19_04094at 399.162 kb on + strand, within MPMX19_04094at 399.162 kb on + strand, within MPMX19_04094at 399.162 kb on + strand, within MPMX19_04094at 399.163 kb on - strand, within MPMX19_04094at 399.163 kb on - strand, within MPMX19_04094at 399.163 kb on - strand, within MPMX19_04094at 399.163 kb on - strand, within MPMX19_04094at 399.163 kb on - strand, within MPMX19_04094at 399.163 kb on - strand, within MPMX19_04094at 399.411 kb on + strand, within MPMX19_04094

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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397,413 + MPMX19_04092 0.31 -2.3
397,413 + MPMX19_04092 0.31 -1.7
397,413 + MPMX19_04092 0.31 +0.4
397,413 + MPMX19_04092 0.31 -1.1
397,413 + MPMX19_04092 0.31 -2.9
397,413 + MPMX19_04092 0.31 -1.0
397,413 + MPMX19_04092 0.31 -2.7
397,413 + MPMX19_04092 0.31 -1.8
397,413 + MPMX19_04092 0.31 -0.6
397,413 + MPMX19_04092 0.31 -3.8
397,413 + MPMX19_04092 0.31 -0.9
397,414 - MPMX19_04092 0.31 -1.1
397,414 - MPMX19_04092 0.31 -0.9
397,414 - MPMX19_04092 0.31 -2.3
397,414 - MPMX19_04092 0.31 -1.2
397,414 - MPMX19_04092 0.31 -3.4
397,414 - MPMX19_04092 0.31 -2.1
397,414 - MPMX19_04092 0.31 -1.2
397,414 - MPMX19_04092 0.31 -1.2
397,414 - MPMX19_04092 0.31 -0.2
397,414 - MPMX19_04092 0.31 -0.3
397,414 - MPMX19_04092 0.31 +0.2
397,414 - MPMX19_04092 0.31 -0.4
397,414 - MPMX19_04092 0.31 -2.1
397,539 + MPMX19_04092 0.70 -1.2
397,539 + MPMX19_04092 0.70 -0.4
397,539 + MPMX19_04092 0.70 -1.0
397,539 + MPMX19_04092 0.70 -2.1
397,539 + MPMX19_04092 0.70 -0.2
397,539 + MPMX19_04092 0.70 -0.3
397,539 + MPMX19_04092 0.70 -1.6
397,539 + MPMX19_04092 0.70 -0.4
397,539 + MPMX19_04092 0.70 -0.7
397,539 + MPMX19_04092 0.70 +0.6
397,539 + MPMX19_04092 0.70 -1.0
397,539 + MPMX19_04092 0.70 +1.2
397,539 + MPMX19_04092 0.70 -1.6
397,539 + MPMX19_04092 0.70 -2.1
397,539 + MPMX19_04092 0.70 -1.2
397,540 - MPMX19_04092 0.70 -1.2
397,540 - MPMX19_04092 0.70 +0.0
397,540 - MPMX19_04092 0.70 -1.9
397,540 - MPMX19_04092 0.70 -1.6
397,540 - MPMX19_04092 0.70 -0.7
397,540 - MPMX19_04092 0.70 -1.5
397,540 - MPMX19_04092 0.70 -1.0
397,540 - MPMX19_04092 0.70 -0.3
397,578 + MPMX19_04092 0.82 -0.6
397,578 + MPMX19_04092 0.82 -2.3
397,579 - MPMX19_04092 0.83 -2.7
397,579 - MPMX19_04092 0.83 -1.7
397,579 - MPMX19_04092 0.83 -1.8
397,669 + -0.7
397,669 + -0.4
397,670 - -1.0
397,670 - -1.6
398,155 + MPMX19_04093 0.63 +1.1
398,156 - MPMX19_04093 0.63 -1.6
398,156 - MPMX19_04093 0.63 -1.3
398,203 + MPMX19_04093 0.69 -2.0
398,204 - MPMX19_04093 0.69 -1.4
398,251 + MPMX19_04093 0.75 -0.4
398,251 + MPMX19_04093 0.75 -0.7
398,252 - MPMX19_04093 0.75 -1.2
398,252 - MPMX19_04093 0.75 -2.0
398,252 - MPMX19_04093 0.75 -4.1
398,252 - MPMX19_04093 0.75 -0.3
398,252 - MPMX19_04093 0.75 -1.6
398,520 + -0.2
398,520 + +0.1
398,520 + -2.7
398,520 + -0.8
398,520 + -0.1
398,520 + -0.6
398,520 + -1.3
398,520 + -1.5
398,520 + -1.9
398,520 + +1.6
398,521 - -2.2
398,521 - -1.4
398,521 - -3.1
398,521 - -0.4
398,521 - -0.7
398,521 - -0.3
398,521 - -0.9
398,521 - +0.6
398,521 - -0.2
399,045 + MPMX19_04094 0.32 -2.4
399,046 - MPMX19_04094 0.32 -2.9
399,046 - MPMX19_04094 0.32 -1.5
399,046 - MPMX19_04094 0.32 -2.4
399,046 - MPMX19_04094 0.32 -2.2
399,075 + MPMX19_04094 0.34 +0.2
399,075 + MPMX19_04094 0.34 -0.9
399,075 + MPMX19_04094 0.34 -0.9
399,075 + MPMX19_04094 0.34 -1.0
399,075 + MPMX19_04094 0.34 -0.5
399,075 + MPMX19_04094 0.34 -1.8
399,075 + MPMX19_04094 0.34 +0.6
399,075 + MPMX19_04094 0.34 -2.1
399,075 + MPMX19_04094 0.34 -1.7
399,075 + MPMX19_04094 0.34 -0.5
399,075 + MPMX19_04094 0.34 -0.4
399,075 + MPMX19_04094 0.34 -1.9
399,075 + MPMX19_04094 0.34 -0.6
399,075 + MPMX19_04094 0.34 +0.3
399,075 + MPMX19_04094 0.34 +0.3
399,075 + MPMX19_04094 0.34 +0.0
399,075 + MPMX19_04094 0.34 -0.4
399,075 + MPMX19_04094 0.34 -2.0
399,075 + MPMX19_04094 0.34 -1.0
399,076 - MPMX19_04094 0.34 -2.4
399,076 - MPMX19_04094 0.34 -0.7
399,076 - MPMX19_04094 0.34 -2.7
399,076 - MPMX19_04094 0.34 -0.7
399,076 - MPMX19_04094 0.34 -0.8
399,076 - MPMX19_04094 0.34 -0.4
399,076 - MPMX19_04094 0.34 -1.9
399,076 - MPMX19_04094 0.34 -1.1
399,076 - MPMX19_04094 0.34 -1.3
399,076 - MPMX19_04094 0.34 -0.2
399,076 - MPMX19_04094 0.34 -1.4
399,076 - MPMX19_04094 0.34 -0.7
399,076 - MPMX19_04094 0.34 +1.0
399,076 - MPMX19_04094 0.34 -1.1
399,076 - MPMX19_04094 0.34 -1.7
399,076 - MPMX19_04094 0.34 -1.6
399,076 - MPMX19_04094 0.34 -0.9
399,076 - MPMX19_04094 0.34 -0.7
399,076 - MPMX19_04094 0.34 -2.0
399,076 - MPMX19_04094 0.34 -2.0
399,076 - MPMX19_04094 0.34 -0.7
399,076 - MPMX19_04094 0.34 -0.9
399,076 - MPMX19_04094 0.34 -1.7
399,162 + MPMX19_04094 0.39 +0.5
399,162 + MPMX19_04094 0.39 +0.3
399,162 + MPMX19_04094 0.39 -0.6
399,162 + MPMX19_04094 0.39 -0.7
399,163 - MPMX19_04094 0.39 -1.2
399,163 - MPMX19_04094 0.39 -0.9
399,163 - MPMX19_04094 0.39 -2.4
399,163 - MPMX19_04094 0.39 -0.9
399,163 - MPMX19_04094 0.39 -0.3
399,163 - MPMX19_04094 0.39 +1.2
399,411 + MPMX19_04094 0.54 -1.2

Or see this region's nucleotide sequence