Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02715

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02714 and MPMX19_02715 are separated by 366 nucleotidesMPMX19_02715 and MPMX19_02716 are separated by 90 nucleotides MPMX19_02714: MPMX19_02714 - hypothetical protein, at 2,846,986 to 2,847,339 _02714 MPMX19_02715: MPMX19_02715 - DNA gyrase subunit B, at 2,847,706 to 2,850,189 _02715 MPMX19_02716: MPMX19_02716 - DNA replication and repair protein RecF, at 2,850,280 to 2,851,464 _02716 Position (kb) 2847 2848 2849 2850 2851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2846.736 kb on + strandat 2846.737 kb on - strandat 2846.779 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.833 kb on + strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.834 kb on - strandat 2846.835 kb on + strandat 2846.835 kb on + strandat 2846.836 kb on - strandat 2846.836 kb on - strandat 2846.836 kb on - strandat 2846.853 kb on - strandat 2846.857 kb on + strandat 2846.862 kb on + strandat 2846.862 kb on + strandat 2846.863 kb on - strandat 2846.863 kb on - strandat 2846.863 kb on - strandat 2846.863 kb on - strandat 2846.865 kb on + strandat 2846.865 kb on + strandat 2846.866 kb on - strandat 2846.866 kb on - strandat 2846.866 kb on - strandat 2846.866 kb on - strandat 2846.867 kb on + strandat 2846.867 kb on + strandat 2846.867 kb on + strandat 2846.867 kb on + strandat 2846.868 kb on - strandat 2846.868 kb on - strandat 2846.952 kb on + strandat 2846.953 kb on - strandat 2846.953 kb on - strandat 2846.971 kb on - strandat 2846.971 kb on - strandat 2846.982 kb on + strandat 2846.982 kb on + strandat 2846.982 kb on + strandat 2846.982 kb on + strandat 2846.982 kb on + strandat 2846.982 kb on + strandat 2846.983 kb on - strandat 2846.983 kb on - strandat 2846.983 kb on - strandat 2846.983 kb on - strandat 2846.983 kb on - strandat 2846.983 kb on - strandat 2846.983 kb on - strandat 2846.985 kb on + strandat 2846.985 kb on + strandat 2846.985 kb on + strandat 2846.985 kb on + strandat 2846.985 kb on + strandat 2846.986 kb on - strandat 2846.986 kb on - strandat 2846.986 kb on - strandat 2846.986 kb on - strandat 2846.986 kb on - strandat 2846.986 kb on - strandat 2847.002 kb on + strandat 2847.245 kb on + strand, within MPMX19_02714at 2847.245 kb on + strand, within MPMX19_02714at 2847.245 kb on + strand, within MPMX19_02714at 2847.245 kb on + strand, within MPMX19_02714at 2847.245 kb on + strand, within MPMX19_02714at 2847.246 kb on - strand, within MPMX19_02714at 2847.246 kb on - strand, within MPMX19_02714at 2847.246 kb on - strand, within MPMX19_02714at 2847.246 kb on - strand, within MPMX19_02714at 2847.389 kb on + strandat 2847.389 kb on + strandat 2847.390 kb on - strandat 2847.390 kb on - strandat 2847.436 kb on + strandat 2847.436 kb on + strandat 2847.437 kb on - strandat 2847.437 kb on - strandat 2847.460 kb on + strandat 2847.460 kb on + strandat 2847.467 kb on - strandat 2847.467 kb on - strandat 2847.480 kb on + strandat 2847.480 kb on + strandat 2847.480 kb on + strandat 2847.481 kb on - strandat 2847.498 kb on + strandat 2847.498 kb on + strandat 2847.498 kb on + strandat 2847.499 kb on - strandat 2847.552 kb on + strandat 2847.552 kb on + strandat 2847.552 kb on + strandat 2847.552 kb on + strandat 2847.553 kb on - strandat 2847.570 kb on + strandat 2847.570 kb on + strandat 2847.570 kb on + strandat 2847.570 kb on + strandat 2847.633 kb on - strandat 2847.633 kb on - strandat 2847.633 kb on - strandat 2847.633 kb on - strandat 2847.633 kb on - strandat 2847.633 kb on - strandat 2847.633 kb on - strandat 2847.641 kb on + strandat 2847.641 kb on + strandat 2847.659 kb on - strandat 2847.684 kb on + strandat 2847.684 kb on + strandat 2847.685 kb on - strandat 2847.685 kb on - strandat 2847.685 kb on - strandat 2850.230 kb on - strandat 2850.230 kb on - strandat 2850.921 kb on - strand, within MPMX19_02716

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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2,846,736 + -1.1
2,846,737 - -0.8
2,846,779 + -0.5
2,846,833 + -1.4
2,846,833 + +0.5
2,846,833 + -0.2
2,846,833 + -1.1
2,846,833 + -0.2
2,846,833 + +0.3
2,846,833 + +0.5
2,846,833 + -0.3
2,846,833 + -1.8
2,846,833 + -2.2
2,846,834 - -0.8
2,846,834 - +0.7
2,846,834 - -1.5
2,846,834 - -1.3
2,846,834 - -0.6
2,846,834 - +0.7
2,846,834 - -1.6
2,846,834 - -0.8
2,846,834 - +1.4
2,846,834 - +0.1
2,846,834 - +0.8
2,846,834 - -0.1
2,846,835 + -1.4
2,846,835 + +0.1
2,846,836 - +0.1
2,846,836 - -0.1
2,846,836 - -0.8
2,846,853 - -2.5
2,846,857 + -0.4
2,846,862 + +1.8
2,846,862 + -0.4
2,846,863 - +0.6
2,846,863 - -0.1
2,846,863 - +0.6
2,846,863 - +0.6
2,846,865 + +0.2
2,846,865 + -0.6
2,846,866 - -1.3
2,846,866 - +0.6
2,846,866 - -0.9
2,846,866 - +0.4
2,846,867 + -0.3
2,846,867 + +0.3
2,846,867 + -0.5
2,846,867 + -0.8
2,846,868 - -0.2
2,846,868 - -0.2
2,846,952 + -1.3
2,846,953 - -1.7
2,846,953 - +0.3
2,846,971 - -0.7
2,846,971 - -0.2
2,846,982 + +0.2
2,846,982 + +1.0
2,846,982 + +0.8
2,846,982 + +0.0
2,846,982 + +0.3
2,846,982 + +1.8
2,846,983 - +0.8
2,846,983 - +1.1
2,846,983 - -0.8
2,846,983 - -2.2
2,846,983 - +0.2
2,846,983 - +0.0
2,846,983 - -1.2
2,846,985 + -1.4
2,846,985 + +0.0
2,846,985 + -0.1
2,846,985 + -0.2
2,846,985 + +0.1
2,846,986 - -0.4
2,846,986 - -0.5
2,846,986 - -0.1
2,846,986 - +0.3
2,846,986 - -0.6
2,846,986 - -0.2
2,847,002 + -2.1
2,847,245 + MPMX19_02714 0.73 -0.7
2,847,245 + MPMX19_02714 0.73 -0.6
2,847,245 + MPMX19_02714 0.73 -2.0
2,847,245 + MPMX19_02714 0.73 +0.2
2,847,245 + MPMX19_02714 0.73 -1.2
2,847,246 - MPMX19_02714 0.73 +0.4
2,847,246 - MPMX19_02714 0.73 -0.4
2,847,246 - MPMX19_02714 0.73 -1.2
2,847,246 - MPMX19_02714 0.73 -0.7
2,847,389 + -2.2
2,847,389 + -2.0
2,847,390 - +0.2
2,847,390 - -0.4
2,847,436 + -1.8
2,847,436 + -1.4
2,847,437 - -0.6
2,847,437 - +1.3
2,847,460 + -1.3
2,847,460 + -0.5
2,847,467 - +0.2
2,847,467 - +1.2
2,847,480 + +0.1
2,847,480 + +0.3
2,847,480 + -0.2
2,847,481 - +0.5
2,847,498 + -1.6
2,847,498 + -1.1
2,847,498 + +0.9
2,847,499 - -1.5
2,847,552 + -1.6
2,847,552 + +0.6
2,847,552 + -3.1
2,847,552 + +0.9
2,847,553 - +0.4
2,847,570 + +0.3
2,847,570 + +1.1
2,847,570 + -0.8
2,847,570 + -0.6
2,847,633 - +1.4
2,847,633 - +0.4
2,847,633 - -0.9
2,847,633 - -2.1
2,847,633 - +1.6
2,847,633 - -1.4
2,847,633 - -0.8
2,847,641 + -0.3
2,847,641 + +0.1
2,847,659 - -0.7
2,847,684 + -1.2
2,847,684 + +0.2
2,847,685 - -0.8
2,847,685 - -1.3
2,847,685 - -0.2
2,850,230 - -0.8
2,850,230 - +0.2
2,850,921 - MPMX19_02716 0.54 +1.3

Or see this region's nucleotide sequence