Experiment: NL-CCM_agar
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03038 and MPMX19_03039 are separated by 123 nucleotides MPMX19_03039 and MPMX19_03040 are separated by 116 nucleotides MPMX19_03040 and MPMX19_03041 overlap by 19 nucleotides MPMX19_03041 and MPMX19_03042 are separated by 109 nucleotides
MPMX19_03038: MPMX19_03038 - hypothetical protein, at 305,400 to 306,530
_03038
MPMX19_03039: MPMX19_03039 - Cyclic AMP receptor protein, at 306,654 to 307,373
_03039
MPMX19_03040: MPMX19_03040 - hypothetical protein, at 307,490 to 307,780
_03040
MPMX19_03041: MPMX19_03041 - hypothetical protein, at 307,762 to 308,253
_03041
MPMX19_03042: MPMX19_03042 - hypothetical protein, at 308,363 to 308,893
_03042
Position (kb) 307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 306.680 kb on - strand at 306.933 kb on + strand, within MPMX19_03039 at 306.933 kb on + strand, within MPMX19_03039 at 306.933 kb on + strand, within MPMX19_03039 at 306.933 kb on + strand, within MPMX19_03039 at 306.934 kb on - strand, within MPMX19_03039 at 306.934 kb on - strand, within MPMX19_03039 at 307.362 kb on - strand at 307.371 kb on + strand at 307.372 kb on - strand at 307.372 kb on - strand at 307.385 kb on + strand at 307.385 kb on + strand at 307.385 kb on + strand at 307.386 kb on - strand at 307.386 kb on - strand at 307.450 kb on + strand at 307.524 kb on + strand, within MPMX19_03040 at 307.525 kb on - strand, within MPMX19_03040 at 307.656 kb on - strand, within MPMX19_03040 at 308.311 kb on + strand at 308.311 kb on + strand at 308.311 kb on + strand at 308.312 kb on - strand at 308.447 kb on + strand, within MPMX19_03042 at 308.448 kb on - strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.585 kb on + strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042 at 308.586 kb on - strand, within MPMX19_03042
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM_agar remove 306,680 - +1.0 306,933 + MPMX19_03039 0.39 -0.1 306,933 + MPMX19_03039 0.39 +1.0 306,933 + MPMX19_03039 0.39 -1.6 306,933 + MPMX19_03039 0.39 -0.4 306,934 - MPMX19_03039 0.39 -0.7 306,934 - MPMX19_03039 0.39 -0.6 307,362 - +0.6 307,371 + -0.1 307,372 - -0.8 307,372 - +0.8 307,385 + -0.3 307,385 + +0.7 307,385 + -0.0 307,386 - -0.6 307,386 - -1.2 307,450 + -0.7 307,524 + MPMX19_03040 0.12 -0.6 307,525 - MPMX19_03040 0.12 -0.7 307,656 - MPMX19_03040 0.57 -0.5 308,311 + -1.7 308,311 + +0.4 308,311 + -2.0 308,312 - +0.7 308,447 + MPMX19_03042 0.16 -1.0 308,448 - MPMX19_03042 0.16 +0.1 308,585 + MPMX19_03042 0.42 -0.4 308,585 + MPMX19_03042 0.42 -1.4 308,585 + MPMX19_03042 0.42 +1.2 308,585 + MPMX19_03042 0.42 +0.1 308,585 + MPMX19_03042 0.42 -1.1 308,586 - MPMX19_03042 0.42 +0.9 308,586 - MPMX19_03042 0.42 +0.3 308,586 - MPMX19_03042 0.42 -1.7 308,586 - MPMX19_03042 0.42 -0.3 308,586 - MPMX19_03042 0.42 -0.3
Or see this region's nucleotide sequence