Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03556 and MPMX19_03557 are separated by 162 nucleotides MPMX19_03557 and MPMX19_03558 are separated by 27 nucleotides MPMX19_03558 and MPMX19_03559 are separated by 63 nucleotides
MPMX19_03556: MPMX19_03556 - Putative isomerase YbhH, at 975,835 to 976,935
_03556
MPMX19_03557: MPMX19_03557 - HTH-type transcriptional regulator CynR, at 977,098 to 977,988
_03557
MPMX19_03558: MPMX19_03558 - hypothetical protein, at 978,016 to 978,396
_03558
MPMX19_03559: MPMX19_03559 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 978,460 to 980,553
_03559
Position (kb) 977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 976.115 kb on + strand, within MPMX19_03556 at 976.115 kb on + strand, within MPMX19_03556 at 976.283 kb on + strand, within MPMX19_03556 at 976.283 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.487 kb on + strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.488 kb on - strand, within MPMX19_03556 at 976.691 kb on + strand, within MPMX19_03556 at 976.691 kb on + strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 976.692 kb on - strand, within MPMX19_03556 at 977.032 kb on + strand at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.413 kb on + strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.414 kb on - strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.758 kb on + strand, within MPMX19_03557 at 977.987 kb on - strand at 978.152 kb on + strand, within MPMX19_03558 at 978.153 kb on - strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.224 kb on + strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.225 kb on - strand, within MPMX19_03558 at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.359 kb on + strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.360 kb on - strand at 978.424 kb on + strand at 978.425 kb on - strand at 978.512 kb on + strand at 978.839 kb on + strand, within MPMX19_03559 at 978.839 kb on + strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559 at 978.840 kb on - strand, within MPMX19_03559
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 976,115 + MPMX19_03556 0.25 -2.0 976,115 + MPMX19_03556 0.25 +1.5 976,283 + MPMX19_03556 0.41 -1.1 976,283 + MPMX19_03556 0.41 +0.3 976,487 + MPMX19_03556 0.59 -1.4 976,487 + MPMX19_03556 0.59 -1.1 976,487 + MPMX19_03556 0.59 -0.4 976,487 + MPMX19_03556 0.59 +0.5 976,488 - MPMX19_03556 0.59 +0.7 976,488 - MPMX19_03556 0.59 -2.1 976,488 - MPMX19_03556 0.59 +1.0 976,488 - MPMX19_03556 0.59 -0.5 976,488 - MPMX19_03556 0.59 +1.0 976,488 - MPMX19_03556 0.59 +1.2 976,691 + MPMX19_03556 0.78 -0.0 976,691 + MPMX19_03556 0.78 -2.0 976,692 - MPMX19_03556 0.78 -1.1 976,692 - MPMX19_03556 0.78 -0.3 976,692 - MPMX19_03556 0.78 -1.1 976,692 - MPMX19_03556 0.78 -1.3 976,692 - MPMX19_03556 0.78 -0.1 977,032 + -0.7 977,413 + MPMX19_03557 0.35 -0.0 977,413 + MPMX19_03557 0.35 +1.3 977,413 + MPMX19_03557 0.35 +1.1 977,413 + MPMX19_03557 0.35 +0.3 977,413 + MPMX19_03557 0.35 -0.1 977,413 + MPMX19_03557 0.35 -0.7 977,413 + MPMX19_03557 0.35 +4.1 977,413 + MPMX19_03557 0.35 +0.2 977,414 - MPMX19_03557 0.35 -0.4 977,414 - MPMX19_03557 0.35 +1.0 977,414 - MPMX19_03557 0.35 -1.1 977,414 - MPMX19_03557 0.35 +1.5 977,414 - MPMX19_03557 0.35 -0.7 977,758 + MPMX19_03557 0.74 -1.0 977,758 + MPMX19_03557 0.74 -0.3 977,987 - -0.5 978,152 + MPMX19_03558 0.36 -0.7 978,153 - MPMX19_03558 0.36 +0.8 978,224 + MPMX19_03558 0.55 -1.3 978,224 + MPMX19_03558 0.55 -1.8 978,224 + MPMX19_03558 0.55 -1.3 978,224 + MPMX19_03558 0.55 -0.5 978,225 - MPMX19_03558 0.55 -1.0 978,225 - MPMX19_03558 0.55 -0.1 978,225 - MPMX19_03558 0.55 -0.7 978,359 + -0.4 978,359 + +0.5 978,359 + -2.2 978,359 + -0.7 978,360 - -0.6 978,360 - +1.5 978,360 - -0.5 978,424 + -1.0 978,425 - -0.1 978,512 + -0.7 978,839 + MPMX19_03559 0.18 -0.6 978,839 + MPMX19_03559 0.18 -1.3 978,840 - MPMX19_03559 0.18 -1.6 978,840 - MPMX19_03559 0.18 -0.3 978,840 - MPMX19_03559 0.18 -3.3
Or see this region's nucleotide sequence