Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00513

Experiment: NL-CCM_agar

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00512 and MPMX19_00513 are separated by 254 nucleotidesMPMX19_00513 and MPMX19_00514 are separated by 302 nucleotides MPMX19_00512: MPMX19_00512 - Sensor histidine kinase RcsC, at 515,154 to 516,764 _00512 MPMX19_00513: MPMX19_00513 - Phosphotransferase RcsD, at 517,019 to 518,488 _00513 MPMX19_00514: MPMX19_00514 - Sensor histidine kinase RcsC, at 518,791 to 521,076 _00514 Position (kb) 517 518 519Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 516.375 kb on + strand, within MPMX19_00512at 516.375 kb on + strand, within MPMX19_00512at 516.376 kb on - strand, within MPMX19_00512at 516.376 kb on - strand, within MPMX19_00512at 516.376 kb on - strand, within MPMX19_00512at 516.412 kb on - strand, within MPMX19_00512at 516.783 kb on + strandat 516.783 kb on + strandat 516.783 kb on + strandat 516.783 kb on + strandat 516.784 kb on - strandat 516.784 kb on - strandat 516.784 kb on - strandat 516.790 kb on - strandat 516.790 kb on - strandat 516.815 kb on + strandat 516.815 kb on + strandat 516.815 kb on + strandat 516.815 kb on + strandat 516.816 kb on - strandat 516.827 kb on + strandat 516.827 kb on + strandat 516.828 kb on - strandat 516.842 kb on - strandat 516.842 kb on - strandat 516.884 kb on + strandat 516.919 kb on + strandat 516.919 kb on + strandat 516.919 kb on + strandat 516.920 kb on - strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on + strandat 516.977 kb on - strandat 516.978 kb on - strandat 516.978 kb on - strandat 516.978 kb on - strandat 516.978 kb on - strandat 516.978 kb on - strandat 516.978 kb on - strandat 516.984 kb on + strandat 516.984 kb on + strandat 516.984 kb on + strandat 516.984 kb on + strandat 516.984 kb on + strandat 516.984 kb on + strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.985 kb on - strandat 516.990 kb on + strandat 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.251 kb on + strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 517.252 kb on - strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.210 kb on + strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.211 kb on - strand, within MPMX19_00513at 518.409 kb on - strandat 518.529 kb on + strandat 518.529 kb on + strandat 518.529 kb on + strandat 518.529 kb on + strandat 518.529 kb on + strandat 518.530 kb on - strandat 518.530 kb on - strandat 518.540 kb on + strandat 518.540 kb on + strandat 518.541 kb on - strandat 518.554 kb on + strandat 518.555 kb on - strandat 518.604 kb on + strandat 518.605 kb on - strandat 518.605 kb on - strandat 518.651 kb on - strandat 518.673 kb on + strandat 518.722 kb on + strandat 518.722 kb on + strandat 518.723 kb on - strandat 518.738 kb on + strandat 518.739 kb on - strandat 519.073 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.400 kb on + strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.401 kb on - strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.430 kb on + strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.431 kb on - strand, within MPMX19_00514at 519.442 kb on + strand, within MPMX19_00514at 519.442 kb on + strand, within MPMX19_00514at 519.442 kb on + strand, within MPMX19_00514at 519.442 kb on + strand, within MPMX19_00514at 519.442 kb on + strand, within MPMX19_00514at 519.442 kb on + strand, within MPMX19_00514at 519.443 kb on - strand, within MPMX19_00514at 519.443 kb on - strand, within MPMX19_00514at 519.443 kb on - strand, within MPMX19_00514at 519.443 kb on - strand, within MPMX19_00514at 519.443 kb on - strand, within MPMX19_00514at 519.478 kb on + strand, within MPMX19_00514at 519.478 kb on + strand, within MPMX19_00514at 519.478 kb on + strand, within MPMX19_00514at 519.478 kb on + strand, within MPMX19_00514at 519.479 kb on - strand, within MPMX19_00514at 519.479 kb on - strand, within MPMX19_00514at 519.479 kb on - strand, within MPMX19_00514at 519.479 kb on - strand, within MPMX19_00514

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM_agar
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516,375 + MPMX19_00512 0.76 +0.9
516,375 + MPMX19_00512 0.76 -0.1
516,376 - MPMX19_00512 0.76 -0.8
516,376 - MPMX19_00512 0.76 -0.5
516,376 - MPMX19_00512 0.76 +0.6
516,412 - MPMX19_00512 0.78 -0.4
516,783 + -2.0
516,783 + -0.8
516,783 + +0.6
516,783 + -0.0
516,784 - +0.8
516,784 - +0.2
516,784 - -0.4
516,790 - +0.6
516,790 - +0.1
516,815 + -0.2
516,815 + +0.2
516,815 + -0.3
516,815 + -0.9
516,816 - -0.5
516,827 + -1.3
516,827 + -2.4
516,828 - -0.3
516,842 - -0.9
516,842 - +1.4
516,884 + +2.6
516,919 + +0.6
516,919 + +1.1
516,919 + +0.3
516,920 - -0.0
516,977 + -1.4
516,977 + -1.3
516,977 + -1.3
516,977 + +0.3
516,977 + -0.5
516,977 + -0.7
516,977 + -2.4
516,977 + -1.9
516,977 + -0.1
516,977 + -0.3
516,977 + -2.6
516,977 + -0.4
516,977 + -0.6
516,977 + -0.9
516,977 - -2.2
516,978 - +0.2
516,978 - -0.2
516,978 - +0.6
516,978 - -0.8
516,978 - -0.6
516,978 - +0.1
516,984 + -0.2
516,984 + +2.0
516,984 + -1.3
516,984 + -0.4
516,984 + -1.4
516,984 + +0.3
516,985 - +0.2
516,985 - -0.6
516,985 - -0.4
516,985 - +0.3
516,985 - -1.3
516,985 - +0.1
516,985 - +0.7
516,985 - -1.4
516,985 - -0.6
516,985 - -0.3
516,985 - +0.3
516,985 - +0.6
516,990 + -0.4
517,251 + MPMX19_00513 0.16 -0.0
517,251 + MPMX19_00513 0.16 -1.2
517,251 + MPMX19_00513 0.16 +0.6
517,251 + MPMX19_00513 0.16 -0.0
517,251 + MPMX19_00513 0.16 -0.5
517,251 + MPMX19_00513 0.16 -1.4
517,251 + MPMX19_00513 0.16 +0.3
517,251 + MPMX19_00513 0.16 -0.2
517,251 + MPMX19_00513 0.16 +1.7
517,252 - MPMX19_00513 0.16 +0.2
517,252 - MPMX19_00513 0.16 -0.7
517,252 - MPMX19_00513 0.16 -0.4
517,252 - MPMX19_00513 0.16 -0.4
517,252 - MPMX19_00513 0.16 +0.1
517,252 - MPMX19_00513 0.16 -0.4
517,252 - MPMX19_00513 0.16 +0.2
517,252 - MPMX19_00513 0.16 +1.1
517,252 - MPMX19_00513 0.16 +0.6
517,252 - MPMX19_00513 0.16 -2.4
517,252 - MPMX19_00513 0.16 -0.9
517,252 - MPMX19_00513 0.16 -1.3
517,252 - MPMX19_00513 0.16 -0.8
517,252 - MPMX19_00513 0.16 +1.1
518,210 + MPMX19_00513 0.81 -0.7
518,210 + MPMX19_00513 0.81 +0.1
518,210 + MPMX19_00513 0.81 -0.3
518,210 + MPMX19_00513 0.81 -0.9
518,210 + MPMX19_00513 0.81 +0.7
518,210 + MPMX19_00513 0.81 -0.3
518,210 + MPMX19_00513 0.81 -0.3
518,210 + MPMX19_00513 0.81 +0.6
518,210 + MPMX19_00513 0.81 -0.4
518,211 - MPMX19_00513 0.81 +0.9
518,211 - MPMX19_00513 0.81 +0.3
518,211 - MPMX19_00513 0.81 +0.1
518,211 - MPMX19_00513 0.81 -1.0
518,211 - MPMX19_00513 0.81 +2.2
518,211 - MPMX19_00513 0.81 -1.6
518,211 - MPMX19_00513 0.81 +0.3
518,211 - MPMX19_00513 0.81 +2.6
518,211 - MPMX19_00513 0.81 -0.2
518,211 - MPMX19_00513 0.81 +0.4
518,409 - -1.0
518,529 + +0.7
518,529 + +1.0
518,529 + -1.0
518,529 + +0.4
518,529 + -0.1
518,530 - +0.3
518,530 - -0.4
518,540 + +1.0
518,540 + +0.6
518,541 - +0.4
518,554 + +0.7
518,555 - -0.1
518,604 + +1.0
518,605 - -0.8
518,605 - +0.4
518,651 - -3.0
518,673 + -1.6
518,722 + +0.4
518,722 + +1.3
518,723 - +1.8
518,738 + +0.2
518,739 - +0.6
519,073 + MPMX19_00514 0.12 -0.5
519,400 + MPMX19_00514 0.27 -1.7
519,400 + MPMX19_00514 0.27 -0.4
519,400 + MPMX19_00514 0.27 -1.0
519,400 + MPMX19_00514 0.27 -0.7
519,400 + MPMX19_00514 0.27 -1.6
519,400 + MPMX19_00514 0.27 +0.9
519,400 + MPMX19_00514 0.27 -0.7
519,400 + MPMX19_00514 0.27 -0.6
519,400 + MPMX19_00514 0.27 -0.6
519,400 + MPMX19_00514 0.27 +0.6
519,400 + MPMX19_00514 0.27 -0.6
519,401 - MPMX19_00514 0.27 -0.0
519,401 - MPMX19_00514 0.27 -2.5
519,401 - MPMX19_00514 0.27 +1.3
519,401 - MPMX19_00514 0.27 -2.0
519,401 - MPMX19_00514 0.27 -0.4
519,401 - MPMX19_00514 0.27 -0.8
519,401 - MPMX19_00514 0.27 +1.6
519,401 - MPMX19_00514 0.27 +0.4
519,401 - MPMX19_00514 0.27 +0.3
519,430 + MPMX19_00514 0.28 -0.1
519,430 + MPMX19_00514 0.28 +0.3
519,430 + MPMX19_00514 0.28 -0.4
519,430 + MPMX19_00514 0.28 +0.1
519,430 + MPMX19_00514 0.28 +0.4
519,430 + MPMX19_00514 0.28 -1.7
519,430 + MPMX19_00514 0.28 +0.1
519,430 + MPMX19_00514 0.28 -1.9
519,430 + MPMX19_00514 0.28 +0.6
519,430 + MPMX19_00514 0.28 +1.0
519,430 + MPMX19_00514 0.28 -1.0
519,430 + MPMX19_00514 0.28 -1.5
519,430 + MPMX19_00514 0.28 -0.5
519,430 + MPMX19_00514 0.28 -1.0
519,430 + MPMX19_00514 0.28 +0.2
519,430 + MPMX19_00514 0.28 +1.5
519,430 + MPMX19_00514 0.28 -2.2
519,431 - MPMX19_00514 0.28 +0.0
519,431 - MPMX19_00514 0.28 -0.0
519,431 - MPMX19_00514 0.28 -0.7
519,431 - MPMX19_00514 0.28 +0.3
519,431 - MPMX19_00514 0.28 +1.2
519,431 - MPMX19_00514 0.28 -0.4
519,431 - MPMX19_00514 0.28 +0.3
519,431 - MPMX19_00514 0.28 +0.4
519,431 - MPMX19_00514 0.28 -1.4
519,431 - MPMX19_00514 0.28 -0.2
519,431 - MPMX19_00514 0.28 -0.8
519,431 - MPMX19_00514 0.28 +0.3
519,431 - MPMX19_00514 0.28 -1.3
519,431 - MPMX19_00514 0.28 -0.4
519,431 - MPMX19_00514 0.28 +0.3
519,431 - MPMX19_00514 0.28 +0.6
519,431 - MPMX19_00514 0.28 -1.3
519,431 - MPMX19_00514 0.28 -2.0
519,431 - MPMX19_00514 0.28 -0.6
519,431 - MPMX19_00514 0.28 -0.4
519,431 - MPMX19_00514 0.28 -1.3
519,442 + MPMX19_00514 0.28 -2.2
519,442 + MPMX19_00514 0.28 +1.1
519,442 + MPMX19_00514 0.28 -0.0
519,442 + MPMX19_00514 0.28 +1.6
519,442 + MPMX19_00514 0.28 +0.1
519,442 + MPMX19_00514 0.28 -0.3
519,443 - MPMX19_00514 0.29 -0.2
519,443 - MPMX19_00514 0.29 +0.9
519,443 - MPMX19_00514 0.29 -0.7
519,443 - MPMX19_00514 0.29 -1.3
519,443 - MPMX19_00514 0.29 +0.8
519,478 + MPMX19_00514 0.30 -1.3
519,478 + MPMX19_00514 0.30 -1.8
519,478 + MPMX19_00514 0.30 -0.8
519,478 + MPMX19_00514 0.30 +0.4
519,479 - MPMX19_00514 0.30 -0.3
519,479 - MPMX19_00514 0.30 -0.0
519,479 - MPMX19_00514 0.30 +0.2
519,479 - MPMX19_00514 0.30 -0.7

Or see this region's nucleotide sequence